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    <TITLE>Illumina HiSeq 2500 sequencing; Integrative and comparative genomics identifies the tyrosine kinase FES as a key melanoma tumor supppressor: WGS</TITLE>
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    <TITLE>Illumina HiSeq 2500 sequencing; Integrative and comparative genomics identifies the tyrosine kinase FES as a key melanoma tumor supppressor: WGS</TITLE>
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    <TITLE>Illumina HiSeq 2500 sequencing; Integrative and comparative genomics identifies the tyrosine kinase FES as a key melanoma tumor supppressor: WGS</TITLE>
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        </LIBRARY_LAYOUT>
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        <LIBRARY_CONSTRUCTION_PROTOCOL>The transgenic Tyr::CreERT2, BRafCA/+, LSL-BRafV600E/+, Ink4a-/-, Ptenfl/fl, Tyr::NRasQ61K/°, Trp53-/- , Trp53fl/fl, R26RLSL-eYFP mouse lines were described previously (Bosenberg M et al., 2006; Dankort D et al., 2007; Mercer et al., 2005, Krimpenfort P et al., 2001; Lesche R et al., 2002; Ackermann J et al., 2005; Jacks T et al., 1994; Jonkers, J. et al., 2001; Srinivas S et al., 2001) and were provided by Sheri Holmen and Lionel Larue. The characterization of Fes-/- mice has been reported previously and was genotyped and assayed for recombination using PCR (Zirngibl RA et al., 2002).  Whole-genome DNA libraries were prepared using the KAPA HTP Library preparation kit (Kapa Biosystems, Wilmington, MA, USA)</LIBRARY_CONSTRUCTION_PROTOCOL>
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    <TITLE>Illumina HiSeq 2500 sequencing; Integrative and comparative genomics identifies the tyrosine kinase FES as a key melanoma tumor supppressor: WGS</TITLE>
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      <DESIGN_DESCRIPTION>Integrative and comparative genomics identifies the tyrosine kinase FES as a key melanoma tumor supppressor: WGS</DESIGN_DESCRIPTION>
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        <LIBRARY_CONSTRUCTION_PROTOCOL>The transgenic Tyr::CreERT2, BRafCA/+, LSL-BRafV600E/+, Ink4a-/-, Ptenfl/fl, Tyr::NRasQ61K/°, Trp53-/- , Trp53fl/fl, R26RLSL-eYFP mouse lines were described previously (Bosenberg M et al., 2006; Dankort D et al., 2007; Mercer et al., 2005, Krimpenfort P et al., 2001; Lesche R et al., 2002; Ackermann J et al., 2005; Jacks T et al., 1994; Jonkers, J. et al., 2001; Srinivas S et al., 2001) and were provided by Sheri Holmen and Lionel Larue. The characterization of Fes-/- mice has been reported previously and was genotyped and assayed for recombination using PCR (Zirngibl RA et al., 2002).  Whole-genome DNA libraries were prepared using the KAPA HTP Library preparation kit (Kapa Biosystems, Wilmington, MA, USA)</LIBRARY_CONSTRUCTION_PROTOCOL>
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        <TAG>Experimental Factor: melanoma</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>Experimental Factor: 16</TAG>
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    <TITLE>Illumina HiSeq 2500 sequencing; Integrative and comparative genomics identifies the tyrosine kinase FES as a key melanoma tumor supppressor: WGS</TITLE>
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      <DESIGN_DESCRIPTION>Integrative and comparative genomics identifies the tyrosine kinase FES as a key melanoma tumor supppressor: WGS</DESIGN_DESCRIPTION>
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        <LIBRARY_CONSTRUCTION_PROTOCOL>The transgenic Tyr::CreERT2, BRafCA/+, LSL-BRafV600E/+, Ink4a-/-, Ptenfl/fl, Tyr::NRasQ61K/°, Trp53-/- , Trp53fl/fl, R26RLSL-eYFP mouse lines were described previously (Bosenberg M et al., 2006; Dankort D et al., 2007; Mercer et al., 2005, Krimpenfort P et al., 2001; Lesche R et al., 2002; Ackermann J et al., 2005; Jacks T et al., 1994; Jonkers, J. et al., 2001; Srinivas S et al., 2001) and were provided by Sheri Holmen and Lionel Larue. The characterization of Fes-/- mice has been reported previously and was genotyped and assayed for recombination using PCR (Zirngibl RA et al., 2002).  Whole-genome DNA libraries were prepared using the KAPA HTP Library preparation kit (Kapa Biosystems, Wilmington, MA, USA)</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
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        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
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        <TAG>Experimental Factor: lung carcinoma</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>Experimental Factor: 65</TAG>
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    </IDENTIFIERS>
