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<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT center_name="The Wellcome Trust Sanger Institute" alias="SC_454_EXP_HLI13H101_RL25" accession="ERX705273">
    <IDENTIFIERS>
      <PRIMARY_ID>ERX705273</PRIMARY_ID>
      <SUBMITTER_ID namespace="SC">SC_454_EXP_HLI13H101_RL25</SUBMITTER_ID>
      <SUBMITTER_ID namespace="The Wellcome Trust Sanger Institute">SC_454_EXP_HLI13H101_RL25</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>454 GS FLX Titanium sequencing</TITLE>
    <STUDY_REF accession="ERP001257" refname="Universal_amplification__next_generation_sequencing_and_assembly_of_HIV_1_genomes-sc-2012-02-29T16:39:01Z-2142" refcenter="SC">
      <IDENTIFIERS>
        <PRIMARY_ID>ERP001257</PRIMARY_ID>
        <SUBMITTER_ID namespace="SC">Universal_amplification__next_generation_sequencing_and_assembly_of_HIV_1_genomes-sc-2012-02-29T16:39:01Z-2142</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of library HLI13H101.RL25, constructed from sample accession ERS661087 for study accession ERP001257.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="ERS661087" refname="2910_HIV_T146-sc-2231095" refcenter="SC">
        <IDENTIFIERS>
          <PRIMARY_ID>ERS661087</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMEA3257089</EXTERNAL_ID>
          <SUBMITTER_ID namespace="SC">2910_HIV_T146-sc-2231095</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>HLI13H101.RL25</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL read_group_tag="RL25" min_match="10" max_mismatch="1" match_edge="start">CTACTCGTAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="1"/>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="10" max_mismatch="1" match_edge="start">ACTACGGGTAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT center_name="The Wellcome Trust Sanger Institute" alias="SC_454_EXP_HLI13H101_RL26" accession="ERX705274">
    <IDENTIFIERS>
      <PRIMARY_ID>ERX705274</PRIMARY_ID>
      <SUBMITTER_ID namespace="SC">SC_454_EXP_HLI13H101_RL26</SUBMITTER_ID>
      <SUBMITTER_ID namespace="The Wellcome Trust Sanger Institute">SC_454_EXP_HLI13H101_RL26</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>454 GS FLX Titanium sequencing</TITLE>
    <STUDY_REF accession="ERP001257" refname="Universal_amplification__next_generation_sequencing_and_assembly_of_HIV_1_genomes-sc-2012-02-29T16:39:01Z-2142" refcenter="SC">
      <IDENTIFIERS>
        <PRIMARY_ID>ERP001257</PRIMARY_ID>
        <SUBMITTER_ID namespace="SC">Universal_amplification__next_generation_sequencing_and_assembly_of_HIV_1_genomes-sc-2012-02-29T16:39:01Z-2142</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of library HLI13H101.RL26, constructed from sample accession ERS661088 for study accession ERP001257.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="ERS661088" refname="2911_HIV_T146-sc-2231096" refcenter="SC">
        <IDENTIFIERS>
          <PRIMARY_ID>ERS661088</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMEA3257090</EXTERNAL_ID>
          <SUBMITTER_ID namespace="SC">2911_HIV_T146-sc-2231096</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>HLI13H101.RL26</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL read_group_tag="RL26" min_match="10" max_mismatch="1" match_edge="start">GTACAGTACGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="1"/>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="10" max_mismatch="1" match_edge="start">ACGTACGGTAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT center_name="The Wellcome Trust Sanger Institute" alias="SC_454_EXP_HLI13H101_RL27" accession="ERX705275">
    <IDENTIFIERS>
      <PRIMARY_ID>ERX705275</PRIMARY_ID>
      <SUBMITTER_ID namespace="SC">SC_454_EXP_HLI13H101_RL27</SUBMITTER_ID>
      <SUBMITTER_ID namespace="The Wellcome Trust Sanger Institute">SC_454_EXP_HLI13H101_RL27</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>454 GS FLX Titanium sequencing</TITLE>
