<?xml version="1.0" encoding="UTF-8"?>
<STUDY_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <STUDY alias="ena-STUDY-INRA-CMSE-27-06-2013-16:41:16:629-101" center_name="INRA-CMSE" accession="ERP003488">
    <IDENTIFIERS>
      <PRIMARY_ID>ERP003488</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJEB4220</EXTERNAL_ID>
      <SUBMITTER_ID namespace="INRA-CMSE">ena-STUDY-INRA-CMSE-27-06-2013-16:41:16:629-101</SUBMITTER_ID>
    </IDENTIFIERS>
    <DESCRIPTOR>
      <STUDY_TITLE>High-throughput sequencing of amplicons for monitoring yeast biodiversity in must and during alcoholic fermentation.</STUDY_TITLE>
      <STUDY_TYPE existing_study_type="Metagenomics"/>
      <STUDY_ABSTRACT>We compared pyrosequencing technology with the Pcr-ItS-rFlP analysis of yeast isolates and denaturing gradient gel zlectrophoresis (DGGE). These methods gave divergent findings for the yeast population. DGGE was unsuitable for the quantification of biodiversity and its use for species detection was limited by the initial abundance of each species. the isolates identified by Pcr-ItSrFlP were not fully representative of the true population. For population dynamics, high-throughput sequencing technology yielded results differing in some respects from those obtained with other approaches. this study demonstrates that 454 pyrosequencing of amplicons is more relevant than other methods for studying the yeast community on grapes and during alcoholic fermentation. Indeed, this high-throughput sequencing method detected larger numbers of species on grapes and identified species present during alcoholic fermentation that were undetectable with the other techniques.</STUDY_ABSTRACT>
      <CENTER_PROJECT_NAME>IUVV_Yeast_Study</CENTER_PROJECT_NAME>
      <STUDY_DESCRIPTION>We compared pyrosequencing technology with the Pcr-ItS-rFlP analysis of yeast isolates and denaturing gradient gel zlectrophoresis (DGGE). These methods gave divergent findings for the yeast population. DGGE was unsuitable for the quantification of biodiversity and its use for species detection was limited by the initial abundance of each species. the isolates identified by Pcr-ItSrFlP were not fully representative of the true population. For population dynamics, high-throughput sequencing technology yielded results differing in some respects from those obtained with other approaches. this study demonstrates that 454 pyrosequencing of amplicons is more relevant than other methods for studying the yeast community on grapes and during alcoholic fermentation. Indeed, this high-throughput sequencing method detected larger numbers of species on grapes and identified species present during alcoholic fermentation that were undetectable with the other techniques.</STUDY_DESCRIPTION>
    </DESCRIPTOR>
    <STUDY_LINKS>
      <STUDY_LINK>
        <XREF_LINK>
          <DB>pubmed</DB>
          <ID>24659178</ID>
        </XREF_LINK>
      </STUDY_LINK>
    </STUDY_LINKS>
  </STUDY>
</STUDY_SET>
