ERS14866734 SAMEA112860076 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860076 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject6_day1 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-25 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day1 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866735 SAMEA112860077 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860077 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject6_day3 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-27 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day3 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866736 SAMEA112860078 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860078 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject6_day4 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-28 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day4 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866737 SAMEA112860079 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860079 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject6_day5 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-29 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day5 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866738 SAMEA112860080 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860080 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject6_day6 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-30 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day6 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866739 SAMEA112860081 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860081 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject6_day7 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-31 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day7 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866740 SAMEA112860082 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860082 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject6_day8 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-01 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day8 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866741 SAMEA112860083 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860083 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject6_day9 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-02 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day9 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866742 SAMEA112860084 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860084 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject6_day10 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-03 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day10 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866743 SAMEA112860085 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860085 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject6_day11 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-04 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day11 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866744 SAMEA112860086 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860086 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject6_day13 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-06 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day13 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866745 SAMEA112860087 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860087 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject6_day14 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-07 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day14 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866746 SAMEA112860088 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860088 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject6_day15 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-08 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day15 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866747 SAMEA112860089 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860089 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject6_day16 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-09 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day16 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866748 SAMEA112860090 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860090 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject6_day17 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-10 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day17 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866749 SAMEA112860091 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860091 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject6_day18 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-11 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day18 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866750 SAMEA112860092 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860092 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject6_day20 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-13 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day20 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866751 SAMEA112860093 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860093 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject6_day21 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-14 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day21 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866752 SAMEA112860094 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860094 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject6_day22 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-15 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day22 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866753 SAMEA112860095 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860095 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject6_day23 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-16 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day23 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866754 SAMEA112860096 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860096 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject6_day25 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-18 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day25 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866755 SAMEA112860097 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860097 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject6_day26 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-19 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day26 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866756 SAMEA112860098 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860098 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject6_day27 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-20 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day27 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866757 SAMEA112860099 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860099 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject6_day28 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-21 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day28 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866758 SAMEA112860100 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860100 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject6_day29 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-22 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day29 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866759 SAMEA112860101 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860101 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject6_day30 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-23 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day30 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866760 SAMEA112860102 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860102 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject6_day31 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-24 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day31 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866761 SAMEA112860103 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860103 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject6_day32 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-25 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day32 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866762 SAMEA112860104 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860104 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject6_day33 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-26 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day33 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866763 SAMEA112860105 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860105 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject6_day34 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-27 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day34 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866764 SAMEA112860106 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860106 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject6_day35 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-28 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day35 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866765 SAMEA112860107 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860107 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject6_day36 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-29 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day36 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866766 SAMEA112860108 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860108 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject6_day37 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-30 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day37 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866767 SAMEA112860109 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860109 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject6_day38 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-01 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day38 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866768 SAMEA112860110 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860110 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject6_day40 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-03 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day40 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866769 SAMEA112860111 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860111 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject6_day41 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-04 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day41 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866770 SAMEA112860112 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860112 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject6_day42 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-05 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21.8 host subject id 6 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject6_day42 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866771 SAMEA112860113 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860113 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject11_day1 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-09-29 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day1 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866772 SAMEA112860114 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860114 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject11_day3 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-01 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day3 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866773 SAMEA112860115 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860115 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject11_day4 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-02 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day4 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866774 SAMEA112860116 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860116 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject11_day5 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-03 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day5 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866775 SAMEA112860117 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860117 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject11_day6 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-04 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day6 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866776 SAMEA112860118 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860118 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject11_day7 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-05 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day7 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866777 SAMEA112860119 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860119 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject11_day9 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-07 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day9 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866778 SAMEA112860120 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860120 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject11_day10 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-08 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day10 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866779 SAMEA112860121 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860121 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject11_day11 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-09 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day11 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866780 SAMEA112860122 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860122 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject11_day13 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-11 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day13 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866781 SAMEA112860123 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860123 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject11_day14 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-12 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day14 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866782 SAMEA112860124 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860124 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject11_day15 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-13 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day15 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866783 SAMEA112860125 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860125 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject11_day16 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-14 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day16 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866784 SAMEA112860126 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860126 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject11_day17 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-15 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day17 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866785 SAMEA112860127 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860127 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject11_day18 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-16 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day18 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866786 SAMEA112860128 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860128 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject11_day19 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-17 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day19 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866787 SAMEA112860129 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860129 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject11_day20 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-18 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day20 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866788 SAMEA112860130 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860130 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject11_day21 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-19 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day21 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866789 SAMEA112860131 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860131 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject11_day23 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-21 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day23 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866790 SAMEA112860132 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860132 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject11_day24 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-22 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day24 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866791 SAMEA112860133 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860133 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject11_day25 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-23 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day25 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866792 SAMEA112860134 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860134 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject11_day26 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-24 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day26 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866793 SAMEA112860135 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860135 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject11_day27 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-25 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day27 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866794 SAMEA112860136 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860136 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject11_day28 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-26 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day28 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866795 SAMEA112860137 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860137 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject11_day29 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-27 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day29 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866796 SAMEA112860138 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860138 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject11_day30 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-28 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day30 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866797 SAMEA112860139 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860139 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject11_day31 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-29 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day31 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866798 SAMEA112860140 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860140 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject11_day32 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-30 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day32 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866799 SAMEA112860141 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860141 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject11_day33 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-31 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day33 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866800 SAMEA112860142 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860142 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject11_day34 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-01 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day34 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866801 SAMEA112860143 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860143 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject11_day35 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-02 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day35 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866802 SAMEA112860144 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860144 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject11_day36 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-03 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day36 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866803 SAMEA112860145 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860145 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject11_day37 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-04 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day37 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866804 SAMEA112860146 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860146 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject11_day38 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-05 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day38 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866805 SAMEA112860147 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860147 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject11_day39 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-06 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day39 