    <STUDY_REF accession="ERP001257" refname="Universal_amplification__next_generation_sequencing_and_assembly_of_HIV_1_genomes-sc-2012-02-29T16:39:01Z-2142" refcenter="SC">
      <IDENTIFIERS>
        <PRIMARY_ID>ERP001257</PRIMARY_ID>
        <SUBMITTER_ID namespace="SC">Universal_amplification__next_generation_sequencing_and_assembly_of_HIV_1_genomes-sc-2012-02-29T16:39:01Z-2142</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of library HLI13H101.RL27, constructed from sample accession ERS661089 for study accession ERP001257.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="ERS661089" refname="2912_HIV_T146-sc-2231097" refcenter="SC">
        <IDENTIFIERS>
          <PRIMARY_ID>ERS661089</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMEA3257091</EXTERNAL_ID>
          <SUBMITTER_ID namespace="SC">2912_HIV_T146-sc-2231097</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>HLI13H101.RL27</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL read_group_tag="RL27" min_match="10" max_mismatch="1" match_edge="start">GTCGTACGTAT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="1"/>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="10" max_mismatch="1" match_edge="start">ATACGTAGGAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT center_name="The Wellcome Trust Sanger Institute" alias="SC_454_EXP_HLI13H101_RL28" accession="ERX705276">
    <IDENTIFIERS>
      <PRIMARY_ID>ERX705276</PRIMARY_ID>
      <SUBMITTER_ID namespace="SC">SC_454_EXP_HLI13H101_RL28</SUBMITTER_ID>
      <SUBMITTER_ID namespace="The Wellcome Trust Sanger Institute">SC_454_EXP_HLI13H101_RL28</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>454 GS FLX Titanium sequencing</TITLE>
    <STUDY_REF accession="ERP001257" refname="Universal_amplification__next_generation_sequencing_and_assembly_of_HIV_1_genomes-sc-2012-02-29T16:39:01Z-2142" refcenter="SC">
      <IDENTIFIERS>
        <PRIMARY_ID>ERP001257</PRIMARY_ID>
        <SUBMITTER_ID namespace="SC">Universal_amplification__next_generation_sequencing_and_assembly_of_HIV_1_genomes-sc-2012-02-29T16:39:01Z-2142</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of library HLI13H101.RL28, constructed from sample accession ERS661090 for study accession ERP001257.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="ERS661090" refname="2913_HIV_T146-sc-2231098" refcenter="SC">
        <IDENTIFIERS>
          <PRIMARY_ID>ERS661090</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMEA3257092</EXTERNAL_ID>
          <SUBMITTER_ID namespace="SC">2913_HIV_T146-sc-2231098</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>HLI13H101.RL28</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL read_group_tag="RL28" min_match="10" max_mismatch="1" match_edge="start">GTGTACGACGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="1"/>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="10" max_mismatch="1" match_edge="start">ACGTCGTGCAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT center_name="The Wellcome Trust Sanger Institute" alias="SC_454_EXP_HLI13H101_RL29" accession="ERX705277">
    <IDENTIFIERS>
      <PRIMARY_ID>ERX705277</PRIMARY_ID>
      <SUBMITTER_ID namespace="SC">SC_454_EXP_HLI13H101_RL29</SUBMITTER_ID>
      <SUBMITTER_ID namespace="The Wellcome Trust Sanger Institute">SC_454_EXP_HLI13H101_RL29</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>454 GS FLX Titanium sequencing</TITLE>
    <STUDY_REF accession="ERP001257" refname="Universal_amplification__next_generation_sequencing_and_assembly_of_HIV_1_genomes-sc-2012-02-29T16:39:01Z-2142" refcenter="SC">
      <IDENTIFIERS>
        <PRIMARY_ID>ERP001257</PRIMARY_ID>
        <SUBMITTER_ID namespace="SC">Universal_amplification__next_generation_sequencing_and_assembly_of_HIV_1_genomes-sc-2012-02-29T16:39:01Z-2142</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of library HLI13H101.RL29, constructed from sample accession ERS661091 for study accession ERP001257.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="ERS661091" refname="2914_HIV_T146-sc-2231099" refcenter="SC">
        <IDENTIFIERS>
