ERS7621622 SAMEA9943299 341694 Peptostreptococcus stomatis This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764965 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943299 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764965_bin.10_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 76.84 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873340 sample name ERR2764965_bin.10_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621623 SAMEA9943300 1304 Streptococcus salivarius This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764883 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943300 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764883_bin.1_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 80.7 completeness software CheckM contamination score 1.65 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873317 sample name ERR2764883_bin.1_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621624 SAMEA9943301 60133 Prevotella pallens This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764840 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943301 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764840_bin.6_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 97.83 completeness software CheckM contamination score 0.34 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873308 sample name ERR2764840_bin.6_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621625 SAMEA9943302 484 Neisseria flavescens This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764907 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943302 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764907_bin.3_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 95.56 completeness software CheckM contamination score 0.68 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873323 sample name ERR2764907_bin.3_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621626 SAMEA9943303 179883 uncultured Candidatus Saccharibacteria bacterium This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764996 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943303 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764996_bin.1_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 72.41 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873347 sample name ERR2764996_bin.1_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621627 SAMEA9943304 249061 uncultured Actinomyces sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2765229 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943304 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2765229_bin.1_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 51.96 completeness software CheckM contamination score 2.92 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873350 sample name ERR2765229_bin.1_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621628 SAMEA9943305 28037 Streptococcus mitis This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2765153 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943305 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2765153_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 57.16 completeness software CheckM contamination score 0.6 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873331 sample name ERR2765153_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621629 SAMEA9943306 28132 Prevotella melaninogenica This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764967 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943306 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764967_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 78.36 completeness software CheckM contamination score 0.12 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873341 sample name ERR2764967_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621630 SAMEA9943307 1852361 Actinomyces bouchesdurhonensis This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764997 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943307 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764997_bin.10_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 94.77 completeness software CheckM contamination score 1.26 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873348 sample name ERR2764997_bin.10_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621631 SAMEA9943308 349924 uncultured Actinomycetaceae bacterium This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764899 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943308 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764899_bin.5_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 60.01 completeness software CheckM contamination score 1.58 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873322 sample name ERR2764899_bin.5_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621632 SAMEA9943309 249061 uncultured Actinomyces sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2765140 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943309 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2765140_bin.1_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 58.77 completeness software CheckM contamination score 2.1 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873325 sample name ERR2765140_bin.1_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621633 SAMEA9943310 729 Haemophilus parainfluenzae This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764923 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943310 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764923_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 93.66 completeness software CheckM contamination score 0.51 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873328 sample name ERR2764923_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621634 SAMEA9943311 316088 uncultured Rothia sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764895 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943311 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764895_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 66.37 completeness software CheckM contamination score 0.67 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873321 sample name ERR2764895_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621635 SAMEA9943312 28132 Prevotella melaninogenica This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764903 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943312 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764903_bin.3_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 97.62 completeness software CheckM contamination score 0.79 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873322 sample name ERR2764903_bin.3_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621636 SAMEA9943313 747375 uncultured Solobacterium sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764839 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943313 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764839_bin.6_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 100 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873308 sample name ERR2764839_bin.6_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621637 SAMEA9943314 1660 Schaalia odontolytica This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764920 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943314 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764920_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 99.29 completeness software CheckM contamination score 0.52 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873327 sample name ERR2764920_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621638 SAMEA9943315 159274 uncultured Porphyromonas sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764975 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943315 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764975_bin.4_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 98.87 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873342 sample name ERR2764975_bin.4_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621639 SAMEA9943316 370804 uncultured Prevotellaceae bacterium This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764811 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943316 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764811_bin.3_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 97.61 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873299 sample name ERR2764811_bin.3_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621640 SAMEA9943317 370804 uncultured Prevotellaceae bacterium This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764801 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943317 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764801_bin.1_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 93.63 completeness software CheckM contamination