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866806 SAMEA112860148 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860148 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject11_day40 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-07 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day40 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866807 SAMEA112860149 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860149 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject11_day41 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-08 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day41 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866808 SAMEA112860150 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860150 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject11_day42 antibiotics past 3 months yes birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-09 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Mycoplasma in the previous 3 months host age 23 host body product vaginal mucus host body site vagina host body-mass index 20 host subject id 11 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject11_day42 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866809 SAMEA112860151 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860151 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day1 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-09-19 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day1 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866810 SAMEA112860152 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860152 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day3 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-09-21 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day3 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866811 SAMEA112860153 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860153 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day4 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-09-22 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day4 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866812 SAMEA112860154 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860154 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day5 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-09-23 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day5 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866813 SAMEA112860155 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860155 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day6 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-09-24 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day6 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866814 SAMEA112860156 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860156 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day7 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-09-25 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day7 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866815 SAMEA112860157 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860157 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day8 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-09-26 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day8 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866816 SAMEA112860158 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860158 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day9 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-09-27 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day9 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866817 SAMEA112860159 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860159 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day10 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-09-28 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day10 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866818 SAMEA112860160 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860160 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day12 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-09-30 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day12 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866819 SAMEA112860161 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860161 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day13 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-01 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day13 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866820 SAMEA112860162 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860162 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day14 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-02 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day14 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866821 SAMEA112860163 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860163 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day15 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-03 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day15 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866822 SAMEA112860164 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860164 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day16 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-04 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day16 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866823 SAMEA112860165 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860165 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day17 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-05 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day17 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866824 SAMEA112860166 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860166 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day18 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-06 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day18 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866825 SAMEA112860167 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860167 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day19 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-07 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day19 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866826 SAMEA112860168 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860168 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day20 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-08 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day20 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866827 SAMEA112860169 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860169 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day21 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-09 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day21 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866828 SAMEA112860170 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860170 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day22 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-10 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day22 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866829 SAMEA112860171 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860171 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day24 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-12 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day24 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866830 SAMEA112860172 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860172 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day25 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-13 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day25 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866831 SAMEA112860173 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860173 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day26 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-14 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day26 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866832 SAMEA112860174 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860174 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day27 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-15 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day27 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866833 SAMEA112860175 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860175 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day28 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-16 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day28 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866834 SAMEA112860176 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860176 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day29 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-17 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day29 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866835 SAMEA112860177 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860177 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day30 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-18 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day30 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866836 SAMEA112860178 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860178 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day31 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-19 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day31 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866837 SAMEA112860179 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860179 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day32 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-20 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day32 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866838 SAMEA112860180 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860180 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day33 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-21 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day33 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866839 SAMEA112860181 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860181 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day34 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-22 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day34 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866840 SAMEA112860182 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860182 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day35 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-23 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day35 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866841 SAMEA112860183 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860183 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day37 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-25 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day37 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866842 SAMEA112860184 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860184 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day38 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-26 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day38 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866843 SAMEA112860185 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860185 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day39 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-27 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day39 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866844 SAMEA112860186 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860186 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day40 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-28 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day40 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866845 SAMEA112860187 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860187 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day41 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-29 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day41 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866846 SAMEA112860188 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860188 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject15_day42 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-10-30 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23.8 host subject id 15 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject15_day42 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14866847 SAMEA112860189 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860189 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject29_day1 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-03 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 27 host body product vaginal mucus host body site vagina host body-mass index 24.2 host subject id 29 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject29_day1 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866848 SAMEA112860190 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860190 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject29_day3 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-05 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 27 host body product vaginal mucus host body site vagina host body-mass index 24.2 host subject id 29 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject29_day3 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866849 SAMEA112860191 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860191 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject29_day4 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-06 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 27 host body product vaginal mucus host body site vagina host body-mass index 24.2 host subject id 29 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject29_day4 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866850 SAMEA112860192 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860192 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject29_day5 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-07 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 27 host body product vaginal mucus host body site vagina host body-mass index 24.2 host subject id 29 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject29_day5 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866851 SAMEA112860193 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860193 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject29_day6 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-08 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 27 host body product vaginal mucus host body site vagina host body-mass index 24.2 host subject id 29 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject29_day6 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866852 SAMEA112860194 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860194 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject29_day7 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-09 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 27 host body product vaginal mucus host body site vagina host body-mass index 24.2 host subject id 29 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject29_day7 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866853 SAMEA112860195 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860195 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject29_day8 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-10 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 27 host body product vaginal mucus host body site vagina host body-mass index 24.2 host subject id 29 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject29_day8 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866854 SAMEA112860196 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860196 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject29_day10 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-12 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 27 host body product vaginal mucus host body site vagina host body-mass index 24.2 host subject id 29 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject29_day10 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866855 SAMEA112860197 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860197 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject29_day13 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-15 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 27 host body product vaginal mucus host body site vagina host body-mass index 24.2 host subject id 29 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject29_day13 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866856 SAMEA112860198 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860198 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject29_day15 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-17 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 27 host body product vaginal mucus host body site vagina host body-mass index 24.2 host subject id 29 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject29_day15 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866857 SAMEA112860199 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860199 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject29_day16 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-18 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 27 host body product vaginal mucus host body site vagina host body-mass index 24.2 host subject id 29 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject29_day16 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866858 SAMEA112860200 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860200 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject29_day17 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-19 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 27 host body product vaginal mucus host body site vagina host body-mass index 24.2 host subject id 29 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject29_day17 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866859 SAMEA112860201 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860201 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject29_day23 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-25 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 27 host body product vaginal mucus host body site vagina host body-mass index 24.2 host subject id 29 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject29_day23 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866860 SAMEA112860202 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860202 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject29_day25 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-27 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 27 host body product vaginal mucus host body site vagina host body-mass index 24.2 host subject id 29 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject29_day25 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866861 SAMEA112860203 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860203 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject29_day26 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-28 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 27 host body product vaginal mucus host body site vagina host body-mass index 24.2 host subject id 29 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject29_day26 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866862 SAMEA112860204 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860204 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject29_day29 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-01 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 27 host body product vaginal mucus host body site vagina host body-mass index 24.2 host subject id 29 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject29_day29 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866863 SAMEA112860205 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860205 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject29_day30 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-02 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 27 host body product vaginal mucus host body site vagina host body-mass index 24.2 host subject id 29 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject29_day30 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866864 SAMEA112860206 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860206 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject29_day32 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-04 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 27 host body product vaginal mucus host body site vagina host body-mass index 24.2 host subject id 29 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject29_day32 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866865 SAMEA112860207 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860207 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject29_day33 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-05 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 27 host body product vaginal mucus host body site vagina host body-mass index 24.2 host subject id 29 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject29_day33 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866866 SAMEA112860208 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860208 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject29_day35 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-07 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 27 host body product vaginal mucus host body site vagina host body-mass index 24.2 host subject id 29 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject29_day35 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866867 SAMEA112860209 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860209 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject29_day36 