<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT accession="ERX3294551" alias="exp_TZCH-SAA-0173" center_name="THE ROSLIN INSTITUTE">
    <IDENTIFIERS>
      <PRIMARY_ID>ERX3294551</PRIMARY_ID>
      <SUBMITTER_ID namespace="THE ROSLIN INSTITUTE">exp_TZCH-SAA-0173</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>HiSeq X Ten paired end sequencing; Whole genome sequence (VarGoats 266 dataset)</TITLE>
    <STUDY_REF accession="ERP114470">
      <IDENTIFIERS>
        <PRIMARY_ID>ERP114470</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJEB31857</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="ERS3357899">
        <IDENTIFIERS>
          <PRIMARY_ID>ERS3357899</PRIMARY_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>TZCH-SAA-0173</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="150" NOMINAL_SDEV="20"/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Next Generation sequencing libraries are prepared using Illumina SeqLab specific TruSeq Nano High Throughput library preparation kits in conjunction with the Hamilton MicroLab STAR and Clarity LIMS X Edition. The gDNA samples are normalised to the concentration and volume required for the Illumina TruSeq Nano library preparation kits, then sheared to a 450bp mean insert size using a Covaris LE220 focused-ultrasonicator. The inserts are ligated with blunt ended, Atailed, size selected, TruSeq adapters and enriched using 8 cycles of PCR amplification. The libraries are evaluated for mean peak size and quantity using the Caliper GX Touch with a HT DNA 1k/12K/HI SENS LabChip and HT DNA HI SENS Reagent Kit. The libraries are normalised to 5nM using the GX data and the actual concentration was established using a Roche LightCycler 480 and a Kapa Illumina Library Quantification kit and Standards.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>HiSeq X Ten</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>library preparation date</TAG>
        <VALUE>2018-08</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
</EXPERIMENT_SET>
