ERX5124900 BTAU_RI_GC001_1R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955892 SAMEA8132954 GC001_1R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-09-25 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 9.9 ERX5124901 BTAU_RI_GC002_2R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955894 SAMEA8132955 GC002_2R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-11 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 8.6 ERX5124902 BTAU_RI_GC003_3R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955895 SAMEA8132956 GC003_3R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-10 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.1 ERX5124903 BTAU_RI_GC004_4R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955896 SAMEA8132957 GC004_4R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-09-25 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.8 ERX5124904 BTAU_RI_GC005_5R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955897 SAMEA8132958 GC005_5R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-09 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.5 ERX5124905 BTAU_RI_GC006_6R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955898 SAMEA8132959 GC006_6R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-11 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 8.8 ERX5124906 BTAU_RI_GC007_7R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955904 SAMEA8132960 GC007_7R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-11 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 6.0 ERX5124907 BTAU_RI_GC008_8R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955905 SAMEA8132961 GC008_8R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-10-12 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 8.4 ERX5124908 BTAU_RI_GC009_9R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955907 SAMEA8132962 GC009_9R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-10 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.1 ERX5124909 BTAU_RI_GC010_10R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955908 SAMEA8132963 GC010_10R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-12-03 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 5.6 ERX5124910 BTAU_RI_GC011_11R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955909 SAMEA8132964 GC011_11R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-08-27 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 5.6 ERX5124911 BTAU_RI_GC012_12R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955911 SAMEA8132965 GC012_12R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-10 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 8.8 ERX5124912 BTAU_RI_GC013_13R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955912 SAMEA8132966 GC013_13R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-09-25 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 8.6 ERX5124913 BTAU_RI_GC014_16R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955913 SAMEA8132967 GC014_16R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-12-03 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.6 ERX5124914 BTAU_RI_GC015_18R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955914 SAMEA8132969 GC015_18R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-08-27 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.3 ERX5124915 BTAU_RI_GC016_19R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955919 SAMEA8132970 GC016_19R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-09 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 8.2 ERX5124916 BTAU_RI_GC017_20R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955849 SAMEA8132971 GC017_20R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-12-03 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 8.1 ERX5124917 BTAU_RI_GC018_21R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955851 SAMEA8132972 GC018_21R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-09 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 8.6 ERX5124918 BTAU_RI_GC019_22R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955853 SAMEA8132973 GC019_22R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-10 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 8.2 ERX5124919 BTAU_RI_GC020_23R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955855 SAMEA8132974 GC020_23R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-12-03 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 8.3 ERX5124920 BTAU_RI_GC021_25R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955857 SAMEA8132975 GC021_25R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-10 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 9.0 ERX5124921 BTAU_RI_GC022_26R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955858 SAMEA8132976 GC022_26R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-10-12 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 8.9 ERX5124922 BTAU_RI_GC023_27R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955859 SAMEA8132977 GC023_27R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-10-12 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 8.8 ERX5124923 BTAU_RI_GC024_28R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955860 SAMEA8132978 GC024_28R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-09-25 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.1 ERX5124924 BTAU_RI_GC025_29R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955861 SAMEA8132979 GC025_29R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-10-12 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.4 ERX5124925 BTAU_RI_GC026_30R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955867 SAMEA8132980 GC026_30R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-08-27 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 8.3 ERX5124926 BTAU_RI_GC027_31R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955868 SAMEA8132981 GC027_31R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-09-25 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 8.5 ERX5124927 BTAU_RI_GC028_32R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955870 SAMEA8132982 GC028_32R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-11 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 6.5 ERX5124928 BTAU_RI_GC029_33R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955871 SAMEA8132983 GC029_33R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-09 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 8.1 ERX5124929 BTAU_RI_GC030_34R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955872 SAMEA8132984 GC030_34R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-11 