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-08 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 27 host body product vaginal mucus host body site vagina host body-mass index 24.2 host subject id 29 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject29_day36 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866868 SAMEA112860210 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860210 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject29_day38 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-10 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 27 host body product vaginal mucus host body site vagina host body-mass index 24.2 host subject id 29 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject29_day38 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866869 SAMEA112860211 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860211 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject29_day39 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-11 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 27 host body product vaginal mucus host body site vagina host body-mass index 24.2 host subject id 29 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject29_day39 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866870 SAMEA112860212 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860212 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject29_day40 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-12 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 27 host body product vaginal mucus host body site vagina host body-mass index 24.2 host subject id 29 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject29_day40 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866871 SAMEA112860213 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860213 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject29_day41 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-13 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 27 host body product vaginal mucus host body site vagina host body-mass index 24.2 host subject id 29 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject29_day41 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866872 SAMEA112860214 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860214 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject29_day42 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-14 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 27 host body product vaginal mucus host body site vagina host body-mass index 24.2 host subject id 29 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject29_day42 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866873 SAMEA112860215 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860215 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day1 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-09-19 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day1 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866874 SAMEA112860216 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860216 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day3 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-09-21 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day3 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866875 SAMEA112860217 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860217 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day4 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-09-22 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day4 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866876 SAMEA112860218 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860218 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day5 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-09-23 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day5 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866877 SAMEA112860219 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860219 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day6 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-09-24 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day6 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866878 SAMEA112860220 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860220 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day7 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-09-25 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day7 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866879 SAMEA112860221 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860221 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day8 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-09-26 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day8 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866880 SAMEA112860222 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860222 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day9 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-09-27 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day9 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866881 SAMEA112860223 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860223 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day11 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-09-29 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day11 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866882 SAMEA112860224 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860224 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day12 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-09-30 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day12 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866883 SAMEA112860225 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860225 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day13 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-01 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day13 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866884 SAMEA112860226 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860226 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day14 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-02 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day14 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866885 SAMEA112860227 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860227 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day15 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-03 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day15 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866886 SAMEA112860228 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860228 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day16 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-04 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day16 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866887 SAMEA112860229 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860229 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day17 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-05 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day17 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866888 SAMEA112860230 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860230 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day18 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-06 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day18 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866889 SAMEA112860231 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860231 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day19 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-07 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day19 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866890 SAMEA112860232 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860232 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day21 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-09 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day21 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866891 SAMEA112860233 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860233 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day22 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-10 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day22 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866892 SAMEA112860234 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860234 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day23 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-11 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day23 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866893 SAMEA112860235 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860235 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day24 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-12 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day24 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866894 SAMEA112860236 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860236 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day25 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-13 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day25 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866895 SAMEA112860237 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860237 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day26 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-14 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day26 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866896 SAMEA112860238 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860238 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day27 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-15 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day27 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866897 SAMEA112860239 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860239 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day28 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-16 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day28 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866898 SAMEA112860240 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860240 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day29 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-17 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day29 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866899 SAMEA112860241 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860241 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day30 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-18 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day30 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866900 SAMEA112860242 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860242 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day31 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-19 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day31 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866901 SAMEA112860243 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860243 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day32 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-20 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day32 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866902 SAMEA112860244 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860244 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day33 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-21 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day33 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866903 SAMEA112860245 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860245 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day34 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-22 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day34 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866904 SAMEA112860246 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860246 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day35 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-23 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day35 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866905 SAMEA112860247 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860247 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day36 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-24 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day36 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866906 SAMEA112860248 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860248 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day37 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-25 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day37 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866907 SAMEA112860249 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860249 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day38 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-26 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day38 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866908 SAMEA112860250 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860250 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day39 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-27 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day39 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866909 SAMEA112860251 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860251 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day40 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-28 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day40 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866910 SAMEA112860252 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860252 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day41 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-29 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day41 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866911 SAMEA112860253 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860253 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject46_day42 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-30 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 24 host body product vaginal mucus host body site vagina host body-mass index 22.9 host disease status allergies host subject id 46 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject46_day42 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14866912 SAMEA112860254 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860254 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject51_day5 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-09 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day5 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866913 SAMEA112860255 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860255 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject51_day6 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-10 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day6 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866914 SAMEA112860256 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860256 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject51_day7 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-11 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day7 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866915 SAMEA112860257 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860257 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject51_day8 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-12 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day8 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866916 SAMEA112860258 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860258 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject51_day9 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-13 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day9 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866917 SAMEA112860259 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860259 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject51_day11 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-15 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day11 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866918 SAMEA112860260 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860260 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject51_day12 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-16 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day12 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866919 SAMEA112860261 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860261 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject51_day13 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-17 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day13 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866920 SAMEA112860262 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860262 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject51_day15 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-19 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day15 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866921 SAMEA112860263 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860263 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject51_day16 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-20 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day16 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866922 SAMEA112860264 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860264 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject51_day18 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-22 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day18 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866923 SAMEA112860265 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860265 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject51_day20 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-24 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day20 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866924 SAMEA112860266 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860266 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject51_day21 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-25 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day21 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866925 SAMEA112860267 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860267 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject51_day22 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-26 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day22 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866926 SAMEA112860268 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860268 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject51_day23 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-27 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day23 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866927 SAMEA112860269 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860269 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject51_day24 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-28 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day24 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866928 SAMEA112860270 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860270 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject51_day26 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-30 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day26 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866929 SAMEA112860271 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860271 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject51_day27 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-01 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day27 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866930 SAMEA112860272 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860272 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject51_day28 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-02 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day28 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866931 SAMEA112860273 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860273 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject51_day30 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-04 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day30 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866932 SAMEA112860274 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860274 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject51_day31 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-05 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day31 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866933 SAMEA112860275 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860275 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject51_day32 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-06 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day32 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866934 SAMEA112860276 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860276 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject51_day33 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-07 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day33 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866935 SAMEA112860277 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860277 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject51_day35 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-09 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day35 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866936 SAMEA112860278 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860278 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject51_day36 