score 0.39 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873296 sample name ERR2764801_bin.1_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621641 SAMEA9943318 732 Aggregatibacter aphrophilus This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764820 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943318 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764820_bin.5_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 91.47 completeness software CheckM contamination score 1.55 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873302 sample name ERR2764820_bin.5_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621642 SAMEA9943319 484 Neisseria flavescens This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764840 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943319 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764840_bin.7_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 59.48 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873308 sample name ERR2764840_bin.7_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621643 SAMEA9943320 43675 Rothia mucilaginosa This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764996 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943320 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764996_bin.5_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 99.33 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873347 sample name ERR2764996_bin.5_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621644 SAMEA9943321 83427 uncultured Streptococcus sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764926 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943321 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764926_bin.1_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 78.02 completeness software CheckM contamination score 0.69 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873329 sample name ERR2764926_bin.1_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621645 SAMEA9943322 1662277 uncultured Stomatobaculum sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764996 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943322 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764996_bin.8_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 75.27 completeness software CheckM contamination score 1.9 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873347 sample name ERR2764996_bin.8_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621646 SAMEA9943323 28133 Prevotella nigrescens This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764794 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943323 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764794_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 52.65 completeness software CheckM contamination score 0.29 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873294 sample name ERR2764794_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621647 SAMEA9943324 249061 uncultured Actinomyces sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764948 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943324 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764948_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 73.38 completeness software CheckM contamination score 0.29 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873335 sample name ERR2764948_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621648 SAMEA9943325 484 Neisseria flavescens This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764996 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943325 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764996_bin.3_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 99.92 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873347 sample name ERR2764996_bin.3_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621649 SAMEA9943326 159274 uncultured Porphyromonas sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764965 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943326 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764965_bin.3_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 97.93 completeness software CheckM contamination score 0.16 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873340 sample name ERR2764965_bin.3_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621650 SAMEA9943327 153152 uncultured Lactobacillus sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764892 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943327 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764892_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 98.09 completeness software CheckM contamination score 0.27 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873319 sample name ERR2764892_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621651 SAMEA9943328 1662277 uncultured Stomatobaculum sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764900 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943328 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764900_bin.7_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 62.85 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873322 sample name ERR2764900_bin.7_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621652 SAMEA9943329 316088 uncultured Rothia sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764814 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943329 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764814_bin.8_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 53.29 completeness software CheckM contamination score 3.07 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873300 sample name ERR2764814_bin.8_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621653 SAMEA9943330 484 Neisseria flavescens This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2765004 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943330 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2765004_bin.4_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 50.78 completeness software CheckM contamination score 2.59 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873349 sample name ERR2765004_bin.4_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621654 SAMEA9943331 425941 Hoylesella nanceiensis This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764814 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943331 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764814_bin.4_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 96.92 completeness software CheckM contamination score 0.86 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873300 sample name ERR2764814_bin.4_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621655 SAMEA9943332 77133 uncultured bacterium This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764810 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943332 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764810_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 72.47 completeness software CheckM contamination score 1.12 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873299 sample name ERR2764810_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621656 SAMEA9943333 274587 uncultured Atopobium sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764805 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943333 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764805_bin.6_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 60.34 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873297 sample name ERR2764805_bin.6_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621657 SAMEA9943334 28132 Prevotella melaninogenica This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764838 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943334 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764838_bin.1_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 99.32 completeness software CheckM contamination score 0.06 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873307 sample name ERR2764838_bin.1_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621658 SAMEA9943335 729 Haemophilus parainfluenzae This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764823 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943335 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764823_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 56.27 completeness software CheckM contamination score 4.08 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873303 sample name ERR2764823_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621659 SAMEA9943336 1019 Capnocytophaga sputigena This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764920 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943336 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764920_bin.4_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 