<?xml version="1.0" encoding="UTF-8"?>
<SAMPLE_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <SAMPLE alias="SAMEA7433991" accession="ERS5192208">
    <IDENTIFIERS>
      <PRIMARY_ID>ERS5192208</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioSample">SAMEA7433991</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>TEDDY OU Gut MAG</TITLE>
    <SAMPLE_NAME>
      <TAXON_ID>216816</TAXON_ID>
      <SCIENTIFIC_NAME>Bifidobacterium longum</SCIENTIFIC_NAME>
    </SAMPLE_NAME>
    <DESCRIPTION>This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1391457984: SRR7562546,SRR7565098,SRR7569311,SRR7564141,SRR7564014,SRR7568866,SRR7557892,SRR7556793,SRR7561209,SRR7562747,SRR7557231,SRR7560233,SRR7557378,SRR7562831,SRR7567324,SRR7565317,SRR7562461,SRR7563900,SRR7565143,SRR7557278,SRR7558327,SRR7566273,SRR7568585,SRR7565270,SRR7561696,SRR7566728,SRR7564186,SRR7564290,SRR7561851,SRR7563132,SRR7564866,SRR7559425,SRR7560717,SRR7567379,SRR7569236,SRR7568799,SRR7557257,SRR7560735,SRR7563473,SRR7559202,SRR7559203</DESCRIPTION>
    <SAMPLE_ATTRIBUTES>
      <SAMPLE_ATTRIBUTE>
        <TAG>ENA-FIRST-PUBLIC</TAG>
        <VALUE>2021-01-30T04:10:00Z</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>ENA-LAST-UPDATE</TAG>
        <VALUE>2020-10-15T07:06:48Z</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>External Id</TAG>
        <VALUE>SAMEA7433991</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>INSDC center name</TAG>
        <VALUE>Pan Lab at OU</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>INSDC first public</TAG>
        <VALUE>2021-01-30T04:10:00Z</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>INSDC last update</TAG>
        <VALUE>2020-10-15T07:06:48Z</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>INSDC status</TAG>
        <VALUE>public</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>MAG coverage software</TAG>
        <VALUE>bowtie2; v2.3.5.1</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>Submitter Id</TAG>
        <VALUE>TEDDY_OU_SUBJ1391457984_MAG49</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>assembly quality</TAG>
        <VALUE>Many fragments with little to no review of assembly other than reporting of standard assembly statistics</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>assembly software</TAG>
        <VALUE>SPAdes;3.13.1;default parameters with metaSPAdes mode</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>binning parameters</TAG>
        <VALUE>--minContig 2000</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>binning software</TAG>
        <VALUE>MetaBAT;2.12.1</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>collection date</TAG>
        <VALUE>not provided</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>completeness score</TAG>
        <VALUE>93.05</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>completeness software</TAG>
        <VALUE>CheckM;v1.0.13</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>contamination score</TAG>
        <VALUE>0.73</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>environment (biome)</TAG>
        <VALUE>human gut</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>environment (feature)</TAG>
        <VALUE>human gut</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>environment (material)</TAG>
        <VALUE>fecal</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>geographic location (country and/or sea)</TAG>
        <VALUE>restricted access</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>geographic location (latitude)</TAG>
        <VALUE>restricted access</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>geographic location (longitude)</TAG>
        <VALUE>restricted access</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>host sex</TAG>
        <VALUE>male</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>investigation type</TAG>
        <VALUE>metagenome-assembled genome</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>isolation source</TAG>
        <VALUE>human gut</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>metagenomic source</TAG>
        <VALUE>human gut metagenome</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>project name</TAG>
        <VALUE>PRJEB40730</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sample derived from</TAG>
        <VALUE>SAMN09408083,SAMN09408795,SAMN09408956,SAMN09408964,SAMN09409063,SAMN09409601,SAMN09409617,SAMN09409735,SAMN09410666,SAMN09410795,SAMN09410802,SAMN09410979,SAMN09411331,SAMN09411335,SAMN09411448,SAMN09411917,SAMN09412709,SAMN09412742,SAMN09413379,SAMN09413908,SAMN09414039,SAMN09414148,SAMN09414250,SAMN09414585,SAMN09414866,SAMN09415167,SAMN09415533,SAMN09415678,SAMN09416660,SAMN09416679,SAMN09416928,SAMN09418338,SAMN09418421,SAMN09418451,SAMN09419339,SAMN09419487,SAMN09419492,SAMN09419548,SAMN09420616,SAMN09421205,SAMN09421205</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sample name</TAG>
        <VALUE>TEDDY_OU_SUBJ1391457984_MAG49</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>scientific_name</TAG>
        <VALUE>Bifidobacterium longum</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sequencing method</TAG>
        <VALUE>Illumina HiSeq 2000</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>taxonomic classification</TAG>
        <VALUE>GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>taxonomic identity marker</TAG>
        <VALUE>multi-marker approach</VALUE>
      </SAMPLE_ATTRIBUTE>
    </SAMPLE_ATTRIBUTES>
  </SAMPLE>
</SAMPLE_SET>