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-10 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day36 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866937 SAMEA112860279 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860279 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject51_day37 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-11 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day37 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866938 SAMEA112860280 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860280 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject51_day38 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-12 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day38 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866939 SAMEA112860281 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860281 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject51_day39 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-13 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day39 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866940 SAMEA112860282 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860282 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject51_day40 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-14 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day40 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866941 SAMEA112860283 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860283 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject51_day41 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-15 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day41 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866942 SAMEA112860284 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860284 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject51_day42 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-16 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 23 host subject id 51 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject51_day42 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14866943 SAMEA112860285 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860285 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day1 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-09-27 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day1 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866944 SAMEA112860286 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860286 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day3 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-09-29 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day3 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866946 SAMEA112860288 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860288 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day5 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-01 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day5 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866947 SAMEA112860289 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860289 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day6 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-02 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day6 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866948 SAMEA112860290 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860290 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day8 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-04 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day8 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866945 SAMEA112860287 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860287 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day4 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-09-30 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day4 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866949 SAMEA112860291 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860291 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day9 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-05 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day9 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866950 SAMEA112860292 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860292 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day10 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-06 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day10 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866951 SAMEA112860293 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860293 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day11 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-07 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day11 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866952 SAMEA112860294 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860294 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day12 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-08 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day12 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866953 SAMEA112860295 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860295 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day13 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-09 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day13 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866954 SAMEA112860296 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860296 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day14 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-10 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day14 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866955 SAMEA112860297 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860297 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day15 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-11 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day15 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866956 SAMEA112860298 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860298 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day16 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-12 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day16 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866957 SAMEA112860299 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860299 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day18 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-14 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day18 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866958 SAMEA112860300 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860300 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day19 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-15 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day19 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866959 SAMEA112860301 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860301 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day20 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-16 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day20 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866960 SAMEA112860302 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860302 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day21 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-17 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day21 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866961 SAMEA112860303 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860303 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day22 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-18 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day22 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866962 SAMEA112860304 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860304 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day23 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-19 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day23 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866963 SAMEA112860305 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860305 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day24 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-20 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day24 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866964 SAMEA112860306 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860306 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day25 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-21 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day25 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866965 SAMEA112860307 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860307 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day26 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-22 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day26 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866966 SAMEA112860308 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860308 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day27 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-23 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day27 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866967 SAMEA112860309 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860309 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day28 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-24 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day28 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866968 SAMEA112860310 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860310 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day29 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-25 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day29 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866969 SAMEA112860311 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860311 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day30 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-26 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day30 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866970 SAMEA112860312 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860312 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day31 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-27 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day31 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866971 SAMEA112860313 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860313 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day32 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-28 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day32 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866972 SAMEA112860314 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860314 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day33 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-29 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day33 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866973 SAMEA112860315 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860315 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day34 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-30 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day34 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866974 SAMEA112860316 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860316 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day35 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-31 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day35 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866975 SAMEA112860317 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860317 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day36 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-01 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day36 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866976 SAMEA112860318 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860318 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day37 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-02 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day37 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866977 SAMEA112860319 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860319 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day38 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-03 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day38 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866978 SAMEA112860320 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860320 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day39 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-04 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day39 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866979 SAMEA112860321 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860321 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day40 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-05 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day40 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866980 SAMEA112860322 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860322 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject71_day41 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-06 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day41 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866981 SAMEA112860323 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:33Z ENA-LAST-UPDATE 2023-05-04T16:18:33Z External Id SAMEA112860323 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:33Z INSDC last update 2023-05-04T16:18:33Z INSDC status public Submitter Id subject71_day42 antibiotics past 3 months yes birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-07 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 gynecological disorder Chlamydia in the previous 3 months host age 20 host body product vaginal mucus host body site vagina host subject id 71 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject71_day42 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status seldom ERS14866982 SAMEA112860324 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860324 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject80_day3 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-03 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21 host subject id 80 local environmental context mid fornix menstrual hygiene product pad, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject80_day3 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status weekly ERS14866983 SAMEA112860325 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860325 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject80_day5 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-05 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21 host subject id 80 local environmental context mid fornix menstrual hygiene product pad, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject80_day5 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status weekly ERS14866984 SAMEA112860326 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860326 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject80_day7 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-07 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21 host subject id 80 local environmental context mid fornix menstrual hygiene product pad, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject80_day7 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status weekly ERS14866985 SAMEA112860327 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860327 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject80_day11 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-11 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21 host subject id 80 local environmental context mid fornix menstrual hygiene product pad, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject80_day11 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status weekly ERS14866986 SAMEA112860328 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860328 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject80_day12 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-12 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21 host subject id 80 local environmental context mid fornix menstrual hygiene product pad, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject80_day12 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status weekly ERS14866987 SAMEA112860329 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860329 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject80_day13 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-13 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21 host subject id 80 local environmental context mid fornix menstrual hygiene product pad, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject80_day13 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status weekly ERS14866988 SAMEA112860330 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860330 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject80_day14 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-14 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21 host subject id 80 local environmental context mid fornix menstrual hygiene product pad, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject80_day14 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status weekly ERS14866989 SAMEA112860331 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860331 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject80_day15 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-15 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21 host subject id 80 local environmental context mid fornix menstrual hygiene product pad, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject80_day15 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status weekly ERS14866990 SAMEA112860332 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860332 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject80_day17 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-17 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21 host subject id 80 local environmental context mid fornix menstrual hygiene product pad, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject80_day17 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status weekly ERS14866991 SAMEA112860333 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860333 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject80_day18 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-18 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21 host subject id 80 local environmental context mid fornix menstrual hygiene product pad, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject80_day18 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status weekly ERS14866992 SAMEA112860334 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860334 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject80_day19 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-19 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21 host subject id 80 local environmental context mid fornix menstrual hygiene product pad, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject80_day19 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status weekly ERS14866993 SAMEA112860335 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860335 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject80_day20 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-20 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21 host subject id 80 local environmental context mid fornix menstrual hygiene product pad, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject80_day20 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status weekly ERS14866994 SAMEA112860336 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860336 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject80_day23 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-23 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21 host subject id 80 local environmental context mid fornix menstrual hygiene product pad, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject80_day23 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status weekly ERS14866995 SAMEA112860337 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860337 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject80_day28 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-28 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21 host subject id 80 local environmental context mid fornix menstrual hygiene product pad, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject80_day28 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status weekly ERS14866996 SAMEA112860338 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860338 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject80_day29 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-29 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21 host subject id 80 local environmental context mid fornix menstrual hygiene product pad, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject80_day29 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status weekly ERS14866997 SAMEA112860339 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860339 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject80_day30 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-30 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21 host subject id 80 local environmental context mid fornix menstrual hygiene product pad, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject80_day30 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status weekly ERS14866998 SAMEA112860340 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860340 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject80_day31 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-10-31 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21 host subject id 80 local environmental context mid fornix menstrual hygiene product pad, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject80_day31 