ERS3438334 SAMEA5634267 Sample 1 3702 Arabidopsis thaliana Protocols: Harvesting of whole seedlings. Briefly, the RNA-Seq data for Experiments 1 is wild-type (WT) Arabidopsis thaliana Colombia-0 (Col-0) biological replicates. WT A. thaliana Col-0 seeds were sown aseptically on MS10 plates. The seeds were stratified for 2 days at 4C and then grown at a constant 21C under a 16-h light/8-h dark cycle for a further 14 days, at the end of which the seedlings were harvested. Total RNA was isolated from the seedlings with the RNeasy Plant Mini Kit (Qiagen). In Experiment 1, DNAse digestion was performed on column, as a part of RNA isolation, and 8 μl of ERCC spike-ins (Exter-nal RNA Controls Consortium 2005) at a 1:100 dilution was added to 4 μg of total RNA. Libraries were prepared according to the TruSeq® Stranded mRNA Sample Preparation Guide Rev E. ENA-FIRST-PUBLIC 2019-05-29T17:03:27Z ENA-LAST-UPDATE 2019-05-23T12:06:10Z External Id SAMEA5634267 INSDC center name Biomathematics and Statistics Scotland INSDC first public 2019-05-29T17:03:27Z INSDC last update 2019-05-23T12:06:10Z INSDC status public Submitter Id E-MTAB-7990:Sample 1 age 10 broker name ArrayExpress common name thale cress developmental stage seedling genotype wild type genotype organism part whole organism sample name E-MTAB-7990:Sample 1 scientific_name Arabidopsis thaliana ecotype Col-0 ERS3438335 SAMEA5634268 Sample 2 3702 Arabidopsis thaliana Protocols: Harvesting of whole seedlings. Briefly, the RNA-Seq data for Experiments 1 is wild-type (WT) Arabidopsis thaliana Colombia-0 (Col-0) biological replicates. WT A. thaliana Col-0 seeds were sown aseptically on MS10 plates. The seeds were stratified for 2 days at 4C and then grown at a constant 21C under a 16-h light/8-h dark cycle for a further 14 days, at the end of which the seedlings were harvested. Total RNA was isolated from the seedlings with the RNeasy Plant Mini Kit (Qiagen). In Experiment 1, DNAse digestion was performed on column, as a part of RNA isolation, and 8 μl of ERCC spike-ins (Exter-nal RNA Controls Consortium 2005) at a 1:100 dilution was added to 4 μg of total RNA. Libraries were prepared according to the TruSeq® Stranded mRNA Sample Preparation Guide Rev E. ENA-FIRST-PUBLIC 2019-05-29T17:03:27Z ENA-LAST-UPDATE 2019-05-23T12:06:10Z External Id SAMEA5634268 INSDC center name Biomathematics and Statistics Scotland INSDC first public 2019-05-29T17:03:27Z INSDC last update 2019-05-23T12:06:10Z INSDC status public Submitter Id E-MTAB-7990:Sample 2 age 10 broker name ArrayExpress common name thale cress developmental stage seedling genotype wild type genotype organism part whole organism sample name E-MTAB-7990:Sample 2 scientific_name Arabidopsis thaliana ecotype Col-0 ERS3438336 SAMEA5634269 Sample 3 3702 Arabidopsis thaliana Protocols: Harvesting of whole seedlings. Briefly, the RNA-Seq data for Experiments 1 is wild-type (WT) Arabidopsis thaliana Colombia-0 (Col-0) biological replicates. WT A. thaliana Col-0 seeds were sown aseptically on MS10 plates. The seeds were stratified for 2 days at 4C and then grown at a constant 21C under a 16-h light/8-h dark cycle for a further 14 days, at the end of which the seedlings were harvested. Total RNA was isolated from the seedlings with the RNeasy Plant Mini Kit (Qiagen). In Experiment 1, DNAse digestion was performed on column, as a part of RNA isolation, and 8 μl of ERCC spike-ins (Exter-nal RNA Controls Consortium 2005) at a 1:100 dilution was added to 4 μg of total RNA. Libraries were prepared according to the TruSeq® Stranded mRNA Sample Preparation Guide Rev E. ENA-FIRST-PUBLIC 2019-05-29T17:03:27Z ENA-LAST-UPDATE 2019-05-23T12:06:10Z External Id SAMEA5634269 INSDC center name Biomathematics and Statistics Scotland INSDC first public 2019-05-29T17:03:27Z INSDC last update 2019-05-23T12:06:10Z INSDC status public Submitter Id E-MTAB-7990:Sample 3 age 10 broker name ArrayExpress common name thale cress developmental stage seedling genotype wild type genotype organism part whole organism sample name E-MTAB-7990:Sample 3 scientific_name Arabidopsis thaliana ecotype Col-0