<STUDY_REF accession="ERP005437" refname="ena-STUDY-CGS-GL-26-03-2014-22:46:00:638-589" refcenter="CGS-GL"> <IDENTIFIERS> <PRIMARY_ID>ERP005437</PRIMARY_ID> <SUBMITTER_ID namespace="CGS-GL">ena-STUDY-CGS-GL-26-03-2014-22:46:00:638-589</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Library constructed from pooled and barcoded V2 16S rRNA amplicons from fecal microbiota. 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See our paper for additional details.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR refname="454Reads.B_57HE_N_MAL_15_D16_IGAPOS" refcenter="CGS-GL" accession="ERS437582"> <IDENTIFIERS> <PRIMARY_ID>ERS437582</PRIMARY_ID> <SUBMITTER_ID namespace="CGS-GL">454Reads.B_57HE_N_MAL_15_D16_IGAPOS</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>G9AQXK3</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <SINGLE/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Pooled and barcoded V2 16S rRNA amplicons from fecal microbiota.</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_LABEL>A1</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>Adapter</READ_TYPE> <EXPECTED_BASECALL_TABLE base_coord="1" default_length="30"> <BASECALL min_match="30" max_mismatch="0" match_edge="full" read_group_tag="">CCATCTCATCCCTGCGTGTCTCCGACTCAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>B2</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE base_coord="31" default_length="8"> <BASECALL min_match="8" max_mismatch="0" match_edge="full" read_group_tag="">TGCACATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_LABEL>P3</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>Primer</READ_TYPE> <EXPECTED_BASECALL_TABLE base_coord="39" default_length="19"> <BASECALL min_match="19" max_mismatch="0" match_edge="full" read_group_tag="">TGCTGCCTCCCGTAGGAGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>3</READ_INDEX> <READ_LABEL>F4</READ_LABEL> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>58</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <LS454> <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL> </LS454> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="ena-EXPERIMENT-CGS-GL-18-04-2014-19:06:36:090-34" center_name="CGS-GL" accession="ERX447158"> <IDENTIFIERS> <PRIMARY_ID>ERX447158</PRIMARY_ID> <SUBMITTER_ID namespace="CGS-GL">ena-EXPERIMENT-CGS-GL-18-04-2014-19:06:36:090-34</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP005437" refname="ena-STUDY-CGS-GL-26-03-2014-22:46:00:638-589" refcenter="CGS-GL"> <IDENTIFIERS> <PRIMARY_ID>ERP005437</PRIMARY_ID> <SUBMITTER_ID namespace="CGS-GL">ena-STUDY-CGS-GL-26-03-2014-22:46:00:638-589</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Library constructed from pooled and barcoded V2 16S rRNA amplicons from fecal microbiota. 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ERX447156 ena-EXPERIMENT-CGS-GL-18-04-2014-19:06:36:089-32 <STUDY_REF accession="ERP005437" refname="ena-STUDY-CGS-GL-26-03-2014-22:46:00:638-589" refcenter="CGS-GL"> <IDENTIFIERS> <PRIMARY_ID>ERP005437</PRIMARY_ID> <SUBMITTER_ID namespace="CGS-GL">ena-STUDY-CGS-GL-26-03-2014-22:46:00:638-589</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Library constructed from pooled and barcoded V2 16S rRNA amplicons from fecal microbiota. 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See our paper for additional details.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR refname="454Reads.B_57HE_N_MAL_15_D16_IGAPOS" refcenter="CGS-GL" accession="ERS437582"> <IDENTIFIERS> <PRIMARY_ID>ERS437582</PRIMARY_ID> <SUBMITTER_ID namespace="CGS-GL">454Reads.B_57HE_N_MAL_15_D16_IGAPOS</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>G9AQXK3</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <SINGLE/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Pooled and barcoded V2 16S rRNA amplicons from fecal microbiota.</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_LABEL>A1</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>Adapter</READ_TYPE> <EXPECTED_BASECALL_TABLE base_coord="1" default_length="30"> <BASECALL min_match="30" max_mismatch="0" match_edge="full" read_group_tag="">CCATCTCATCCCTGCGTGTCTCCGACTCAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>B2</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE base_coord="31" default_length="8"> <BASECALL min_match="8" max_mismatch="0" match_edge="full" read_group_tag="">TGCACATG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_LABEL>P3</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>Primer</READ_TYPE> <EXPECTED_BASECALL_TABLE base_coord="39" default_length="19"> <BASECALL min_match="19" max_mismatch="0" match_edge="full" read_group_tag="">TGCTGCCTCCCGTAGGAGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>3</READ_INDEX> <READ_LABEL>F4</READ_LABEL> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>58</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <LS454> <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL> </LS454> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="ena-EXPERIMENT-CGS-GL-18-04-2014-19:06:36:090-34" center_name="CGS-GL" accession="ERX447158"> <IDENTIFIERS> <PRIMARY_ID>ERX447158</PRIMARY_ID> <SUBMITTER_ID namespace="CGS-GL">ena-EXPERIMENT-CGS-GL-18-04-2014-19:06:36:090-34</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP005437" refname="ena-STUDY-CGS-GL-26-03-2014-22:46:00:638-589" refcenter="CGS-GL"> <IDENTIFIERS> <PRIMARY_ID>ERP005437</PRIMARY_ID> <SUBMITTER_ID namespace="CGS-GL">ena-STUDY-CGS-GL-26-03-2014-22:46:00:638-589</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Library constructed from pooled and barcoded V2 16S rRNA amplicons from fecal microbiota. See our paper for additional details.