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status weekly ERS14866999 SAMEA112860341 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860341 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject80_day32 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-01 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21 host subject id 80 local environmental context mid fornix menstrual hygiene product pad, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject80_day32 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status weekly ERS14867000 SAMEA112860342 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860342 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject80_day33 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-02 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21 host subject id 80 local environmental context mid fornix menstrual hygiene product pad, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject80_day33 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status weekly ERS14867001 SAMEA112860343 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860343 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject80_day34 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-03 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21 host subject id 80 local environmental context mid fornix menstrual hygiene product pad, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject80_day34 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status weekly ERS14867002 SAMEA112860344 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860344 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject80_day35 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-04 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21 host subject id 80 local environmental context mid fornix menstrual hygiene product pad, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject80_day35 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status weekly ERS14867003 SAMEA112860345 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860345 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject80_day36 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-05 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21 host subject id 80 local environmental context mid fornix menstrual hygiene product pad, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject80_day36 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status weekly ERS14867004 SAMEA112860346 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860346 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject80_day37 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-06 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21 host subject id 80 local environmental context mid fornix menstrual hygiene product pad, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject80_day37 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status weekly ERS14867005 SAMEA112860347 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860347 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject80_day38 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-07 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21 host subject id 80 local environmental context mid fornix menstrual hygiene product pad, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject80_day38 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status weekly ERS14867006 SAMEA112860348 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860348 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject80_day39 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-08 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21 host subject id 80 local environmental context mid fornix menstrual hygiene product pad, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject80_day39 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status weekly ERS14867007 SAMEA112860349 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860349 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject80_day40 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-09 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21 host subject id 80 local environmental context mid fornix menstrual hygiene product pad, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject80_day40 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status weekly ERS14867008 SAMEA112860350 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860350 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject80_day41 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-10 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21 host subject id 80 local environmental context mid fornix menstrual hygiene product pad, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject80_day41 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status weekly ERS14867009 SAMEA112860351 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860351 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject80_day42 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-11 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 21 host subject id 80 local environmental context mid fornix menstrual hygiene product pad, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject80_day42 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status weekly ERS14867010 SAMEA112860352 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860352 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day1 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-25 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day1 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867011 SAMEA112860353 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860353 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day3 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-27 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day3 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867012 SAMEA112860354 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860354 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day4 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-28 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day4 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867013 SAMEA112860355 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860355 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day5 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-29 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day5 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867014 SAMEA112860356 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860356 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day6 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-30 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day6 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867015 SAMEA112860357 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860357 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day7 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-10-31 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day7 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867016 SAMEA112860358 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860358 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day8 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-01 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day8 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867017 SAMEA112860359 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860359 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day10 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-03 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day10 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867018 SAMEA112860360 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860360 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day11 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-04 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day11 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867019 SAMEA112860361 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860361 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day12 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-05 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day12 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867020 SAMEA112860362 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860362 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day13 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-06 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day13 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867021 SAMEA112860363 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860363 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day14 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-07 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day14 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867022 SAMEA112860364 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860364 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day15 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-08 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day15 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867023 SAMEA112860365 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860365 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day16 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-09 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day16 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867024 SAMEA112860366 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860366 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day17 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-10 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day17 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867025 SAMEA112860367 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860367 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day18 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-11 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day18 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867026 SAMEA112860368 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860368 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day19 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-12 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day19 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867027 SAMEA112860369 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860369 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day20 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-13 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day20 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867028 SAMEA112860370 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860370 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day22 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-15 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day22 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867029 SAMEA112860371 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860371 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day23 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-16 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day23 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867030 SAMEA112860372 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860372 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day24 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-17 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day24 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867031 SAMEA112860373 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860373 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day25 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-18 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day25 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867032 SAMEA112860374 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860374 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day26 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-19 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day26 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867033 SAMEA112860375 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860375 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day27 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-20 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day27 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867034 SAMEA112860376 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860376 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day28 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-21 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day28 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867035 SAMEA112860377 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860377 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day29 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-22 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day29 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867036 SAMEA112860378 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860378 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day30 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-23 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day30 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867037 SAMEA112860379 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860379 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day31 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-24 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day31 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867038 SAMEA112860380 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860380 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day32 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-25 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day32 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867039 SAMEA112860381 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860381 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day33 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-26 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day33 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867040 SAMEA112860382 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860382 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject91_day34 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-27 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day34 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867041 SAMEA112860383 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860383 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject91_day35 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-28 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day35 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867042 SAMEA112860384 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860384 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject91_day36 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-29 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day36 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867043 SAMEA112860385 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860385 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject91_day37 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-30 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day37 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867044 SAMEA112860386 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860386 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject91_day38 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-01 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day38 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867045 SAMEA112860387 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860387 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject91_day39 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-02 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day39 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867046 SAMEA112860388 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860388 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject91_day40 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-03 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day40 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867047 SAMEA112860389 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860389 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject91_day41 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-04 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day41 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867048 SAMEA112860390 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860390 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject91_day42 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-05 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 19.6 host disease status Raynaud's syndrome host subject id 91 local environmental context mid fornix pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject91_day42 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867049 SAMEA112860391 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860391 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day3 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-22 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day3 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867050 SAMEA112860392 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860392 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day4 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-23 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day4 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867051 SAMEA112860393 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860393 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day5 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-24 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day5 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867052 SAMEA112860394 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860394 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day6 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-25 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day6 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867053 SAMEA112860395 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860395 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day7 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-26 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day7 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867054 SAMEA112860396 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860396 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day8 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-27 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day8 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867055 SAMEA112860397 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860397 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day10 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-29 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day10 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867056 SAMEA112860398 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860398 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day11 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-11-30 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day11 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867057 SAMEA112860399 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860399 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day12 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-01 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day12 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867058 SAMEA112860400 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860400 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day13 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-02 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day13 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867059 SAMEA112860401 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860401 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day14 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-03 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day14 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867060 SAMEA112860402 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860402 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day15 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-04 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day15 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867061 SAMEA112860403 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860403 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day17 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-06 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day17 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867062 SAMEA112860404 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860404 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day18 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-07 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day18 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867063 SAMEA112860405 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860405 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day19 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-08 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day19 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867064 SAMEA112860406 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860406 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day20 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-09 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day20 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867065 SAMEA112860407 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860407 