<?xml version="1.0" encoding="UTF-8"?>
<SAMPLE_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <SAMPLE alias="SAMEA7432120" accession="ERS5190340">
    <IDENTIFIERS>
      <PRIMARY_ID>ERS5190340</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioSample">SAMEA7432120</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>TEDDY OU Gut MAG</TITLE>
    <SAMPLE_NAME>
      <TAXON_ID>165186</TAXON_ID>
      <SCIENTIFIC_NAME>uncultured Ruminococcus sp.</SCIENTIFIC_NAME>
    </SAMPLE_NAME>
    <DESCRIPTION>This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1321430166: SRR7567722,SRR7557642,SRR7562359,SRR7566703,SRR7561321,SRR7566733,SRR7569509,SRR7568243,SRR7568187,SRR7562377,SRR7568900,SRR7565055,SRR7567396,SRR7563546,SRR7564167,SRR7569415,SRR7557284,SRR7569124,SRR7558399,SRR7564725,SRR7561773,SRR7568783,SRR7561087,SRR7561289,SRR7559204,SRR7559028,SRR7566883,SRR7559166,SRR7567114,SRR7561493,SRR7561870,SRR7564177,SRR7568277,SRR7562809,SRR7562446,SRR7568669,SRR7566074,SRR7557897,SRR7562784</DESCRIPTION>
    <SAMPLE_ATTRIBUTES>
      <SAMPLE_ATTRIBUTE>
        <TAG>ENA-FIRST-PUBLIC</TAG>
        <VALUE>2021-01-30T04:10:06Z</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>ENA-LAST-UPDATE</TAG>
        <VALUE>2020-10-15T06:37:05Z</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>External Id</TAG>
        <VALUE>SAMEA7432120</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>INSDC center name</TAG>
        <VALUE>Pan Lab at OU</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>INSDC first public</TAG>
        <VALUE>2021-01-30T04:10:06Z</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>INSDC last update</TAG>
        <VALUE>2020-10-15T06:37:05Z</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>INSDC status</TAG>
        <VALUE>public</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>MAG coverage software</TAG>
        <VALUE>bowtie2; v2.3.5.1</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>Submitter Id</TAG>
        <VALUE>TEDDY_OU_SUBJ1321430166_MAG68</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>assembly quality</TAG>
        <VALUE>Many fragments with little to no review of assembly other than reporting of standard assembly statistics</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>assembly software</TAG>
        <VALUE>SPAdes;3.13.1;default parameters with metaSPAdes mode</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>binning parameters</TAG>
        <VALUE>--minContig 2000</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>binning software</TAG>
        <VALUE>MetaBAT;2.12.1</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>collection date</TAG>
        <VALUE>not provided</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>completeness score</TAG>
        <VALUE>95.03</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>completeness software</TAG>
        <VALUE>CheckM;v1.0.13</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>contamination score</TAG>
        <VALUE>0.22</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>environment (biome)</TAG>
        <VALUE>human gut</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>environment (feature)</TAG>
        <VALUE>human gut</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>environment (material)</TAG>
        <VALUE>fecal</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>geographic location (country and/or sea)</TAG>
        <VALUE>restricted access</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>geographic location (latitude)</TAG>
        <VALUE>restricted access</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>geographic location (longitude)</TAG>
        <VALUE>restricted access</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>host sex</TAG>
        <VALUE>female</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>investigation type</TAG>
        <VALUE>metagenome-assembled genome</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>isolation source</TAG>
        <VALUE>human gut</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>metagenomic source</TAG>
        <VALUE>human gut metagenome</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>project name</TAG>
        <VALUE>PRJEB40730</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sample derived from</TAG>
        <VALUE>SAMN09408118,SAMN09408584,SAMN09409169,SAMN09409835,SAMN09409864,SAMN09410049,SAMN09410089,SAMN09410310,SAMN09410576,SAMN09410818,SAMN09411185,SAMN09411687,SAMN09412263,SAMN09412275,SAMN09413500,SAMN09413651,SAMN09413771,SAMN09414555,SAMN09414889,SAMN09415537,SAMN09415617,SAMN09416221,SAMN09416513,SAMN09416831,SAMN09416996,SAMN09417628,SAMN09417853,SAMN09418269,SAMN09418354,SAMN09418390,SAMN09418559,SAMN09418737,SAMN09418763,SAMN09419163,SAMN09419735,SAMN09420501,SAMN09420839,SAMN09420853,SAMN09421113</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sample name</TAG>
        <VALUE>TEDDY_OU_SUBJ1321430166_MAG68</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>scientific_name</TAG>
        <VALUE>uncultured Ruminococcus sp.</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sequencing method</TAG>
        <VALUE>Illumina HiSeq 2000</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>taxonomic classification</TAG>
        <VALUE>GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>taxonomic identity marker</TAG>
        <VALUE>multi-marker approach</VALUE>
      </SAMPLE_ATTRIBUTE>
    </SAMPLE_ATTRIBUTES>
  </SAMPLE>
</SAMPLE_SET>
