<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT accession="ERX4155334" alias="f6h1__avFe__Live__Exp2_Rep3__Lib" center_name="MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH">
    <IDENTIFIERS>
      <PRIMARY_ID>ERX4155334</PRIMARY_ID>
      <SUBMITTER_ID namespace="MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH">f6h1__avFe__Live__Exp2_Rep3__Lib</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Illumina HiSeq 2500 paired end sequencing; RNA-Seq of A.thaliana (f6h1 mutant) grown in gnotobiological system with available Iron (avFe)</TITLE>
    <STUDY_REF accession="ERP122105">
      <IDENTIFIERS>
        <PRIMARY_ID>ERP122105</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJEB38663</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Root RNA-Seq of Arabidopsis thaliana grown in gnotobiotic system and different iron availability regimes</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="ERS4599737">
        <IDENTIFIERS>
          <PRIMARY_ID>ERS4599737</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMEA6872172</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>f6h1__avFe__Live__Exp2_Rep3__Lib</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="500"/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Roots were homogenized with Lysing Matrix E and TissueLyser II (30 beats per second for 2x30 s; Qiagen) and RNA was extracted with the miRNeasy Mini Kit (Qiagen) according to the manufacturer's instructions. RNA quality was determined using a 2100 Bioanalyzer (Agilent Technologies).</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>inoculum</TAG>
        <VALUE>Live SynCom</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>experiment</TAG>
        <VALUE>2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>replicate</TAG>
        <VALUE>3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
</EXPERIMENT_SET>