74.35 completeness software CheckM contamination score 0.98 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873327 sample name ERR2764920_bin.4_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621660 SAMEA9943337 60133 Prevotella pallens This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764810 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943337 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764810_bin.4_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 86.37 completeness software CheckM contamination score 0.34 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873299 sample name ERR2764810_bin.4_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621661 SAMEA9943338 43675 Rothia mucilaginosa This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2765224 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943338 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2765224_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 97.56 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873349 sample name ERR2765224_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621662 SAMEA9943339 28037 Streptococcus mitis This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2765141 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943339 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2765141_bin.1_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 78.84 completeness software CheckM contamination score 2.3 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873326 sample name ERR2765141_bin.1_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621663 SAMEA9943340 249061 uncultured Actinomyces sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764927 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943340 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764927_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 90.96 completeness software CheckM contamination score 3.3 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873330 sample name ERR2764927_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621664 SAMEA9943341 484 Neisseria flavescens This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764978 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943341 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764978_bin.4_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 95.31 completeness software CheckM contamination score 0.25 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873343 sample name ERR2764978_bin.4_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621665 SAMEA9943342 316088 uncultured Rothia sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764986 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943342 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764986_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 97.33 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873345 sample name ERR2764986_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621666 SAMEA9943343 29466 Veillonella parvula This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764830 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943343 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764830_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 79.43 completeness software CheckM contamination score 0.8 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873305 sample name ERR2764830_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621667 SAMEA9943344 60133 Prevotella pallens This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764870 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943344 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764870_bin.3_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 75.85 completeness software CheckM contamination score 1.13 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873314 sample name ERR2764870_bin.3_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621668 SAMEA9943345 1177574 Prevotella jejuni This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764926 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943345 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764926_bin.3_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 75.38 completeness software CheckM contamination score 1.56 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873329 sample name ERR2764926_bin.3_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621669 SAMEA9943346 316088 uncultured Rothia sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764848 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943346 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764848_bin.1_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 52.98 completeness software CheckM contamination score 0.06 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873310 sample name ERR2764848_bin.1_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621670 SAMEA9943347 162155 uncultured Treponema sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764965 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943347 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764965_bin.5_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 64.42 completeness software CheckM contamination score 1.4 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873340 sample name ERR2764965_bin.5_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621671 SAMEA9943348 77133 uncultured bacterium This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764819 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943348 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764819_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 72.47 completeness software CheckM contamination score 2.25 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873302 sample name ERR2764819_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621672 SAMEA9943349 249061 uncultured Actinomyces sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764949 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943349 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764949_bin.6_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 54.11 completeness software CheckM contamination score 0.88 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873336 sample name ERR2764949_bin.6_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621673 SAMEA9943350 1596 Lactobacillus gasseri This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764892 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943350 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764892_bin.3_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 94.66 completeness software CheckM contamination score 0.64 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873319 sample name ERR2764892_bin.3_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621674 SAMEA9943351 143393 [Eubacterium] sulci This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764806 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943351 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764806_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 71.63 completeness software CheckM contamination score 2.36 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873297 sample name ERR2764806_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621675 SAMEA9943352 39777 Veillonella atypica This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764915 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943352 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764915_bin.3_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 82.28 completeness software CheckM contamination score 0.6 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873325 sample name ERR2764915_bin.3_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621676 SAMEA9943353 249061 uncultured Actinomyces sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764998 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943353 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764998_bin.1_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 56.9 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873348 sample name ERR2764998_bin.1_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621677 SAMEA9943354 249061 uncultured Actinomyces sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764996 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943354 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764996_bin.6_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 100 completeness software CheckM contamination score 0.47 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873347 sample name ERR2764996_bin.6_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621678 SAMEA9943355 837 Porphyromonas gingivalis This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764965 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943355 