<?xml version="1.0" encoding="UTF-8"?>
<STUDY_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <STUDY accession="ERP149577" alias="b5bf3afa-06f2-46cb-ac82-68e15ae8a7d8" center_name="Radboud University Nijmegen">
    <IDENTIFIERS>
      <PRIMARY_ID>ERP149577</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJEB64416</EXTERNAL_ID>
      <SUBMITTER_ID namespace="Radboud University Nijmegen">b5bf3afa-06f2-46cb-ac82-68e15ae8a7d8</SUBMITTER_ID>
    </IDENTIFIERS>
    <DESCRIPTOR>
      <STUDY_TITLE>The novel gammaproteobacterial methanotroph “Ca. Methylocalor cossyra” CH1 actively coexists with verrucomicrobial methanotrophs in acidic and hot geothermal soil</STUDY_TITLE>
      <STUDY_TYPE existing_study_type="Other"/>
      <STUDY_ABSTRACT>Terrestrial geothermal ecosystems are habitats typically characterized by large emissions of environmentally relevant gases. These emissions include CO2, CH4, H2S and H2, providing a niche for chemolithoautotrophic microorganisms.  Here, we report on the isolation and characterization of a novel thermophilic and acid-tolerant gammaproteobacterial methanotroph of the family Methylococcaceae, isolated from the Favara Grande. The isolate represents a novel species and genus growing at pH values ranging from 3.5 to 7.0 (pHopt = 6.0) and a temperature range of 35 to 55 °C (Topt = 50 °C). This diazotrophic methanotroph possesses genes encoding the particulate and soluble methane monooxygenases pMMO and sMMO, together with genes encoding the lanthanide-dependent and calcium-dependent methanol dehydrogenases XoxF and MxaF. The genome of the strain CH1 encodes the enzymes of the complete Calvin cycle and of a group 3d [NiFe] hydrogenase, coupling H2 oxidation to the production of NAD(P)H or reverse. However, strain CH1 did not show autotrophic/mixotrophic growth on H2 and CO2. In addition, it possesses three different types of sulfide:quinone oxidoreductases (SQRs, type I, II and III), indicating the possibility of H2S oxidation. For this novel species we propose the name “Candidatus Methylocalor cossyra” CH1.</STUDY_ABSTRACT>
      <CENTER_PROJECT_NAME>The novel gammaproteobacterial methanotroph “Ca. Methylocalor cossyra” CH1</CENTER_PROJECT_NAME>
      <STUDY_DESCRIPTION>Terrestrial geothermal ecosystems are habitats typically characterized by large emissions of environmentally relevant gases. These emissions include CO2, CH4, H2S and H2, providing a niche for chemolithoautotrophic microorganisms.  Here, we report on the isolation and characterization of a novel thermophilic and acid-tolerant gammaproteobacterial methanotroph of the family Methylococcaceae, isolated from the Favara Grande. The isolate represents a novel species and genus growing at pH values ranging from 3.5 to 7.0 (pHopt = 6.0) and a temperature range of 35 to 55 °C (Topt = 50 °C). This diazotrophic methanotroph possesses genes encoding the particulate and soluble methane monooxygenases pMMO and sMMO, together with genes encoding the lanthanide-dependent and calcium-dependent methanol dehydrogenases XoxF and MxaF. The genome of the strain CH1 encodes the enzymes of the complete Calvin cycle and of a group 3d [NiFe] hydrogenase, coupling H2 oxidation to the production of NAD(P)H or reverse. However, strain CH1 did not show autotrophic/mixotrophic growth on H2 and CO2. In addition, it possesses three different types of sulfide:quinone oxidoreductases (SQRs, type I, II and III), indicating the possibility of H2S oxidation. For this novel species we propose the name “Candidatus Methylocalor cossyra” CH1.</STUDY_DESCRIPTION>
    </DESCRIPTOR>
    <STUDY_ATTRIBUTES>
      <STUDY_ATTRIBUTE>
        <TAG>ENA-FIRST-PUBLIC</TAG>
        <VALUE>2023-07-17</VALUE>
      </STUDY_ATTRIBUTE>
      <STUDY_ATTRIBUTE>
        <TAG>ENA-LAST-UPDATE</TAG>
        <VALUE>2023-07-17</VALUE>
      </STUDY_ATTRIBUTE>
    </STUDY_ATTRIBUTES>
  </STUDY>
</STUDY_SET>