    <TITLE>Illumina HiSeq 2500 sequencing; Integrative and comparative genomics identifies the tyrosine kinase FES as a key melanoma tumor supppressor: WGS</TITLE>
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        <PRIMARY_ID>ERP016417</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>Integrative and comparative genomics identifies the tyrosine kinase FES as a key melanoma tumor supppressor: WGS</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
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        <LIBRARY_CONSTRUCTION_PROTOCOL>The transgenic Tyr::CreERT2, BRafCA/+, LSL-BRafV600E/+, Ink4a-/-, Ptenfl/fl, Tyr::NRasQ61K/°, Trp53-/- , Trp53fl/fl, R26RLSL-eYFP mouse lines were described previously (Bosenberg M et al., 2006; Dankort D et al., 2007; Mercer et al., 2005, Krimpenfort P et al., 2001; Lesche R et al., 2002; Ackermann J et al., 2005; Jacks T et al., 1994; Jonkers, J. et al., 2001; Srinivas S et al., 2001) and were provided by Sheri Holmen and Lionel Larue. The characterization of Fes-/- mice has been reported previously and was genotyped and assayed for recombination using PCR (Zirngibl RA et al., 2002).  Whole-genome DNA libraries were prepared using the KAPA HTP Library preparation kit (Kapa Biosystems, Wilmington, MA, USA)</LIBRARY_CONSTRUCTION_PROTOCOL>
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        <TAG>Experimental Factor: 66</TAG>
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    <TITLE>Illumina HiSeq 2500 sequencing; Integrative and comparative genomics identifies the tyrosine kinase FES as a key melanoma tumor supppressor: WGS</TITLE>
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        <LIBRARY_LAYOUT>
          <SINGLE/>
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        <LIBRARY_CONSTRUCTION_PROTOCOL>The transgenic Tyr::CreERT2, BRafCA/+, LSL-BRafV600E/+, Ink4a-/-, Ptenfl/fl, Tyr::NRasQ61K/°, Trp53-/- , Trp53fl/fl, R26RLSL-eYFP mouse lines were described previously (Bosenberg M et al., 2006; Dankort D et al., 2007; Mercer et al., 2005, Krimpenfort P et al., 2001; Lesche R et al., 2002; Ackermann J et al., 2005; Jacks T et al., 1994; Jonkers, J. et al., 2001; Srinivas S et al., 2001) and were provided by Sheri Holmen and Lionel Larue. The characterization of Fes-/- mice has been reported previously and was genotyped and assayed for recombination using PCR (Zirngibl RA et al., 2002).  Whole-genome DNA libraries were prepared using the KAPA HTP Library preparation kit (Kapa Biosystems, Wilmington, MA, USA)</LIBRARY_CONSTRUCTION_PROTOCOL>
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        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
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        <TAG>Experimental Factor: hepatocellular carcinoma</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>Experimental Factor: 67</TAG>
        <VALUE>dose</VALUE>
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    </IDENTIFIERS>
    <TITLE>Illumina HiSeq 2500 sequencing; Integrative and comparative genomics identifies the tyrosine kinase FES as a key melanoma tumor supppressor: WGS</TITLE>
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        <PRIMARY_ID>ERP016417</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>Integrative and comparative genomics identifies the tyrosine kinase FES as a key melanoma tumor supppressor: WGS</DESIGN_DESCRIPTION>
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      </SAMPLE_DESCRIPTOR>
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        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>The transgenic Tyr::CreERT2, BRafCA/+, LSL-BRafV600E/+, Ink4a-/-, Ptenfl/fl, Tyr::NRasQ61K/°, Trp53-/- , Trp53fl/fl, R26RLSL-eYFP mouse lines were described previously (Bosenberg M et al., 2006; Dankort D et al., 2007; Mercer et al., 2005, Krimpenfort P et al., 2001; Lesche R et al., 2002; Ackermann J et al., 2005; Jacks T et al., 1994; Jonkers, J. et al., 2001; Srinivas S et al., 2001) and were provided by Sheri Holmen and Lionel Larue. The characterization of Fes-/- mice has been reported previously and was genotyped and assayed for recombination using PCR (Zirngibl RA et al., 2002).  Whole-genome DNA libraries were prepared using the KAPA HTP Library preparation kit (Kapa Biosystems, Wilmington, MA, USA)</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
      </ILLUMINA>
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        <TAG>Experimental Factor: normal</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>Experimental Factor: 68</TAG>
        <VALUE>dose</VALUE>
      </EXPERIMENT_ATTRIBUTE>
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  </EXPERIMENT>
</EXPERIMENT_SET>