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day21 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-10 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day21 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867066 SAMEA112860408 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860408 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day23 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-12 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day23 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867067 SAMEA112860409 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860409 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day24 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-13 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day24 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867068 SAMEA112860410 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860410 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day25 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-14 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day25 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867069 SAMEA112860411 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860411 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day26 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-15 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day26 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867070 SAMEA112860412 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860412 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day27 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-16 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day27 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867071 SAMEA112860413 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860413 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day28 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-17 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day28 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867072 SAMEA112860414 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860414 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day29 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-18 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day29 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867073 SAMEA112860415 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860415 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day30 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-19 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day30 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867074 SAMEA112860416 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860416 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day31 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-20 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day31 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867075 SAMEA112860417 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860417 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day32 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-21 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day32 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867076 SAMEA112860418 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860418 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day33 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-22 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day33 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867077 SAMEA112860419 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860419 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day34 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-23 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day34 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867078 SAMEA112860420 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860420 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day35 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-24 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day35 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867079 SAMEA112860421 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860421 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day36 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-25 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day36 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867080 SAMEA112860422 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860422 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day37 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-26 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day37 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867081 SAMEA112860423 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860423 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day38 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-27 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day38 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867082 SAMEA112860424 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860424 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day39 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-28 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day39 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867083 SAMEA112860425 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860425 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day40 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-29 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day40 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867084 SAMEA112860426 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860426 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day41 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-30 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day41 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867085 SAMEA112860427 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860427 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject126_day42 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2017-12-31 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host body-mass index 18.7 host subject id 126 local environmental context mid fornix menstrual hygiene product cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject126_day42 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867086 SAMEA112860428 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860428 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject128_day3 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-23 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 26.1 host subject id 128 local environmental context mid fornix menstrual hygiene product pad, tampon, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject128_day3 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867087 SAMEA112860429 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860429 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject128_day4 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-24 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 26.1 host subject id 128 local environmental context mid fornix menstrual hygiene product pad, tampon, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject128_day4 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867088 SAMEA112860430 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860430 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject128_day5 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-25 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 26.1 host subject id 128 local environmental context mid fornix menstrual hygiene product pad, tampon, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject128_day5 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867089 SAMEA112860431 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860431 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject128_day6 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-26 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 26.1 host subject id 128 local environmental context mid fornix menstrual hygiene product pad, tampon, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject128_day6 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867090 SAMEA112860432 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860432 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject128_day7 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-27 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 26.1 host subject id 128 local environmental context mid fornix menstrual hygiene product pad, tampon, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject128_day7 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867091 SAMEA112860433 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860433 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject128_day8 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-28 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 26.1 host subject id 128 local environmental context mid fornix menstrual hygiene product pad, tampon, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject128_day8 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867092 SAMEA112860434 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860434 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject128_day9 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-11-29 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 26.1 host subject id 128 local environmental context mid fornix menstrual hygiene product pad, tampon, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject128_day9 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867093 SAMEA112860435 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860435 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject128_day11 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-01 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 26.1 host subject id 128 local environmental context mid fornix menstrual hygiene product pad, tampon, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject128_day11 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867094 SAMEA112860436 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860436 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject128_day12 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-02 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 26.1 host subject id 128 local environmental context mid fornix menstrual hygiene product pad, tampon, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject128_day12 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867095 SAMEA112860437 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860437 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject128_day13 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-03 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 26.1 host subject id 128 local environmental context mid fornix menstrual hygiene product pad, tampon, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject128_day13 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867096 SAMEA112860438 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860438 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject128_day14 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-04 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 26.1 host subject id 128 local environmental context mid fornix menstrual hygiene product pad, tampon, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject128_day14 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867097 SAMEA112860439 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:33Z ENA-LAST-UPDATE 2023-05-04T16:18:33Z External Id SAMEA112860439 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:33Z INSDC last update 2023-05-04T16:18:33Z INSDC status public Submitter Id subject128_day15 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-05 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 26.1 host subject id 128 local environmental context mid fornix menstrual hygiene product pad, tampon, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject128_day15 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867098 SAMEA112860440 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:33Z ENA-LAST-UPDATE 2023-05-04T16:18:33Z External Id SAMEA112860440 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:33Z INSDC last update 2023-05-04T16:18:33Z INSDC status public Submitter Id subject128_day17 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-07 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 26.1 host subject id 128 local environmental context mid fornix menstrual hygiene product pad, tampon, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject128_day17 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867099 SAMEA112860441 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:33Z ENA-LAST-UPDATE 2023-05-04T16:18:33Z External Id SAMEA112860441 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:33Z INSDC last update 2023-05-04T16:18:33Z INSDC status public Submitter Id subject128_day18 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-08 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 26.1 host subject id 128 local environmental context mid fornix menstrual hygiene product pad, tampon, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject128_day18 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867100 SAMEA112860442 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:33Z ENA-LAST-UPDATE 2023-05-04T16:18:33Z External Id SAMEA112860442 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:33Z INSDC last update 2023-05-04T16:18:33Z INSDC status public Submitter Id subject128_day19 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-09 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 26.1 host subject id 128 local environmental context mid fornix menstrual hygiene product pad, tampon, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject128_day19 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867101 SAMEA112860443 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:33Z ENA-LAST-UPDATE 2023-05-04T16:18:33Z External Id SAMEA112860443 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:33Z INSDC last update 2023-05-04T16:18:33Z INSDC status public Submitter Id subject128_day21 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-11 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 26.1 host subject id 128 local environmental context mid fornix menstrual hygiene product pad, tampon, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject128_day21 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867102 SAMEA112860444 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:33Z ENA-LAST-UPDATE 2023-05-04T16:18:33Z External Id SAMEA112860444 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:33Z INSDC last update 2023-05-04T16:18:33Z INSDC status public Submitter Id subject128_day23 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-13 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 26.1 host subject id 128 local environmental context mid fornix menstrual hygiene product pad, tampon, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject128_day23 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867103 SAMEA112860445 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:33Z ENA-LAST-UPDATE 2023-05-04T16:18:33Z External Id SAMEA112860445 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:33Z INSDC last update 2023-05-04T16:18:33Z INSDC status public Submitter Id subject128_day24 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-14 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 26.1 host subject id 128 local environmental context mid fornix menstrual hygiene product pad, tampon, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject128_day24 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867104 SAMEA112860446 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:33Z ENA-LAST-UPDATE 2023-05-04T16:18:33Z External Id SAMEA112860446 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:33Z INSDC last update 2023-05-04T16:18:33Z INSDC status public Submitter Id subject128_day25 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-15 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 26.1 host subject id 128 local environmental context mid fornix menstrual hygiene product pad, tampon, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject128_day25 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867105 SAMEA112860447 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860447 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject128_day26 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-16 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 26.1 host subject id 128 local environmental context mid fornix menstrual hygiene product pad, tampon, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject128_day26 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867106 SAMEA112860448 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860448 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject128_day27 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-17 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 26.1 host subject id 128 local environmental context mid fornix menstrual hygiene product pad, tampon, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject128_day27 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867107 SAMEA112860449 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860449 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject128_day28 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-18 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 26.1 host subject id 128 local environmental context mid fornix menstrual hygiene product pad, tampon, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject128_day28 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867108 SAMEA112860450 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860450 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject128_day38 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-28 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 26.1 host subject id 128 local environmental context mid fornix menstrual hygiene product pad, tampon, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject128_day38 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867109 SAMEA112860451 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860451 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject128_day40 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-30 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 26.1 host subject id 128 local environmental context mid fornix menstrual hygiene product pad, tampon, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject128_day40 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867110 SAMEA112860452 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860452 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject128_day42 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2018-01-01 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 26.1 host subject id 128 local environmental context mid fornix menstrual hygiene product pad, tampon, cup pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject128_day42 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867111 SAMEA112860453 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860453 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject139_day1 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-11-30 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day1 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867112 SAMEA112860454 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860454 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject139_day3 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-02 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day3 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867113 SAMEA112860455 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860455 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day4 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-03 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day4 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867114 SAMEA112860456 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860456 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day5 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-04 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day5 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867115 SAMEA112860457 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860457 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day6 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-05 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day6 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867116 SAMEA112860458 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860458 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day7 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-06 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day7 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867117 SAMEA112860459 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860459 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day8 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-07 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day8 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867118 SAMEA112860460 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860460 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day9 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-08 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day9 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867119 SAMEA112860461 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860461 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day10 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-09 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day10 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867120 SAMEA112860462 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860462 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day11 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-10 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day11 