ERP123100 PRJEB39567 Determining_the_role_of_bacterial_and_fungal_pathogens_for_the_mortality_of_Covid_19_patients__A_cohort_study_in_Northern_Italy-sc-6242 Determining_the_role_of_bacterial_and_fungal_pathogens_for_the_mortality_of_Covid_19_patients__A_cohort_study_in_Northern_Italy Since the early phase of the Covid-19 pandemic, it has been widely observed that mortality is highest among the elderly and immunocompromised patients, however, the possible role of co-infections with bacterial and fungal pathogens remains unclear. We will use targeted culturing -based whole genome sequencing to identify the bacterial and fungal pathogen organisms present in Covid-19 patient samples, to estimate their causal role for patient mortality and to help to find guidelines for assessing the risk of co-infections for patient populations. Since the early phase of the Covid-19 pandemic, it has been widely observed that mortality is highest among the elderly and immunocompromised patients, however, the possible role of co-infections with bacterial and fungal pathogens remains unclear. We will use targeted culturing -based whole genome sequencing to identify the bacterial and fungal pathogen organisms present in Covid-19 patient samples, to estimate their causal role for patient mortality and to help to find guidelines for assessing the risk of co-infections for patient populations. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/ ENA-FIRST-PUBLIC 2021-10-13 ENA-LAST-UPDATE 2021-10-13