<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT accession="ERX2931045" alias="E-MTAB-7404:Hymenoscyphus linearis chi01_p" broker_name="ArrayExpress" center_name="UNIVERSITY OF COPENHAGEN">
    <IDENTIFIERS>
      <PRIMARY_ID>ERX2931045</PRIMARY_ID>
      <SUBMITTER_ID namespace="UNIVERSITY OF COPENHAGEN">E-MTAB-7404:Hymenoscyphus linearis chi01_p</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Illumina HiSeq 2500 paired end sequencing; RNA-seq of Hymenoscyphus linearis chi01 grown on potato dextrose medium</TITLE>
    <STUDY_REF accession="ERP112226">
      <IDENTIFIERS>
        <PRIMARY_ID>ERP112226</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJEB29875</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>RNA-seq of Hymenoscyphus linearis chi01 grown on potato dextrose medium</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="ERS2909253">
        <IDENTIFIERS>
          <PRIMARY_ID>ERS2909253</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMEA5097919</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Hymenoscyphus linearis chi01_p</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PolyA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="200"/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>The fungus was grown in PDB for 3 weeks at 20c. The mycelial mat was harvested for RNA extraction. RNA was extracted using Trizol/PureLink RNA mini kit. The library was constructed using TruSeq Stranded mRNA LT Sample Prep Kit.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>F</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>R</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>Experimental Factor: replicate</TAG>
        <VALUE>1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
</EXPERIMENT_SET>