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764965_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 67.18 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873340 sample name ERR2764965_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621679 SAMEA9943356 249061 uncultured Actinomyces sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764998 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943356 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764998_bin.11_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 74.66 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873348 sample name ERR2764998_bin.11_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621680 SAMEA9943357 28132 Prevotella melaninogenica This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764872 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943357 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764872_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 58.89 completeness software CheckM contamination score 1.69 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873315 sample name ERR2764872_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621681 SAMEA9943358 274587 uncultured Atopobium sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764949 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943358 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764949_bin.4_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 58.62 completeness software CheckM contamination score 2.46 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873336 sample name ERR2764949_bin.4_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621682 SAMEA9943359 274587 uncultured Atopobium sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764839 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943359 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764839_bin.3_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 82.85 completeness software CheckM contamination score 0.81 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873308 sample name ERR2764839_bin.3_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621683 SAMEA9943360 747372 uncultured Parvimonas sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764811 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943360 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764811_bin.4_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 53.89 completeness software CheckM contamination score 2.13 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873299 sample name ERR2764811_bin.4_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621684 SAMEA9943361 484 Neisseria flavescens This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764931 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943361 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764931_bin.5_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 95.97 completeness software CheckM contamination score 0.34 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873331 sample name ERR2764931_bin.5_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621685 SAMEA9943362 228604 Segatella salivae This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764998 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943362 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764998_bin.6_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 84.86 completeness software CheckM contamination score 1.55 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873348 sample name ERR2764998_bin.6_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621686 SAMEA9943363 28132 Prevotella melaninogenica This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764876 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943363 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764876_bin.1_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 55.01 completeness software CheckM contamination score 1.35 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873315 sample name ERR2764876_bin.1_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621687 SAMEA9943364 316088 uncultured Rothia sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2765074 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943364 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2765074_bin.1_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 55.61 completeness software CheckM contamination score 0.33 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873311 sample name ERR2765074_bin.1_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621688 SAMEA9943365 470565 Prevotella histicola This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764805 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943365 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764805_bin.3_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 89.18 completeness software CheckM contamination score 0.17 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873297 sample name ERR2764805_bin.3_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621689 SAMEA9943366 83427 uncultured Streptococcus sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764892 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943366 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764892_bin.1_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 50.86 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873319 sample name ERR2764892_bin.1_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621690 SAMEA9943367 729 Haemophilus parainfluenzae This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764810 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943367 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764810_bin.8_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 84.83 completeness software CheckM contamination score 0.9 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873299 sample name ERR2764810_bin.8_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621691 SAMEA9943368 47671 Lautropia mirabilis This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2765003 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943368 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2765003_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 95.11 completeness software CheckM contamination score 0.17 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873349 sample name ERR2765003_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621692 SAMEA9943369 796942 Stomatobaculum longum This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764884 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943369 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764884_bin.1_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 54.0 completeness software CheckM contamination score 0.63 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873317 sample name ERR2764884_bin.1_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621693 SAMEA9943370 316089 uncultured Granulicatella sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764919 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943370 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764919_bin.3_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 88.54 completeness software CheckM contamination score 1.87 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873326 sample name ERR2764919_bin.3_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621694 SAMEA9943371 83427 uncultured Streptococcus sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764931 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943371 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764931_bin.1_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 62.69 completeness software CheckM contamination score 0.95 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873331 sample name ERR2764931_bin.1_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621695 SAMEA9943372 39777 Veillonella atypica This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764860 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943372 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764860_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 55.52 completeness software CheckM contamination score 3.45 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873312 sample name ERR2764860_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621696 SAMEA9943373 316088 uncultured Rothia sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764924 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943373 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764924_bin.3_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 99.33 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873328 sample name ERR2764924_bin.3_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621697 SAMEA9943374 1305 Streptococcus sanguinis