<?xml version="1.0" encoding="UTF-8"?>
<SAMPLE_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <SAMPLE alias="SAMEA7437983" accession="ERS5196195">
    <IDENTIFIERS>
      <PRIMARY_ID>ERS5196195</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioSample">SAMEA7437983</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>TEDDY OU Gut MAG</TITLE>
    <SAMPLE_NAME>
      <TAXON_ID>33038</TAXON_ID>
      <SCIENTIFIC_NAME>Mediterraneibacter gnavus</SCIENTIFIC_NAME>
    </SAMPLE_NAME>
    <DESCRIPTION>This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1521080709: SRR7557085,SRR7557086,SRR7563151,SRR7563152,SRR7557170,SRR7557168,SRR7557169,SRR7569626,SRR7567735,SRR7565229,SRR7565228,SRR7568384,SRR7568383,SRR7565589,SRR7565590,SRR7569607,SRR7569608,SRR7560163,SRR7560162,SRR7563903,SRR7563902,SRR7569470,SRR7569471,SRR7568962,SRR7568963,SRR7566979,SRR7566980,SRR7561868,SRR7561869,SRR7568926,SRR7568925,SRR7567091,SRR7561141,SRR7567929,SRR7567928</DESCRIPTION>
    <SAMPLE_ATTRIBUTES>
      <SAMPLE_ATTRIBUTE>
        <TAG>ENA-FIRST-PUBLIC</TAG>
        <VALUE>2021-01-30T04:10:03Z</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>ENA-LAST-UPDATE</TAG>
        <VALUE>2020-10-15T08:09:59Z</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>External Id</TAG>
        <VALUE>SAMEA7437983</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>INSDC center name</TAG>
        <VALUE>Pan Lab at OU</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>INSDC first public</TAG>
        <VALUE>2021-01-30T04:10:03Z</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>INSDC last update</TAG>
        <VALUE>2020-10-15T08:09:59Z</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>INSDC status</TAG>
        <VALUE>public</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>MAG coverage software</TAG>
        <VALUE>bowtie2; v2.3.5.1</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>Submitter Id</TAG>
        <VALUE>TEDDY_OU_SUBJ1521080709_MAG81</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>assembly quality</TAG>
        <VALUE>Many fragments with little to no review of assembly other than reporting of standard assembly statistics</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>assembly software</TAG>
        <VALUE>SPAdes;3.13.1;default parameters with metaSPAdes mode</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>binning parameters</TAG>
        <VALUE>--minContig 2000</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>binning software</TAG>
        <VALUE>MetaBAT;2.12.1</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>collection date</TAG>
        <VALUE>not provided</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>completeness score</TAG>
        <VALUE>96.35</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>completeness software</TAG>
        <VALUE>CheckM;v1.0.13</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>contamination score</TAG>
        <VALUE>0.00</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>environment (biome)</TAG>
        <VALUE>human gut</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>environment (feature)</TAG>
        <VALUE>human gut</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>environment (material)</TAG>
        <VALUE>fecal</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>geographic location (country and/or sea)</TAG>
        <VALUE>restricted access</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>geographic location (latitude)</TAG>
        <VALUE>restricted access</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>geographic location (longitude)</TAG>
        <VALUE>restricted access</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>host sex</TAG>
        <VALUE>female</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>investigation type</TAG>
        <VALUE>metagenome-assembled genome</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>isolation source</TAG>
        <VALUE>human gut</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>metagenomic source</TAG>
        <VALUE>human gut metagenome</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>project name</TAG>
        <VALUE>PRJEB40730</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sample derived from</TAG>
        <VALUE>SAMN09408201,SAMN09408201,SAMN09409697,SAMN09409697,SAMN09410438,SAMN09410438,SAMN09410438,SAMN09412391,SAMN09413165,SAMN09413197,SAMN09413197,SAMN09415012,SAMN09415012,SAMN09415366,SAMN09415366,SAMN09415657,SAMN09415657,SAMN09416298,SAMN09416298,SAMN09417062,SAMN09417062,SAMN09418019,SAMN09418019,SAMN09418288,SAMN09418288,SAMN09418348,SAMN09418348,SAMN09418535,SAMN09418535,SAMN09418700,SAMN09418700,SAMN09419226,SAMN09419511,SAMN09419531,SAMN09419531</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sample name</TAG>
        <VALUE>TEDDY_OU_SUBJ1521080709_MAG81</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>scientific_name</TAG>
        <VALUE>[Ruminococcus] gnavus</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sequencing method</TAG>
        <VALUE>Illumina HiSeq 2000</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>taxonomic classification</TAG>
        <VALUE>GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>taxonomic identity marker</TAG>
        <VALUE>multi-marker approach</VALUE>
      </SAMPLE_ATTRIBUTE>
    </SAMPLE_ATTRIBUTES>
  </SAMPLE>
</SAMPLE_SET>