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867121 SAMEA112860463 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860463 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day12 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-11 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day12 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867122 SAMEA112860464 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860464 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day14 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-13 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day14 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867123 SAMEA112860465 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860465 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day15 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-14 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day15 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867124 SAMEA112860466 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860466 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day16 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-15 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day16 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867125 SAMEA112860467 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860467 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day17 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-16 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day17 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867126 SAMEA112860468 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860468 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day18 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-17 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day18 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867127 SAMEA112860469 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860469 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day20 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-19 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day20 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867128 SAMEA112860470 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860470 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day21 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-20 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day21 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867129 SAMEA112860471 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860471 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day22 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-21 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day22 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867130 SAMEA112860472 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860472 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day23 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-22 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day23 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867131 SAMEA112860473 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860473 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day24 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-23 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day24 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867132 SAMEA112860474 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860474 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day25 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-24 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day25 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867133 SAMEA112860475 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860475 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day26 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-25 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day26 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867134 SAMEA112860476 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860476 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day27 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-26 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day27 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867135 SAMEA112860477 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860477 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day28 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-27 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day28 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867136 SAMEA112860478 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860478 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day29 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-28 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day29 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867137 SAMEA112860479 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860479 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day30 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-29 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day30 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867138 SAMEA112860480 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860480 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day31 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-30 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day31 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867139 SAMEA112860481 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860481 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day32 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-31 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day32 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867140 SAMEA112860482 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860482 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day33 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2018-01-01 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day33 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867141 SAMEA112860483 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860483 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day34 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2018-01-02 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day34 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867142 SAMEA112860484 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860484 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day35 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2018-01-03 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day35 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867143 SAMEA112860485 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860485 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day37 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2018-01-05 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day37 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867144 SAMEA112860486 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860486 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day38 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2018-01-06 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day38 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867145 SAMEA112860487 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860487 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day39 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2018-01-07 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day39 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867146 SAMEA112860488 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860488 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day40 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2018-01-08 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day40 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867147 SAMEA112860489 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860489 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day41 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2018-01-09 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day41 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867148 SAMEA112860490 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860490 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject139_day42 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2018-01-10 douche never drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 26 host body product vaginal mucus host body site vagina host body-mass index 23.3 host subject id 139 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject139_day42 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867149 SAMEA112860491 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860491 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject150_day1 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-11 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day1 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867150 SAMEA112860492 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860492 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject150_day3 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-13 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day3 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867151 SAMEA112860493 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860493 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject150_day4 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-14 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day4 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867152 SAMEA112860494 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860494 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject150_day6 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-16 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day6 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867153 SAMEA112860495 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860495 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject150_day7 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-17 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day7 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867154 SAMEA112860496 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860496 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject150_day9 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-19 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day9 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867155 SAMEA112860497 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860497 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject150_day10 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-20 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day10 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867156 SAMEA112860498 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860498 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject150_day11 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-21 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day11 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867157 SAMEA112860499 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860499 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject150_day12 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-22 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day12 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867158 SAMEA112860500 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860500 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject150_day13 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-23 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day13 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867159 SAMEA112860501 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860501 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject150_day14 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-24 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day14 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867160 SAMEA112860502 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860502 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject150_day16 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-26 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day16 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867161 SAMEA112860503 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860503 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject150_day18 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-28 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day18 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867162 SAMEA112860504 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860504 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject150_day19 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-29 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day19 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867163 SAMEA112860505 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860505 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject150_day20 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-30 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day20 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867164 SAMEA112860506 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860506 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject150_day21 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2017-12-31 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day21 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867165 SAMEA112860507 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860507 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject150_day22 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2018-01-01 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day22 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867166 SAMEA112860508 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860508 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject150_day23 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2018-01-02 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day23 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867167 SAMEA112860509 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860509 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject150_day24 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2018-01-03 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day24 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867168 SAMEA112860510 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860510 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject150_day25 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2018-01-04 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day25 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867169 SAMEA112860511 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860511 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject150_day26 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2018-01-05 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day26 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867170 SAMEA112860512 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860512 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject150_day27 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2018-01-06 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day27 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867171 SAMEA112860513 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860513 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject150_day28 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2018-01-07 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day28 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867172 SAMEA112860514 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860514 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject150_day29 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2018-01-08 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day29 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867173 SAMEA112860515 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860515 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject150_day30 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2018-01-09 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day30 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867174 SAMEA112860516 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860516 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject150_day31 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2018-01-10 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day31 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867175 SAMEA112860517 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860517 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject150_day32 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2018-01-11 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day32 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867176 SAMEA112860518 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860518 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject150_day33 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2018-01-12 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day33 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867177 SAMEA112860519 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860519 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject150_day35 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2018-01-14 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day35 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867178 SAMEA112860520 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860520 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject150_day36 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2018-01-15 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day36 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867179 SAMEA112860521 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860521 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject150_day37 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2018-01-16 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day37 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867180 SAMEA112860522 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860522 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject150_day38 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2018-01-17 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day38 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867181 SAMEA112860523 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860523 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject150_day39 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2018-01-18 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day39 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867182 SAMEA112860524 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860524 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject150_day40 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2018-01-19 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day40 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867183 SAMEA112860525 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860525 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject150_day41 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2018-01-20 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day41 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867184 SAMEA112860526 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860526 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject150_day42 antibiotics past 3 months no birth control Non-hormonal broad-scale environmental context vagina collection date 2018-01-21 douche twice weekly drinking habits light environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 20 host body product vaginal mucus host body site vagina host body-mass index 19.7 host subject id 150 local environmental context mid fornix menstrual hygiene product pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject150_day42 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status never ERS14867185 SAMEA112860527 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860527 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day1 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-18 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day1 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867186 SAMEA112860528 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860528 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day3 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-20 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day3 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867187 SAMEA112860529 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860529 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day4 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-21 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day4 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867188 SAMEA112860530 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860530 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day5 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-22 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day5 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867189 SAMEA112860531 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860531 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day6 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-23 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day6 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867190 SAMEA112860532 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860532 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day7 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-24 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day7 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867191 SAMEA112860533 