<?xml version="1.0" encoding="UTF-8"?>
<SAMPLE_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <SAMPLE alias="SAMEA6114050" accession="ERS3914952">
    <IDENTIFIERS>
      <PRIMARY_ID>ERS3914952</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioSample">SAMEA6114050</EXTERNAL_ID>
    </IDENTIFIERS>
    <SAMPLE_NAME>
      <TAXON_ID>9615</TAXON_ID>
      <SCIENTIFIC_NAME>Canis lupus familiaris</SCIENTIFIC_NAME>
    </SAMPLE_NAME>
    <DESCRIPTION>Whole_canine_blood - Two EDTA blood samples from affected cases and 38 healthy matched controls EDTA blood samples - from frozen.</DESCRIPTION>
    <SAMPLE_ATTRIBUTES>
      <SAMPLE_ATTRIBUTE>
        <TAG>common name</TAG>
        <VALUE>Dog</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sample name</TAG>
        <VALUE>Canine_SBF2</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>scientific name</TAG>
        <VALUE>Canis lupus familiaris</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>submission description</TAG>
        <VALUE>This project reports the first genetic variant in Miniature Schnauzer dogs responsible for the occurrence of a demyelinating peripheral neuropathy with abnormally folded myelin. A genome-wide association study gave an indicative signal on canine chromosome 21. Although the signal was not of genome-wide significance due to the small number of cases, the SBF2 (also known as MTMR13) gene within the region of shared case homozygosity was a strong positional candidate, as 22 genetic variants in the gene have been associated with demyelinating forms of Charcot-Marie-Tooth disease in humans. Sequencing of SBF2 in cases revealed a splice donor site genetic variant, resulting in cryptic splicing and predicted early termination of the protein based on RNA sequencing results.</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>submission identifier</TAG>
        <VALUE>GSB-1323</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>submission title</TAG>
        <VALUE>Charcot-Marie-Tooth type 4B2 demyelinating neuropathy in miniature Schnauzer dogs caused by a novel splicing SBF2 (MTMR13) genetic variant</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sub_species</TAG>
        <VALUE>familiaris</VALUE>
      </SAMPLE_ATTRIBUTE>
    </SAMPLE_ATTRIBUTES>
  </SAMPLE>
</SAMPLE_SET>