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 8.1 ERX5124930 BTAU_RI_GC031_35R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955874 SAMEA8132985 GC031_35R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-11 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.8 ERX5124931 BTAU_RI_GC032_36R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955875 SAMEA8132986 GC032_36R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-10 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 8.7 ERX5124932 BTAU_RI_GC033_37R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955876 SAMEA8132987 GC033_37R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-12-03 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.3 ERX5124933 BTAU_RI_GC034_38R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955877 SAMEA8132988 GC034_38R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-10-12 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 8.3 ERX5124934 BTAU_RI_GC035_39R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955878 SAMEA8132989 GC035_39R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-11 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 8.3 ERX5124935 BTAU_RI_GC036_40R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955882 SAMEA8132990 GC036_40R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-12-03 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.3 ERX5124936 BTAU_RI_GC037_41R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955883 SAMEA8132991 GC037_41R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-08-27 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 8.4 ERX5124937 BTAU_RI_GC038_42R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955885 SAMEA8132992 GC038_42R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-11 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.9 ERX5124938 BTAU_RI_GC039_43R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955825 SAMEA8132993 GC039_43R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-09-25 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 5.9 ERX5124939 BTAU_RI_GC040_44R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955827 SAMEA8132994 GC040_44R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-10-12 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.2 ERX5124940 BTAU_RI_GC041_45R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955829 SAMEA8132995 GC041_45R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-10-12 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.0 ERX5124941 BTAU_RI_GC042_47R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955830 SAMEA8132996 GC042_47R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-09-25 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 9.1 ERX5124942 BTAU_RI_GC043_48R ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955831 SAMEA8132997 GC043_48R OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-12-03 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.9 ERX5124943 BTAU_RI_GC044_CA_335_01 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955915 SAMEA8133020 GC044_CA_335_01 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-09 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 8.8 ERX5124944 BTAU_RI_GC045_CA_335_03 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955916 SAMEA8133022 GC045_CA_335_03 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-09-25 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 8.4 ERX5124945 BTAU_RI_GC046_CA_335_04 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955917 SAMEA8133023 GC046_CA_335_04 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-12-03 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number not collected ERX5124946 BTAU_RI_GC047_CA_335_05 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955918 SAMEA8133024 GC047_CA_335_05 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-11 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number not collected ERX5124947 BTAU_RI_GC048_CA_335_06 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955920 SAMEA8133025 GC048_CA_335_06 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-12-03 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number not collected ERX5124948 BTAU_RI_GC049_CA_335_11 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955856 SAMEA8133029 GC049_CA_335_11 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-11 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number not collected ERX5124949 BTAU_RI_GC050_CA_335_08 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955850 SAMEA8133026 GC050_CA_335_08 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-10 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number not collected ERX5124950 BTAU_RI_GC051_CA_335_09 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955852 SAMEA8133027 GC051_CA_335_09 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-08-27 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number not collected ERX5124951 BTAU_RI_GC052_CA_335_10 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955854 SAMEA8133028 GC052_CA_335_10 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-10 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number not collected ERX5124952 BTAU_RI_GC053_CA_335_12 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955862 SAMEA8133030 GC053_CA_335_12 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-10 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number not collected ERX5124953 BTAU_RI_GC054_CA_335_13 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955863 SAMEA8133031 GC054_CA_335_13 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-10-12 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.2 ERX5124954 BTAU_RI_GC055_CA_335_16 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955864 SAMEA8133032 GC055_CA_335_16 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-11 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 5.2 ERX5124955 BTAU_RI_GC056_CA_335_17 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955865 SAMEA8133033 GC056_CA_335_17 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-08-27 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number not collected ERX5124956 BTAU_RI_GC057_CA_335_18 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955866 SAMEA8133034 GC057_CA_335_18 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-08-27 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.0 ERX5124957 BTAU_RI_GC058_CA_335_20 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955869 SAMEA8133036 GC058_CA_335_20 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-10-12 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 