This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764863 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943374 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764863_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 91.04 completeness software CheckM contamination score 0.25 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873313 sample name ERR2764863_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621698 SAMEA9943375 370804 uncultured Prevotellaceae bacterium This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764820 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943375 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764820_bin.7_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 78.07 completeness software CheckM contamination score 0.41 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873302 sample name ERR2764820_bin.7_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621699 SAMEA9943376 179883 uncultured Candidatus Saccharibacteria bacterium This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2765092 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943376 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2765092_bin.1_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 58.29 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873314 sample name ERR2765092_bin.1_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621700 SAMEA9943377 316088 uncultured Rothia sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764967 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943377 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764967_bin.3_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 55.17 completeness software CheckM contamination score 3.45 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873341 sample name ERR2764967_bin.3_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621701 SAMEA9943378 237778 uncultured Neisseria sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764921 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943378 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764921_bin.1_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 94.76 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873328 sample name ERR2764921_bin.1_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621702 SAMEA9943379 187326 Megasphaera micronuciformis This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764965 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943379 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764965_bin.4_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 62.06 completeness software CheckM contamination score 0.42 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873340 sample name ERR2764965_bin.4_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621703 SAMEA9943380 254352 uncultured Gemella sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764813 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943380 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764813_bin.8_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 54.55 completeness software CheckM contamination score 4.44 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873300 sample name ERR2764813_bin.8_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621704 SAMEA9943381 860 Fusobacterium periodonticum This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764819 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943381 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764819_bin.4_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 63.48 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873302 sample name ERR2764819_bin.4_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621705 SAMEA9943382 153152 uncultured Lactobacillus sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764892 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943382 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764892_bin.4_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 97.44 completeness software CheckM contamination score 1.27 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873319 sample name ERR2764892_bin.4_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621706 SAMEA9943383 159274 uncultured Porphyromonas sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764812 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943383 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764812_bin.5_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 52.01 completeness software CheckM contamination score 1.23 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873299 sample name ERR2764812_bin.5_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621707 SAMEA9943384 327575 Capnocytophaga leadbetteri This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764810 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943384 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764810_bin.6_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 86.86 completeness software CheckM contamination score 0.16 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873299 sample name ERR2764810_bin.6_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621708 SAMEA9943385 544580 Actinomyces oris This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764998 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943385 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764998_bin.7_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 78.44 completeness software CheckM contamination score 1.35 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873348 sample name ERR2764998_bin.7_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621709 SAMEA9943386 370804 uncultured Prevotellaceae bacterium This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764965 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943386 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764965_bin.1_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 73.01 completeness software CheckM contamination score 0.74 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873340 sample name ERR2764965_bin.1_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621710 SAMEA9943387 77133 uncultured bacterium This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764806 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943387 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764806_bin.10_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 59.75 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873297 sample name ERR2764806_bin.10_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621711 SAMEA9943388 55565 Actinomyces graevenitzii This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764871 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943388 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764871_bin.3_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 96.29 completeness software CheckM contamination score 0.47 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873314 sample name ERR2764871_bin.3_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621712 SAMEA9943389 153152 uncultured Lactobacillus sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764892 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943389 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764892_bin.5_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 93.08 completeness software CheckM contamination score 0.59 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873319 sample name ERR2764892_bin.5_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621713 SAMEA9943390 159272 uncultured Prevotella sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764913 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943390 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764913_bin.3_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 68.76 completeness software CheckM contamination score 0.17 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873324 sample name ERR2764913_bin.3_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621714 SAMEA9943391 28132 Prevotella melaninogenica This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764998 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943391 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764998_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 96.23 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873348 sample name ERR2764998_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621715 SAMEA9943392 84135 Gemella sanguinis This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764795 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943392 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764795_bin.1_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 59.3 completeness software CheckM contamination score 1.15 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873294 