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<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
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      <PRIMARY_ID>ERX4831293</PRIMARY_ID>
      <SUBMITTER_ID namespace="Liver Cancer Program, Center for Cancer Research, National Cancer Institute, Bethesda, MD 20892, USA">E-MTAB-9974:DEN Heterozygous Tid1_s</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Illumina HiSeq 2000 sequencing; RNA-seq on total RNA isolated from livers of 6-month DEN-treated Tid1-/- against WT mice</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>ERP126088</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJEB42252</EXTERNAL_ID>
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      <DESIGN_DESCRIPTION>RNA-seq on total RNA isolated from livers of 6-month DEN-treated Tid1-/- against WT mice</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="ERS5494364">
        <IDENTIFIERS>
          <PRIMARY_ID>ERS5494364</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMEA7747017</EXTERNAL_ID>
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      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>DEN Heterozygous Tid1_s</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Total RNA from tissues was prepared using TRIZOL reagent (Invitrogen) according to the manufacturer's instructions. cDNA synthesis was performed with SuperScript III reverse transcriptase (Invitrogen) and random hexamers.  Total RNA from tissues was prepared using TRIZOL reagent (Invitrogen) according to the manufacturer's instructions. cDNA synthesis was performed with SuperScript III reverse transcriptase (Invitrogen) and random hexamers.  Total RNA from tissues was prepared using TRIZOL reagent (Invitrogen) according to the manufacturer's instructions. cDNA synthesis was performed with SuperScript III reverse transcriptase (Invitrogen) and random hexamers.</LIBRARY_CONSTRUCTION_PROTOCOL>
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    </DESIGN>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>Experimental Factor: genotype</TAG>
        <VALUE>Alb-Cre-Tid1f/+</VALUE>
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      <PRIMARY_ID>ERX4831294</PRIMARY_ID>
      <SUBMITTER_ID namespace="Liver Cancer Program, Center for Cancer Research, National Cancer Institute, Bethesda, MD 20892, USA">E-MTAB-9974:DEN Tid1 KO_s</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Illumina HiSeq 2000 sequencing; RNA-seq on total RNA isolated from livers of 6-month DEN-treated Tid1-/- against WT mice</TITLE>
    <STUDY_REF accession="ERP126088">
      <IDENTIFIERS>
        <PRIMARY_ID>ERP126088</PRIMARY_ID>
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    <DESIGN>
      <DESIGN_DESCRIPTION>RNA-seq on total RNA isolated from livers of 6-month DEN-treated Tid1-/- against WT mice</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>ERS5494365</PRIMARY_ID>
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      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>DEN Tid1 KO_s</LIBRARY_NAME>
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        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Total RNA from tissues was prepared using TRIZOL reagent (Invitrogen) according to the manufacturer's instructions. cDNA synthesis was performed with SuperScript III reverse transcriptase (Invitrogen) and random hexamers.  Total RNA from tissues was prepared using TRIZOL reagent (Invitrogen) according to the manufacturer's instructions. cDNA synthesis was performed with SuperScript III reverse transcriptase (Invitrogen) and random hexamers.  Total RNA from tissues was prepared using TRIZOL reagent (Invitrogen) according to the manufacturer's instructions. cDNA synthesis was performed with SuperScript III reverse transcriptase (Invitrogen) and random hexamers.</LIBRARY_CONSTRUCTION_PROTOCOL>
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    </DESIGN>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>Experimental Factor: genotype</TAG>
        <VALUE>Alb-Cre-Tid1f/f</VALUE>
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    </EXPERIMENT_ATTRIBUTES>
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    <IDENTIFIERS>
      <PRIMARY_ID>ERX4831295</PRIMARY_ID>
      <SUBMITTER_ID namespace="Liver Cancer Program, Center for Cancer Research, National Cancer Institute, Bethesda, MD 20892, USA">E-MTAB-9974:DEN WT_s</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Illumina HiSeq 2000 sequencing; RNA-seq on total RNA isolated from livers of 6-month DEN-treated Tid1-/- against WT mice</TITLE>
    <STUDY_REF accession="ERP126088">
      <IDENTIFIERS>
        <PRIMARY_ID>ERP126088</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJEB42252</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>RNA-seq on total RNA isolated from livers of 6-month DEN-treated Tid1-/- against WT mice</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="ERS5494366">
        <IDENTIFIERS>
          <PRIMARY_ID>ERS5494366</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMEA7747019</EXTERNAL_ID>
        </IDENTIFIERS>
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      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>DEN WT_s</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Total RNA from tissues was prepared using TRIZOL reagent (Invitrogen) according to the manufacturer's instructions. cDNA synthesis was performed with SuperScript III reverse transcriptase (Invitrogen) and random hexamers.  Total RNA from tissues was prepared using TRIZOL reagent (Invitrogen) according to the manufacturer's instructions. cDNA synthesis was performed with SuperScript III reverse transcriptase (Invitrogen) and random hexamers.  Total RNA from tissues was prepared using TRIZOL reagent (Invitrogen) according to the manufacturer's instructions. cDNA synthesis was performed with SuperScript III reverse transcriptase (Invitrogen) and random hexamers.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>Experimental Factor: genotype</TAG>
        <VALUE>Tid1f/f</VALUE>
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