<?xml version="1.0" encoding="UTF-8"?>
<STUDY_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <STUDY accession="ERP114139" alias="ena-STUDY-UNIVERSITY OF VIENNA-06-03-2019-10:11:58:818-218" center_name="UNIVERSITY OF VIENNA">
    <IDENTIFIERS>
      <PRIMARY_ID>ERP114139</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJEB31568</EXTERNAL_ID>
      <SUBMITTER_ID namespace="UNIVERSITY OF VIENNA">ena-STUDY-UNIVERSITY OF VIENNA-06-03-2019-10:11:58:818-218</SUBMITTER_ID>
    </IDENTIFIERS>
    <DESCRIPTOR>
      <STUDY_TITLE>Editing independent dysregulation of Rps3a1 and its pseudogene Rps3a3 in Adar?7-9 mice</STUDY_TITLE>
      <STUDY_TYPE existing_study_type="Other"/>
      <STUDY_ABSTRACT>Four different Adar knockout alleles have been studied so far. All of them show the same phenotype at E12.5, namely, apoptosis, liver disintegration and elevated immune response triggered via MDA5/MAVS pathway. All the Adar knockout alleles can be rescued by a concomitant deletion of Mavs or Ifih1 (MDA5).  However, each of them show a distinct rescued phenotype dependent on the kind of truncation in the Adar allele. Adar?2-13 and Adar?7-9 are used interchangeably as null mice since both of these are devoid of ADAR1 editing.  Here, we show that Adar?7-9 can form a truncated, mislocalized and editing deficient protein. We also report an extensive study on the rescued Adar?7-9; Mavs -/-  mice which interestingly show a phenotype different than any phenotype of other rescued alleles. Histology and cytometry analysis indicated defects in multiple tissues of these mice. However, all the studied tissues showed a dysregulation of Rps3a1 and Rps3a3. Consistent with this, they show a distortion in 40S and 60S ribosomal ratio in polysome profiling of liver tissues. This dysregulation is also seen in Adar?2-13; Mavs -/-  but not in AdarE861A/E861A; Ifih1-/-, suggesting editing independent function of ADAR1 in regulating the expression levels of Rps3a1 and Rps3a3.</STUDY_ABSTRACT>
      <CENTER_PROJECT_NAME>Adar?7-9 mice: dysregulation of Rps3a</CENTER_PROJECT_NAME>
      <STUDY_DESCRIPTION>Four different Adar knockout alleles have been studied so far. All of them show the same phenotype at E12.5, namely, apoptosis, liver disintegration and elevated immune response triggered via MDA5/MAVS pathway. All the Adar knockout alleles can be rescued by a concomitant deletion of Mavs or Ifih1 (MDA5).  However, each of them show a distinct rescued phenotype dependent on the kind of truncation in the Adar allele. Adar?2-13 and Adar?7-9 are used interchangeably as null mice since both of these are devoid of ADAR1 editing.  Here, we show that Adar?7-9 can form a truncated, mislocalized and editing deficient protein. We also report an extensive study on the rescued Adar?7-9; Mavs -/-  mice which interestingly show a phenotype different than any phenotype of other rescued alleles. Histology and cytometry analysis indicated defects in multiple tissues of these mice. However, all the studied tissues showed a dysregulation of Rps3a1 and Rps3a3. Consistent with this, they show a distortion in 40S and 60S ribosomal ratio in polysome profiling of liver tissues. This dysregulation is also seen in Adar?2-13; Mavs -/-  but not in AdarE861A/E861A; Ifih1-/-, suggesting editing independent function of ADAR1 in regulating the expression levels of Rps3a1 and Rps3a3.</STUDY_DESCRIPTION>
    </DESCRIPTOR>
    <STUDY_ATTRIBUTES>
      <STUDY_ATTRIBUTE>
        <TAG>ENA-FIRST-PUBLIC</TAG>
        <VALUE>2019-08-15</VALUE>
      </STUDY_ATTRIBUTE>
      <STUDY_ATTRIBUTE>
        <TAG>ENA-LAST-UPDATE</TAG>
        <VALUE>2019-03-06</VALUE>
      </STUDY_ATTRIBUTE>
    </STUDY_ATTRIBUTES>
  </STUDY>
</STUDY_SET>