5.9 ERX5124958 BTAU_RI_GC059_CA_154_01 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955832 SAMEA8132998 GC059_CA_154_01 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-10-12 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 2.9 ERX5124959 BTAU_RI_GC060_CA_154_09 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955888 SAMEA8133005 GC060_CA_154_09 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-12-03 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 6.7 ERX5124960 BTAU_RI_GC061_CA_154_12 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955891 SAMEA8133008 GC061_CA_154_12 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-10-12 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 8.0 ERX5124961 BTAU_RI_GC062_CA_154_24 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955910 SAMEA8133019 GC062_CA_154_24 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-10 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 6.4 ERX5124962 BTAU_RI_GC063_CA_154_02 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955833 SAMEA8132999 GC063_CA_154_02 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-10 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.5 ERX5124963 BTAU_RI_GC064_CA_154_04 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955822 SAMEA8133001 GC064_CA_154_04 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-08-27 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number not collected ERX5124964 BTAU_RI_GC065_CA_154_06 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955824 SAMEA8133003 GC065_CA_154_06 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-08-27 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number not collected ERX5124965 BTAU_RI_GC066_CA_154_05 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955823 SAMEA8133002 GC066_CA_154_05 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-09-25 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.0 ERX5124966 BTAU_RI_GC067_CA_154_10 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955889 SAMEA8133006 GC067_CA_154_10 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-10-12 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number not collected ERX5124967 BTAU_RI_GC068_CA_154_11 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955890 SAMEA8133007 GC068_CA_154_11 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-08-27 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.9 ERX5124968 BTAU_RI_GC069_CA_154_13 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955893 SAMEA8133009 GC069_CA_154_13 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-10 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.5 ERX5124969 BTAU_RI_GC070_CA_154_08 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955887 SAMEA8133004 GC070_CA_154_08 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-11 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.2 ERX5124970 BTAU_RI_GC071_CA_154_14 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955899 SAMEA8133010 GC071_CA_154_14 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-09-25 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 6.9 ERX5124971 BTAU_RI_GC072_CA_154_15 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955900 SAMEA8133011 GC072_CA_154_15 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-11 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 5.4 ERX5124972 BTAU_RI_GC073_CA_154_16 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955901 SAMEA8133012 GC073_CA_154_16 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-11 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 6.7 ERX5124973 BTAU_RI_GC074_CA_154_18 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955903 SAMEA8133014 GC074_CA_154_18 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-09 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.1 ERX5124974 BTAU_RI_GC075_CA_154_20 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955906 SAMEA8133016 GC075_CA_154_20 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-12-03 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.1 ERX5124975 BTAU_RI_GC076_CA_154_17 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955902 SAMEA8133013 GC076_CA_154_17 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-12-03 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number not collected ERX5124976 BTAU_RI_GC077_DE_M_23 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955821 SAMEA8133082 GC077_DE_M_23 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-10-12 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 6.7 ERX5124977 BTAU_RI_GC078_DE_M_10 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955813 SAMEA8133071 GC078_DE_M_10 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-12-03 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 2.2 ERX5124978 BTAU_RI_GC079_DE_M_01 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955842 SAMEA8133062 GC079_DE_M_01 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-10-12 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 9.2 ERX5124979 BTAU_RI_GC080_DE_M_11 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955814 SAMEA8133072 GC080_DE_M_11 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-09 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 8.0 ERX5124980 BTAU_RI_GC081_DE_M_16 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955817 SAMEA8133075 GC081_DE_M_16 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-08-27 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 8.0 ERX5124981 BTAU_RI_GC082_DE_M_12 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955815 SAMEA8133073 GC082_DE_M_12 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-11 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.3 ERX5124982 BTAU_RI_GC083_DE_M_06 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955847 SAMEA8133067 GC083_DE_M_06 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-10 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.3 ERX5124983 BTAU_RI_GC084_DE_M_20 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955819 SAMEA8133079 GC084_DE_M_20 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-10 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.3 ERX5124984 BTAU_RI_GC085_DE_M_03 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955844 SAMEA8133064 GC085_DE_M_03 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-12-03 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 2.4 ERX5124985 BTAU_RI_GC086_DE_M_18 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955818 SAMEA8133077 GC086_DE_M_18 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-09-25 