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860533 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day8 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-25 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day8 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867192 SAMEA112860534 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860534 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day9 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-26 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day9 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867193 SAMEA112860535 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860535 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day11 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-28 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day11 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867194 SAMEA112860536 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860536 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day12 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-29 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day12 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867195 SAMEA112860537 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860537 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day13 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-30 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day13 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867196 SAMEA112860538 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860538 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day14 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2017-12-31 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day14 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867197 SAMEA112860539 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860539 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day15 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2018-01-01 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day15 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867198 SAMEA112860540 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860540 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day16 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2018-01-02 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day16 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867199 SAMEA112860541 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860541 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day17 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2018-01-03 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day17 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867200 SAMEA112860542 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860542 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day19 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2018-01-05 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day19 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867201 SAMEA112860543 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860543 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day20 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2018-01-06 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day20 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867202 SAMEA112860544 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860544 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day27 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2018-01-13 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day27 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867203 SAMEA112860545 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860545 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day28 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2018-01-14 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day28 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867204 SAMEA112860546 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860546 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day29 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2018-01-15 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day29 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867205 SAMEA112860547 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860547 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day30 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2018-01-16 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day30 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867206 SAMEA112860548 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860548 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day31 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2018-01-17 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day31 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867207 SAMEA112860549 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860549 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day32 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2018-01-18 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day32 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867208 SAMEA112860550 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860550 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day33 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2018-01-19 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day33 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867209 SAMEA112860551 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860551 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day34 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2018-01-20 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day34 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867210 SAMEA112860552 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860552 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day35 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2018-01-21 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day35 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867211 SAMEA112860553 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860553 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day36 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2018-01-22 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day36 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867212 SAMEA112860554 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860554 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day37 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2018-01-23 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day37 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867213 SAMEA112860555 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860555 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day38 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2018-01-24 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day38 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867214 SAMEA112860556 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860556 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day39 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2018-01-25 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day39 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867215 SAMEA112860557 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860557 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day40 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2018-01-26 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day40 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867216 SAMEA112860558 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860558 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day41 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2018-01-27 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day41 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867217 SAMEA112860559 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860559 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject155_day42 antibiotics past 3 months no birth control combined oral contraceptive broad-scale environmental context vagina collection date 2018-01-28 douche never drinking habits moderate environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 22 host body product vaginal mucus host body site vagina host disease status allergies host subject id 155 local environmental context mid fornix menstrual hygiene product tampon, pad pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject155_day42 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status previously ERS14867218 SAMEA112860560 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860560 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject160_day3 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-01-04 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day3 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867219 SAMEA112860561 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860561 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject160_day4 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-01-05 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day4 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867220 SAMEA112860562 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860562 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject160_day5 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-01-06 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day5 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867221 SAMEA112860563 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860563 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject160_day7 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-01-08 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day7 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867222 SAMEA112860564 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860564 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject160_day8 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-01-09 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day8 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867223 SAMEA112860565 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860565 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject160_day9 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-01-10 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day9 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867224 SAMEA112860566 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:32Z ENA-LAST-UPDATE 2023-05-04T16:18:32Z External Id SAMEA112860566 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:32Z INSDC last update 2023-05-04T16:18:32Z INSDC status public Submitter Id subject160_day10 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-01-11 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day10 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867225 SAMEA112860567 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:33Z ENA-LAST-UPDATE 2023-05-04T16:18:33Z External Id SAMEA112860567 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:33Z INSDC last update 2023-05-04T16:18:33Z INSDC status public Submitter Id subject160_day11 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-01-12 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day11 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867226 SAMEA112860568 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:33Z ENA-LAST-UPDATE 2023-05-04T16:18:33Z External Id SAMEA112860568 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:33Z INSDC last update 2023-05-04T16:18:33Z INSDC status public Submitter Id subject160_day12 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-01-13 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day12 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867227 SAMEA112860569 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:33Z ENA-LAST-UPDATE 2023-05-04T16:18:33Z External Id SAMEA112860569 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:33Z INSDC last update 2023-05-04T16:18:33Z INSDC status public Submitter Id subject160_day14 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-01-15 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day14 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867228 SAMEA112860570 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:33Z ENA-LAST-UPDATE 2023-05-04T16:18:33Z External Id SAMEA112860570 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:33Z INSDC last update 2023-05-04T16:18:33Z INSDC status public Submitter Id subject160_day15 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-01-16 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day15 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867229 SAMEA112860571 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:33Z ENA-LAST-UPDATE 2023-05-04T16:18:33Z External Id SAMEA112860571 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:33Z INSDC last update 2023-05-04T16:18:33Z INSDC status public Submitter Id subject160_day16 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-01-17 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day16 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867230 SAMEA112860572 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:33Z ENA-LAST-UPDATE 2023-05-04T16:18:33Z External Id SAMEA112860572 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:33Z INSDC last update 2023-05-04T16:18:33Z INSDC status public Submitter Id subject160_day17 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-01-18 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day17 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867231 SAMEA112860573 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:33Z ENA-LAST-UPDATE 2023-05-04T16:18:33Z External Id SAMEA112860573 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:33Z INSDC last update 2023-05-04T16:18:33Z INSDC status public Submitter Id subject160_day18 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-01-19 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day18 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867232 SAMEA112860574 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:33Z ENA-LAST-UPDATE 2023-05-04T16:18:33Z External Id SAMEA112860574 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:33Z INSDC last update 2023-05-04T16:18:33Z INSDC status public Submitter Id subject160_day19 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-01-20 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day19 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867233 SAMEA112860575 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860575 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject160_day21 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-01-22 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day21 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867234 SAMEA112860576 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860576 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject160_day22 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-01-23 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day22 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867235 SAMEA112860577 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860577 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject160_day23 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-01-24 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day23 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867236 SAMEA112860578 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860578 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject160_day24 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-01-25 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day24 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867237 SAMEA112860579 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860579 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject160_day25 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-01-26 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day25 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867238 SAMEA112860580 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860580 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject160_day27 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-01-28 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day27 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867239 SAMEA112860581 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860581 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject160_day28 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-01-29 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day28 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867240 SAMEA112860582 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:30Z ENA-LAST-UPDATE 2023-05-04T16:18:30Z External Id SAMEA112860582 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:30Z INSDC last update 2023-05-04T16:18:30Z INSDC status public Submitter Id subject160_day29 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-01-30 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day29 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867241 SAMEA112860583 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860583 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject160_day30 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-01-31 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day30 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867242 SAMEA112860584 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860584 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject160_day31 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-02-01 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day31 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867243 SAMEA112860585 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860585 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject160_day32 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-02-02 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day32 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867244 SAMEA112860586 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860586 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject160_day33 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-02-03 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day33 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867245 SAMEA112860587 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860587 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject160_day34 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-02-04 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day34 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867246 SAMEA112860588 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860588 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject160_day35 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-02-05 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day35 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867247 SAMEA112860589 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860589 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject160_day36 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-02-06 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day36 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867248 SAMEA112860590 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860590 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject160_day37 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-02-07 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day37 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867249 SAMEA112860591 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860591 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject160_day38 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-02-08 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day38 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867250 SAMEA112860592 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860592 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject160_day39 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-02-09 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day39 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867251 SAMEA112860593 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860593 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject160_day40 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-02-10 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day40 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867252 SAMEA112860594 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860594 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject160_day41 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-02-11 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day41 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily ERS14867253 SAMEA112860595 1549736 vaginal metagenome ENA-FIRST-PUBLIC 2023-05-04T16:18:31Z ENA-LAST-UPDATE 2023-05-04T16:18:31Z External Id SAMEA112860595 INSDC center name Centre for Translational Microbiome Research (CTMR) INSDC first public 2023-05-04T16:18:31Z INSDC last update 2023-05-04T16:18:31Z INSDC status public Submitter Id subject160_day42 antibiotics past 3 months no birth control levonorgestrel intra-uterine system broad-scale environmental context vagina collection date 2018-02-12 douche never drinking habits heavy environmental medium vaginal swab geographic location (country and/or sea) Denmark geographic location (latitude) 55.67 geographic location (longitude) 12.57 host age 23 host body product vaginal mucus host body site vagina host body-mass index 21.6 host subject id 160 local environmental context mid fornix menstrual hygiene product tampon pcr primers 341F: 5'-CCTACGGGNGGCWGCAG-3' / 805R: 5'-GGACTACHVGGGTWTCTAAT-3' pregnancy no project name MiMens sample collection device FLOQSwab (COPAN diagnostics) sample collection method Swab sample name subject160_day42 sample storage medium DNA/RNA-shield (Zymo Research) sample storage temperature '-20 / -80 scientific_name vaginal metagenome sequencing method Illumina MiSeq PE300 smoking status daily