ERP011193 PRJEB10017 ena-STUDY-INSTITUTE OF FOOD RESEARCH-28-07-2015-18:55:54:118-278 Generating tools for the molecular epidemiology of Campylobacter coli by next generation genome sequencing Aims: 1) TO DETERMINE THE GENOME SEQUENCE OF CAMPYLOBACTER COLI ISOLATES FROM DIFFERENT SOURCES: animal, food, water and environmental, and clinical laboratories. 2) TO DEFINE THE GENETIC VARIATION WITHIN THE CORE AND ACCESSORY REGIONS OF THE GENOME AS DEFINED BY THE SELECTED SERIES OF CAMPYLOBACTER COLI ISOLATES AND BY COMPARISON WITH C. JEJUNI DATA. 3) TO COMPARE THE NEWLY GENERATED CAMPYLOBACTER COLI GENOMIC INFORMATION WITH EXISTING TYPING METHODS 4) TO SUPPORT DEVELOPMENT OF A TYPING SCHEME SPECIFIC FOR CAMPYLOBACTER COLI USING THE INFORMATION OBTAINED FROM THE GENOMES Genomics of Campylobacter coli Aims: 1) TO DETERMINE THE GENOME SEQUENCE OF CAMPYLOBACTER COLI ISOLATES FROM DIFFERENT SOURCES: animal, food, water and environmental, and clinical laboratories. 2) TO DEFINE THE GENETIC VARIATION WITHIN THE CORE AND ACCESSORY REGIONS OF THE GENOME AS DEFINED BY THE SELECTED SERIES OF CAMPYLOBACTER COLI ISOLATES AND BY COMPARISON WITH C. JEJUNI DATA. 3) TO COMPARE THE NEWLY GENERATED CAMPYLOBACTER COLI GENOMIC INFORMATION WITH EXISTING TYPING METHODS 4) TO SUPPORT DEVELOPMENT OF A TYPING SCHEME SPECIFIC FOR CAMPYLOBACTER COLI USING THE INFORMATION OBTAINED FROM THE GENOMES PUBMED 23279096 PUBMED 23734204 PUBMED 26135867 PUBMED 24028687 PUBMED 24336384 PUBMED 22798256