sample name ERR2764795_bin.1_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621716 SAMEA9943393 55565 Actinomyces graevenitzii This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2765008 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943393 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2765008_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 71.95 completeness software CheckM contamination score 0.97 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873350 sample name ERR2765008_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621717 SAMEA9943394 83427 uncultured Streptococcus sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764930 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943394 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764930_bin.5_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 66.43 completeness software CheckM contamination score 0.68 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873331 sample name ERR2764930_bin.5_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621718 SAMEA9943395 249061 uncultured Actinomyces sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764950 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943395 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764950_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 65.14 completeness software CheckM contamination score 1.52 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873336 sample name ERR2764950_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621719 SAMEA9943396 39777 Veillonella atypica This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2765001 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943396 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2765001_bin.1_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 52.59 completeness software CheckM contamination score 4.31 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873348 sample name ERR2765001_bin.1_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621720 SAMEA9943397 249061 uncultured Actinomyces sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764965 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943397 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764965_bin.9_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 92.54 completeness software CheckM contamination score 0.47 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873340 sample name ERR2764965_bin.9_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621721 SAMEA9943398 484 Neisseria flavescens This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764854 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943398 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764854_bin.3_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 51.72 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873311 sample name ERR2764854_bin.3_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621722 SAMEA9943399 316088 uncultured Rothia sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2765114 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943399 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2765114_bin.1_metaWRAP_v1.1_MAG assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 98.11 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873319 sample name ERR2765114_bin.1_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621723 SAMEA9943400 114527 Mogibacterium diversum This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764804 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943400 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764804_bin.3_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 54.14 completeness software CheckM contamination score 0.71 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873297 sample name ERR2764804_bin.3_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621724 SAMEA9943401 187326 Megasphaera micronuciformis This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764883 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943401 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764883_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 84.19 completeness software CheckM contamination score 0.07 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873317 sample name ERR2764883_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621725 SAMEA9943402 39777 Veillonella atypica This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764805 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943402 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764805_bin.8_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 50.0 completeness software CheckM contamination score 0.86 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873297 sample name ERR2764805_bin.8_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621726 SAMEA9943403 316094 uncultured Abiotrophia sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764866 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943403 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764866_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 56.43 completeness software CheckM contamination score 0.11 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873313 sample name ERR2764866_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621727 SAMEA9943404 83427 uncultured Streptococcus sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764806 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943404 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764806_bin.1_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 52.36 completeness software CheckM contamination score 2.75 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873297 sample name ERR2764806_bin.1_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621728 SAMEA9943405 484 Neisseria flavescens This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2765216 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943405 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2765216_bin.1_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 67.41 completeness software CheckM contamination score 0.47 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873346 sample name ERR2765216_bin.1_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621729 SAMEA9943406 274587 uncultured Atopobium sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764909 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943406 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764909_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 82.66 completeness software CheckM contamination score 0.81 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873324 sample name ERR2764909_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621730 SAMEA9943407 28037 Streptococcus mitis This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2765150 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943407 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2765150_bin.1_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 74.17 completeness software CheckM contamination score 1.52 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873331 sample name ERR2765150_bin.1_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621731 SAMEA9943408 370804 uncultured Prevotellaceae bacterium This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764998 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943408 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764998_bin.9_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 95.29 completeness software CheckM contamination score 0.12 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873348 sample name ERR2764998_bin.9_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621732 SAMEA9943409 796942 Stomatobaculum longum This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764915 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943409 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764915_bin.1_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 62.66 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873325 sample name ERR2764915_bin.1_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621733 SAMEA9943410 860 Fusobacterium periodonticum This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764813 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943410 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764813_bin.5_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 62.2 completeness software CheckM contamination score 1.87 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873300 sample name ERR2764813_bin.5_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621734 SAMEA9943411 1276 Kytococcus sedentarius This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764958 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943411 