          <PRIMARY_ID>ERS661091</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMEA3257093</EXTERNAL_ID>
          <SUBMITTER_ID namespace="SC">2914_HIV_T146-sc-2231099</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>HLI13H101.RL29</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL read_group_tag="RL29" min_match="10" max_mismatch="1" match_edge="start">ACACAGTGAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="1"/>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="10" max_mismatch="1" match_edge="start">ACTCACGGTGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT center_name="The Wellcome Trust Sanger Institute" alias="SC_454_EXP_HLI13H101_RL30" accession="ERX705278">
    <IDENTIFIERS>
      <PRIMARY_ID>ERX705278</PRIMARY_ID>
      <SUBMITTER_ID namespace="SC">SC_454_EXP_HLI13H101_RL30</SUBMITTER_ID>
      <SUBMITTER_ID namespace="The Wellcome Trust Sanger Institute">SC_454_EXP_HLI13H101_RL30</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>454 GS FLX Titanium sequencing</TITLE>
    <STUDY_REF accession="ERP001257" refname="Universal_amplification__next_generation_sequencing_and_assembly_of_HIV_1_genomes-sc-2012-02-29T16:39:01Z-2142" refcenter="SC">
      <IDENTIFIERS>
        <PRIMARY_ID>ERP001257</PRIMARY_ID>
        <SUBMITTER_ID namespace="SC">Universal_amplification__next_generation_sequencing_and_assembly_of_HIV_1_genomes-sc-2012-02-29T16:39:01Z-2142</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of library HLI13H101.RL30, constructed from sample accession ERS661092 for study accession ERP001257.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="ERS661092" refname="2915_HIV_T146-sc-2231100" refcenter="SC">
        <IDENTIFIERS>
          <PRIMARY_ID>ERS661092</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMEA3257094</EXTERNAL_ID>
          <SUBMITTER_ID namespace="SC">2915_HIV_T146-sc-2231100</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>HLI13H101.RL30</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL read_group_tag="RL30" min_match="10" max_mismatch="1" match_edge="start">ACACTCATACT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="1"/>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="10" max_mismatch="1" match_edge="start">AGTATGGGTGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT center_name="The Wellcome Trust Sanger Institute" alias="SC_454_EXP_HLI13H101_RL31" accession="ERX705279">
    <IDENTIFIERS>
      <PRIMARY_ID>ERX705279</PRIMARY_ID>
      <SUBMITTER_ID namespace="SC">SC_454_EXP_HLI13H101_RL31</SUBMITTER_ID>
      <SUBMITTER_ID namespace="The Wellcome Trust Sanger Institute">SC_454_EXP_HLI13H101_RL31</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>454 GS FLX Titanium sequencing</TITLE>
    <STUDY_REF accession="ERP001257" refname="Universal_amplification__next_generation_sequencing_and_assembly_of_HIV_1_genomes-sc-2012-02-29T16:39:01Z-2142" refcenter="SC">
      <IDENTIFIERS>
        <PRIMARY_ID>ERP001257</PRIMARY_ID>
        <SUBMITTER_ID namespace="SC">Universal_amplification__next_generation_sequencing_and_assembly_of_HIV_1_genomes-sc-2012-02-29T16:39:01Z-2142</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of library HLI13H101.RL31, constructed from sample accession ERS661093 for study accession ERP001257.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="ERS661093" refname="2916_HIV_T146-sc-2231101" refcenter="SC">
        <IDENTIFIERS>
          <PRIMARY_ID>ERS661093</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMEA3257095</EXTERNAL_ID>
          <SUBMITTER_ID namespace="SC">2916_HIV_T146-sc-2231101</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>HLI13H101.RL31</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL read_group_tag="RL31" min_match="10" max_mismatch="1" match_edge="start">ACAGACAGCGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="1"/>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="10" max_mismatch="1" match_edge="start">ACGCTGTGTGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