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.6 ERX5124986 BTAU_RI_GC087_DE_M_05 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955846 SAMEA8133066 GC087_DE_M_05 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-10-12 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 6.7 ERX5124987 BTAU_RI_GC088_DE_M_09 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955812 SAMEA8133070 GC088_DE_M_09 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-11 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 1.0 ERX5124988 BTAU_RI_GC089_DE_M_08 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955848 SAMEA8133069 GC089_DE_M_08 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-09 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 6.7 ERX5124989 BTAU_RI_GC090_DE_M_04 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955845 SAMEA8133065 GC090_DE_M_04 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-09-25 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.1 ERX5124990 BTAU_RI_GC091_DE_M_22 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955820 SAMEA8133081 GC091_DE_M_22 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-11 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 6.4 ERX5124991 BTAU_RI_GC092_DE_M_02 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955843 SAMEA8133063 GC092_DE_M_02 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-10-12 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number not collected ERX5124992 BTAU_RI_GC093_DE_M_13 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955816 SAMEA8133074 GC093_DE_M_13 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-09-25 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.4 ERX5124993 BTAU_RI_GC094_DE_F_10 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955826 SAMEA8133048 GC094_DE_F_10 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-11 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 6.9 ERX5124994 BTAU_RI_GC095_DE_F_01 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955873 SAMEA8133039 GC095_DE_F_01 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-08-27 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 5.4 ERX5124995 BTAU_RI_GC096_DE_F_11 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955828 SAMEA8133049 GC096_DE_F_11 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-08-27 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 6.8 ERX5124996 BTAU_RI_GC097_DE_F_16 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955837 SAMEA8133054 GC097_DE_F_16 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-08-27 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 6.2 ERX5124997 BTAU_RI_GC098_DE_F_12 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955834 SAMEA8133050 GC098_DE_F_12 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-08-27 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 6.8 ERX5124998 BTAU_RI_GC099_DE_F_20 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955839 SAMEA8133058 GC099_DE_F_20 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-12-03 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.1 ERX5124999 BTAU_RI_GC100_DE_F_08 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955884 SAMEA8133046 GC100_DE_F_08 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-09-25 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 6.1 ERX5125000 BTAU_RI_GC101_DE_F_18 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955838 SAMEA8133056 GC101_DE_F_18 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-12-03 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 2.7 ERX5125001 BTAU_RI_GC102_DE_F_05 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955881 SAMEA8133043 GC102_DE_F_05 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-11 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.6 ERX5125002 BTAU_RI_GC103_DE_F_09 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955886 SAMEA8133047 GC103_DE_F_09 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-12-03 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 6.8 ERX5125003 BTAU_RI_GC104_DE_F_23 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955840 SAMEA8133060 GC104_DE_F_23 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-10 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 1.2 ERX5125004 BTAU_RI_GC105_DE_F_03 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955879 SAMEA8133041 GC105_DE_F_03 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-11-10 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 6.9 ERX5125005 BTAU_RI_GC106_DE_F_04 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955880 SAMEA8133042 GC106_DE_F_04 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-09-25 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 5.3 ERX5125006 BTAU_RI_GC107_DE_F_14 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955836 SAMEA8133052 GC107_DE_F_14 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-09-25 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 5.6 ERX5125007 BTAU_RI_GC108_DE_F_24 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955841 SAMEA8133061 GC108_DE_F_24 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-12-03 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 7.4 ERX5125008 BTAU_RI_GC109_DE_F_13 ERP127181 PRJEB43235 CAGE-sequencing of TSSs single end experiment using 5' CAP trapping on an Illumina NextSeq500 ERS5955835 SAMEA8133051 GC109_DE_F_13 OTHER TRANSCRIPTOMIC CAGE https://faang.org/ebi/ftp.ebi.ac.uk/faang/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf NextSeq 500 project FAANG secondary project FAANG assay type CAGE-seq sample storage frozen, -70 freezer sample storage processing cryopreservation in liquid nitrogen (dead tissue) sampling to preparation interval 1.0 year extraction protocol https://data.faang.org/api/fire_api/samples/ROSLIN_SOP_RNA_IsolationoftotalRNAfromfrozentissuesamples_20200720.pdf library preparation location EDINBURGH_CLINICAL_RESEARCH_FACILITY library preparation location longitude 55.9626436958928 decimal degrees library preparation location latitude -3.23510067329835 decimal degrees sequencing location EDINBURGH_CLINICAL_RESEARCH_FACILITY sequencing location longitude 55.9626436958928 decimal degrees sequencing location latitude -3.23510067329835 decimal degrees sequencing date 2020-08-27 YYYY-MM-DD experiment target TSS cage protocol ftp://ftp.faang.ebi.ac.uk/ftp/protocols/assays/ROSLIN_SOP_CAGE-library-preparation_20190903.pdf sequencing primer provider Integrated DNA Technologies restriction enzyme target sequence CAGCAG rna purity 260-280 ratio not collected rna purity 260-230 ratio not collected rna integrity number 5.2