<?xml version="1.0" encoding="UTF-8"?>
<SAMPLE_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <SAMPLE alias="SAMEA7430637" accession="ERS5188850">
    <IDENTIFIERS>
      <PRIMARY_ID>ERS5188850</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioSample">SAMEA7430637</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>TEDDY OU Gut MAG</TITLE>
    <SAMPLE_NAME>
      <TAXON_ID>592978</TAXON_ID>
      <SCIENTIFIC_NAME>Mediterraneibacter faecis</SCIENTIFIC_NAME>
    </SAMPLE_NAME>
    <DESCRIPTION>This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1272095275: SRR7568315,SRR7567069,SRR7559488,SRR7565840,SRR7561902,SRR7568114,SRR7564958,SRR7567508,SRR7556875,SRR7566052,SRR7557034,SRR7562108,SRR7569183,SRR7567216,SRR7557916,SRR7559645,SRR7561262,SRR7561398,SRR7561079,SRR7556812,SRR7556803,SRR7561298,SRR7562005,SRR7560110,SRR7563741,SRR7564353,SRR7558552,SRR7565947</DESCRIPTION>
    <SAMPLE_ATTRIBUTES>
      <SAMPLE_ATTRIBUTE>
        <TAG>ENA-FIRST-PUBLIC</TAG>
        <VALUE>2021-01-30T04:10:00Z</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>ENA-LAST-UPDATE</TAG>
        <VALUE>2020-10-15T06:18:51Z</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>External Id</TAG>
        <VALUE>SAMEA7430637</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>INSDC center name</TAG>
        <VALUE>Pan Lab at OU</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>INSDC first public</TAG>
        <VALUE>2021-01-30T04:10:00Z</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>INSDC last update</TAG>
        <VALUE>2020-10-15T06:18:51Z</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>INSDC status</TAG>
        <VALUE>public</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>MAG coverage software</TAG>
        <VALUE>bowtie2; v2.3.5.1</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>Submitter Id</TAG>
        <VALUE>TEDDY_OU_SUBJ1272095275_MAG121</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>assembly quality</TAG>
        <VALUE>Many fragments with little to no review of assembly other than reporting of standard assembly statistics</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>assembly software</TAG>
        <VALUE>SPAdes;3.13.1;default parameters with metaSPAdes mode</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>binning parameters</TAG>
        <VALUE>--minContig 2000</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>binning software</TAG>
        <VALUE>MetaBAT;2.12.1</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>collection date</TAG>
        <VALUE>not provided</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>completeness score</TAG>
        <VALUE>95.71</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>completeness software</TAG>
        <VALUE>CheckM;v1.0.13</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>contamination score</TAG>
        <VALUE>0.00</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>environment (biome)</TAG>
        <VALUE>human gut</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>environment (feature)</TAG>
        <VALUE>human gut</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>environment (material)</TAG>
        <VALUE>fecal</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>geographic location (country and/or sea)</TAG>
        <VALUE>restricted access</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>geographic location (latitude)</TAG>
        <VALUE>restricted access</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>geographic location (longitude)</TAG>
        <VALUE>restricted access</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>host sex</TAG>
        <VALUE>male</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>investigation type</TAG>
        <VALUE>metagenome-assembled genome</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>isolation source</TAG>
        <VALUE>human gut</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>metagenomic source</TAG>
        <VALUE>human gut metagenome</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>project name</TAG>
        <VALUE>PRJEB40730</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sample derived from</TAG>
        <VALUE>SAMN09408418,SAMN09409346,SAMN09409597,SAMN09409805,SAMN09410168,SAMN09411019,SAMN09411740,SAMN09411809,SAMN09411827,SAMN09411872,SAMN09411910,SAMN09412762,SAMN09413077,SAMN09415052,SAMN09415357,SAMN09415639,SAMN09415758,SAMN09416607,SAMN09416988,SAMN09417215,SAMN09418258,SAMN09418323,SAMN09419113,SAMN09420263,SAMN09420296,SAMN09420297,SAMN09420441,SAMN09420545</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sample name</TAG>
        <VALUE>TEDDY_OU_SUBJ1272095275_MAG121</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>scientific_name</TAG>
        <VALUE>[Ruminococcus] faecis</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sequencing method</TAG>
        <VALUE>Illumina HiSeq 2000</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>taxonomic classification</TAG>
        <VALUE>GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>taxonomic identity marker</TAG>
        <VALUE>multi-marker approach</VALUE>
      </SAMPLE_ATTRIBUTE>
    </SAMPLE_ATTRIBUTES>
  </SAMPLE>
</SAMPLE_SET>
