<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="ena-EXPERIMENT-UT SOUTHWESTERN MEDICAL CENTER-13-08-2014-17:57:57:221-1" center_name="UT SOUTHWESTERN MEDICAL CENTER" accession="ERX537482">
    <IDENTIFIERS>
      <PRIMARY_ID>ERX537482</PRIMARY_ID>
      <SUBMITTER_ID namespace="UT SOUTHWESTERN MEDICAL CENTER">ena-EXPERIMENT-UT SOUTHWESTERN MEDICAL CENTER-13-08-2014-17:57:57:221-1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Illumina HiSeq 2500 paired end sequencing</TITLE>
    <STUDY_REF accession="ERP006614" refname="ena-STUDY-UT SOUTHWESTERN MEDICAL CENTER-07-08-2014-20:20:35:190-98" refcenter="UT SOUTHWESTERN MEDICAL CENTER">
      <IDENTIFIERS>
        <PRIMARY_ID>ERP006614</PRIMARY_ID>
        <SUBMITTER_ID namespace="UT SOUTHWESTERN MEDICAL CENTER">ena-STUDY-UT SOUTHWESTERN MEDICAL CENTER-07-08-2014-20:20:35:190-98</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="ERS524231" refname="MG2" refcenter="UT SOUTHWESTERN MEDICAL CENTER">
        <IDENTIFIERS>
          <PRIMARY_ID>ERS524231</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMEA2690951</EXTERNAL_ID>
          <SUBMITTER_ID namespace="UT SOUTHWESTERN MEDICAL CENTER">MG2</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>unspecified</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="300"/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>DNA was sheared with an S2 focused-ultrasonicator (Covaris, Woburn, MA, USA) to achieve a target fragment size of around 100-900 bp according to the manufacturer’s instructions. The KAPA High Throughput Library Preparation Kit with Standard PCR Library Amplification (KAPA Biosystems, Wilmington, MA, USA) was used to generate Illumina sequencing libraries according to the manufacturer’s instructions. All libraries were amplified with seven PCR cycles. Illumina libraries were subjected to a dual size selection using AMPure XP beads (Beckman Coulter, Brea, CA, USA) with a target size window of 300 to 1000 bp.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>F1</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>R2</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="0"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
