ERS3559776 SAMEA5756322 2588693 Candidatus Syntrophoarchaeum sp. GoM_oil SAG Sample from sediment core 10 cm long from an oil seep ENA-FIRST-PUBLIC 2019-07-11T04:03:48Z ENA-LAST-UPDATE 2019-07-04T22:16:02Z External Id SAMEA5756322 INSDC center name Max Planck Institute for Marine Microbiology INSDC first public 2019-07-11T04:03:48Z INSDC last update 2019-07-04T22:16:02Z INSDC status public Submitter Id gfbio:sag-sample:67c8463b-6cbd-4d56-a398-d795175a9500 WGA amplification approach mda based assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software SPAdes v.3.0.0 broker name GFBIO collection date 2015-03-20 completeness score 42.72 completeness software checkm contamination score 0 environment (biome) deep marine sediment [ENVO:00002113] environment (feature) oil seep [ENVO:00002063] environment (material) marine sediment [ENVO:03000033] geographic location (country and/or sea) Atlantic Ocean geographic location (depth) 0.00-0.03 geographic location (elevation) -2925 geographic location (latitude) 21.8999 geographic location (longitude) -93.43518 geographic location (region and locality) Gulf of Mexico: Campeche Knolls, Chapopote asphalt volcano investigation type single amplified genome isolation source sediment core from an oil seep metagenomic source marine sediment metagenome project name Degradation of hydrocarbons by archaea in the Gulf of Mexico sample derived from ERS3467135,ERR3365596 sample name gfbio:sag-sample:67c8463b-6cbd-4d56-a398-d795175a9500 scientific_name Candidatus Syntrophoarchaeum sp. GoM_oil sequencing method NextSeq 500 single cell or viral particle lysis approach combination sorting technology flow cytometric cell sorting taxonomic identity marker 16S rRNA total depth of water column 2925 ERS3559777 SAMEA5756323 2588692 Candidatus Methanolliviera sp. GoM_asphalt MAG sample from ERS3467133,ERR3341263 ENA-FIRST-PUBLIC 2019-07-11T04:03:48Z ENA-LAST-UPDATE 2019-07-04T22:16:02Z External Id SAMEA5756323 INSDC center name Max Planck Institute for Marine Microbiology INSDC first public 2019-07-11T04:03:48Z INSDC last update 2019-07-04T22:16:02Z INSDC status public Submitter Id gfbio:mag-sample-1:67c8463b-6cbd-4d56-a398-d795175a9500 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software SPAdes v.3.0.0 binning parameters Tetranucleotide identity, coverage mapping and coherence of the taxonomic affiliation of the predicted bin proteins binning software Metawatt v. 3.5.3 broker name GFBIO collection date 2015-03-12 completeness score 92.24 completeness software checkm contamination score 1.73 environment (biome) marine benthic biome [ENVO:01000024] environment (feature) marine benthic feature [ENVO:01000105] environment (material) marine sediment [ENVO:03000033] geographic location (country and/or sea) Atlantic Ocean geographic location (depth) 0.15 geographic location (elevation) -3092 geographic location (latitude) 22.0225667 geographic location (longitude) -93.246817 geographic location (region and locality) Gulf of Mexico: Campeche Knolls, Mictlan asphalt field investigation type metagenome-assembled genome isolation source gravity core from an asphalt area metagenomic source marine sediment metagenome project name Degradation of hydrocarbons by archaea in the Gulf of Mexico sample derived from ERS3467133 sample name gfbio:mag-sample-1:67c8463b-6cbd-4d56-a398-d795175a9500 scientific_name Candidatus Methanolliviera sp. GoM_asphalt sequencing method Illumina MiSeq taxonomic identity marker 16S rRNA total depth of water column 3092 ERS3559778 SAMEA5756324 2588691 Candidatus Methanolliviera sp. GoM_oil MAG derived from ERS3467135 ENA-FIRST-PUBLIC 2019-07-11T04:03:48Z ENA-LAST-UPDATE 2019-07-04T22:16:02Z External Id SAMEA5756324 INSDC center name Max Planck Institute for Marine Microbiology INSDC first public 2019-07-11T04:03:48Z INSDC last update 2019-07-04T22:16:02Z INSDC status public Submitter Id gfbio:mag-sample-2:67c8463b-6cbd-4d56-a398-d795175a9500 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software SPAdes v.3.0.0 binning parameters Tetranucleotide identity, coverage mapping and coherence of the taxonomic affiliation of the predicted bin proteins binning software Metawatt v. 3.5.3 broker name GFBIO collection date 2015-03-20 completeness score 75.2 completeness software checkm contamination score 1.47 environment (biome) marine cold seep biome [ENVO:01000127] environment (feature) oil seep [ENVO:00002063] environment (material) marine sediment [ENVO:03000033] environmental package sediment geographic location (country and/or sea) Atlantic Ocean geographic location (depth) 0.00-0.03 geographic location (elevation) -2925 geographic location (latitude) 21.8999 geographic location (longitude) -93.43518 geographic location (region and locality) Gulf of Mexico: Campeche Knolls, Chapopote asphalt volcano investigation type metagenome-assembled genome isolation source sediment core from an oil seep metagenomic source marine sediment metagenome project name Degradation of hydrocarbons by archaea in the Gulf of Mexico sample derived from ERS3467135,ERR3365594,ERR3365595,ERR3341266,ERR3341265,ERR3341270,ERR3341267 sample name gfbio:mag-sample-2:67c8463b-6cbd-4d56-a398-d795175a9500 scientific_name Candidatus Methanolliviera sp. GoM_oil sequencing method Illumina MiSeq and HiSeq 1500 taxonomic identity marker 16S rRNA total depth of water column 2925