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764958_bin.5_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 51.72 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873337 sample name ERR2764958_bin.5_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621735 SAMEA9943412 159268 uncultured Veillonella sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764805 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943412 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764805_bin.1_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 86.27 completeness software CheckM contamination score 0.6 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873297 sample name ERR2764805_bin.1_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621736 SAMEA9943413 876087 uncultured Xylanimonas sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764996 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943413 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764996_bin.4_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 60.66 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873347 sample name ERR2764996_bin.4_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621737 SAMEA9943414 159268 uncultured Veillonella sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764903 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943414 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764903_bin.8_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 89.6 completeness software CheckM contamination score 0.6 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873322 sample name ERR2764903_bin.8_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621738 SAMEA9943415 860 Fusobacterium periodonticum This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764820 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943415 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764820_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 71.46 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873302 sample name ERR2764820_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621739 SAMEA9943416 484 Neisseria flavescens This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764966 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943416 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764966_bin.3_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 100 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873341 sample name ERR2764966_bin.3_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621740 SAMEA9943417 370804 uncultured Prevotellaceae bacterium This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764804 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943417 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764804_bin.1_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 70.78 completeness software CheckM contamination score 0.23 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873297 sample name ERR2764804_bin.1_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621741 SAMEA9943418 316088 uncultured Rothia sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764937 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943418 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764937_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 96.78 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873332 sample name ERR2764937_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621742 SAMEA9943419 249061 uncultured Actinomyces sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2765000 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943419 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2765000_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 58.64 completeness software CheckM contamination score 0.87 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873348 sample name ERR2765000_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621743 SAMEA9943420 544580 Actinomyces oris This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764931 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943420 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764931_bin.4_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 99.73 completeness software CheckM contamination score 0.57 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873331 sample name ERR2764931_bin.4_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621744 SAMEA9943421 52227 Prevotella dentalis This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764965 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943421 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764965_bin.7_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 90.06 completeness software CheckM contamination score 0.34 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873340 sample name ERR2764965_bin.7_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621745 SAMEA9943422 729 Haemophilus parainfluenzae This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764926 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943422 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764926_bin.4_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 51.49 completeness software CheckM contamination score 3.45 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873329 sample name ERR2764926_bin.4_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621746 SAMEA9943423 43675 Rothia mucilaginosa This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764928 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943423 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764928_bin.5_metaWRAP_v1.1_MAG assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 97.67 completeness software CheckM contamination score 0.39 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873331 sample name ERR2764928_bin.5_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621747 SAMEA9943424 28132 Prevotella melaninogenica This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764846 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943424 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764846_bin.3_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software SPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 55.49 completeness software CheckM contamination score 0.17 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873309 sample name ERR2764846_bin.3_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621748 SAMEA9943425 729 Haemophilus parainfluenzae This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764919 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943425 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764919_bin.2_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 98.98 completeness software CheckM contamination score 0.59 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873326 sample name ERR2764919_bin.2_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621749 SAMEA9943426 274587 uncultured Atopobium sp. This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2765000 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943426 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2765000_bin.6_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2004-01-01 completeness score 83.06 completeness software CheckM contamination score 0.0 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) France geographic location (latitude) 48.79 geographic location (longitude) 2.4556 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873348 sample name ERR2765000_bin.6_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach ERS7621750 SAMEA9943427 729 Haemophilus parainfluenzae This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764839 of study ERP110622. ENA first public 2021-09-13 ENA last update 2021-09-13 External Id SAMEA9943427 INSDC center alias EMG INSDC center name EMG INSDC first public 2021-09-13T16:28:56Z INSDC last update 2021-09-13T16:28:56Z INSDC status public Submitter Id ERR2764839_bin.8_metaWRAP_v1.1_MAG assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaSPAdes v3.14.1 binning parameters MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. binning software metaWRAP v1.1 broker name EMG broker account, EMBL-EBI collection date 2011-01-01 completeness score 57.22 completeness software CheckM contamination score 0.53 environment (biome) Human oral metagenome environment (feature) Human oral cavity environment (material) Saliva geographic location (country and/or sea) Germany geographic location (latitude) 49.3988 geographic location (longitude) 8.6724 investigation type metagenome-assembled genome isolation source human oral metagenome metagenomic source human oral metagenome project name Several diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples). sample derived from SAMEA4873308 sample name ERR2764839_bin.8_metaWRAP_v1.1_MAG sequencing method Illumina HiSeq 2000 taxonomic identity marker multi-marker approach