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR refname="454Reads.B_57HE_N_MAL_2_D16_ALL" refcenter="CGS-GL" accession="ERS437583"> <IDENTIFIERS> <PRIMARY_ID>ERS437583</PRIMARY_ID> <SUBMITTER_ID namespace="CGS-GL">454Reads.B_57HE_N_MAL_2_D16_ALL</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>G9AQXK3</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <SINGLE/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Pooled and barcoded V2 16S rRNA amplicons from fecal microbiota.</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_LABEL>A1</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>Adapter</READ_TYPE> <EXPECTED_BASECALL_TABLE base_coord="1" default_length="30"> <BASECALL min_match="30" max_mismatch="0" match_edge="full" read_group_tag="">CCATCTCATCCCTGCGTGTCTCCGACTCAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>B2</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE base_coord="31" default_length="8"> <BASECALL min_match="8" max_mismatch="0" match_edge="full" read_group_tag="">TGACAGTC</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_LABEL>P3</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>Primer</READ_TYPE> <EXPECTED_BASECALL_TABLE base_coord="39" default_length="19"> <BASECALL min_match="19" max_mismatch="0" match_edge="full" read_group_tag="">TGCTGCCTCCCGTAGGAGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>3</READ_INDEX> <READ_LABEL>F4</READ_LABEL> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>58</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <LS454> <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL> </LS454> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="ena-EXPERIMENT-CGS-GL-18-04-2014-19:06:36:090-35" center_name="CGS-GL" accession="ERX447159"> <IDENTIFIERS> <PRIMARY_ID>ERX447159</PRIMARY_ID> <SUBMITTER_ID namespace="CGS-GL">ena-EXPERIMENT-CGS-GL-18-04-2014-19:06:36:090-35</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP005437" refname="ena-STUDY-CGS-GL-26-03-2014-22:46:00:638-589" refcenter="CGS-GL"> <IDENTIFIERS> <PRIMARY_ID>ERP005437</PRIMARY_ID> <SUBMITTER_ID namespace="CGS-GL">ena-STUDY-CGS-GL-26-03-2014-22:46:00:638-589</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Library constructed from pooled and barcoded V2 16S rRNA amplicons from fecal microbiota. See our paper for additional details.</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR refname="454Reads.B_57HE_N_MAL_2_D16_IGANEG" refcenter="CGS-GL" accession="ERS437584"> <IDENTIFIERS> <PRIMARY_ID>ERS437584</PRIMARY_ID> <SUBMITTER_ID namespace="CGS-GL">454Reads.B_57HE_N_MAL_2_D16_IGANEG</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>G9AQXK3</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <SINGLE/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>Pooled and barcoded V2 16S rRNA amplicons from fecal microbiota.</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_LABEL>A1</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>Adapter</READ_TYPE> <EXPECTED_BASECALL_TABLE base_coord="1" default_length="30"> <BASECALL min_match="30" max_mismatch="0" match_edge="full" read_group_tag="">CCATCTCATCCCTGCGTGTCTCCGACTCAG</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_LABEL>B2</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <EXPECTED_BASECALL_TABLE base_coord="31" default_length="8"> <BASECALL min_match="8" max_mismatch="0" match_edge="full" read_group_tag="">TCTGCTCA</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_LABEL>P3</READ_LABEL> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>Primer</READ_TYPE> <EXPECTED_BASECALL_TABLE base_coord="39" default_length="19"> <BASECALL min_match="19" max_mismatch="0" match_edge="full" read_group_tag="">TGCTGCCTCCCGTAGGAGT</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>3</READ_INDEX> <READ_LABEL>F4</READ_LABEL> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>58</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <LS454> <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL> </LS454> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT alias="ena-EXPERIMENT-CGS-GL-18-04-2014-19:06:36:090-36" center_name="CGS-GL" accession="ERX447160"> <IDENTIFIERS> <PRIMARY_ID>ERX447160</PRIMARY_ID> <SUBMITTER_ID namespace="CGS-GL">ena-EXPERIMENT-CGS-GL-18-04-2014-19:06:36:090-36</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="ERP005437" refname="ena-STUDY-CGS-GL-26-03-2014-22:46:00:638-589" refcenter="CGS-GL"> <IDENTIFIERS> <PRIMARY_ID>ERP005437</PRIMARY_ID> <SUBMITTER_ID namespace="CGS-GL">ena-STUDY-CGS-GL-26-03-2014-22:46:00:638-589</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Library constructed from pooled and barcoded V2 16S rRNA amplicons from fecal microbiota. 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