ERS1268562 SAMEA4357113 562 Escherichia coli ENA first public 2016-08-07 ENA last update 2016-07-26 External Id SAMEA4357113 INSDC center alias Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC center name Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC first public 2016-08-07T17:02:50Z INSDC last update 2016-07-26T14:02:26Z INSDC status public Submitter Id Isolat10_1_IonXpress_003_R_2012_11_15_08_02_41_user_SN1-87_Auto_user_SN1-87_88 broker name Centre for Genomic Epidemiology collected by The clinical microbiological laboratory at Hvidovre Hospital collection date 2012 environmental sample No geographic location (country and/or sea) Denmark geographic location (latitude) 55.6484 geographic location (longitude) 12.4667 host health state diseased host scientific name Homo sapiens is the sequenced pathogen host associated? Yes isolate E. coli, ST409 sample name Isolat10_1_IonXpress_003_R_2012_11_15_08_02_41_user_SN1-87_Auto_user_SN1-87_88 ERS1268563 SAMEA4357114 562 Escherichia coli ENA first public 2016-08-07 ENA last update 2016-07-26 External Id SAMEA4357114 INSDC center alias Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC center name Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC first public 2016-08-07T17:02:50Z INSDC last update 2016-07-26T14:02:26Z INSDC status public Submitter Id Isolat12_IonXpress_002_R_2012_11_06_08_45_48_user_SN1-79_Auto_user_SN1-79_80 broker name Centre for Genomic Epidemiology collected by The clinical microbiological laboratory at Hvidovre Hospital collection date 2012 environmental sample No geographic location (country and/or sea) Denmark geographic location (latitude) 55.6484 geographic location (longitude) 12.4667 host health state diseased host scientific name Homo sapiens is the sequenced pathogen host associated? Yes isolate E. coli, ST95 sample name Isolat12_IonXpress_002_R_2012_11_06_08_45_48_user_SN1-79_Auto_user_SN1-79_80 ERS1268564 SAMEA4357115 562 Escherichia coli ENA first public 2016-08-07 ENA last update 2016-07-26 External Id SAMEA4357115 INSDC center alias Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC center name Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC first public 2016-08-07T17:02:50Z INSDC last update 2016-07-26T14:02:26Z INSDC status public Submitter Id Isolat19_IonXpress_004_R_2012_11_15_08_02_41_user_SN1-87_Auto_user_SN1-87_88 broker name Centre for Genomic Epidemiology collected by The clinical microbiological laboratory at Hvidovre Hospital collection date 2012 environmental sample No geographic location (country and/or sea) Denmark geographic location (latitude) 55.6484 geographic location (longitude) 12.4667 host health state diseased host scientific name Homo sapiens is the sequenced pathogen host associated? Yes isolate . coli, ST127 sample name Isolat19_IonXpress_004_R_2012_11_15_08_02_41_user_SN1-87_Auto_user_SN1-87_88 ERS1268565 SAMEA4357116 562 Escherichia coli ENA first public 2016-08-07 ENA last update 2016-07-26 External Id SAMEA4357116 INSDC center alias Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC center name Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC first public 2016-08-07T17:02:50Z INSDC last update 2016-07-26T14:02:26Z INSDC status public Submitter Id Isolat20_IonXpress_005_R_2012_11_15_08_02_41_user_SN1-87_Auto_user_SN1-87_88 broker name Centre for Genomic Epidemiology collected by The clinical microbiological laboratory at Hvidovre Hospital collection date 2012 environmental sample No geographic location (country and/or sea) Denmark geographic location (latitude) 55.6484 geographic location (longitude) 12.4667 host health state diseased host scientific name Homo sapiens is the sequenced pathogen host associated? Yes isolate E. coli, ST1193 sample name Isolat20_IonXpress_005_R_2012_11_15_08_02_41_user_SN1-87_Auto_user_SN1-87_88 ERS1268566 SAMEA4357117 584 Proteus mirabilis ENA first public 2016-08-07 ENA last update 2016-07-26 External Id SAMEA4357117 INSDC center alias Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC center name Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC first public 2016-08-07T17:02:50Z INSDC last update 2016-07-26T14:02:26Z INSDC status public Submitter Id Isolat21_combine_IonXpress_006_R_2012_11_16_14_31_50 broker name Centre for Genomic Epidemiology collected by The clinical microbiological laboratory at Hvidovre Hospital collection date 2012 environmental sample No geographic location (country and/or sea) Denmark geographic location (latitude) 55.6484 geographic location (longitude) 12.4667 host health state diseased host scientific name Homo sapiens is the sequenced pathogen host associated? Yes isolate P. mirabilis sample name Isolat21_combine_IonXpress_006_R_2012_11_16_14_31_50 ERS1268567 SAMEA4357118 562 Escherichia coli ENA first public 2016-08-07 ENA last update 2016-07-26 External Id SAMEA4357118 INSDC center alias Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC center name Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC first public 2016-08-07T17:02:50Z INSDC last update 2016-07-26T14:02:26Z INSDC status public Submitter Id Isolat24_combine_IonXpress_009_R_2012_11_16_14_31_50 broker name Centre for Genomic Epidemiology collected by The clinical microbiological laboratory at Hvidovre Hospital collection date 2012 environmental sample No geographic location (country and/or sea) Denmark geographic location (latitude) 55.6484 geographic location (longitude) 12.4667 host health state diseased host scientific name Homo sapiens is the sequenced pathogen host associated? Yes isolate E. coli, ST227 sample name Isolat24_combine_IonXpress_009_R_2012_11_16_14_31_50 ERS1268568 SAMEA4357119 1351 Enterococcus faecalis ENA first public 2016-08-07 ENA last update 2016-07-26 External Id SAMEA4357119 INSDC center alias Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC center name Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC first public 2016-08-07T17:02:50Z INSDC last update 2016-07-26T14:02:26Z INSDC status public Submitter Id Isolat25_combine_IonXpress_010_R_2012_11_16_09_40_45 broker name Centre for Genomic Epidemiology collected by The clinical microbiological laboratory at Hvidovre Hospital collection date 2012 environmental sample No geographic location (country and/or sea) Denmark geographic location (latitude) 55.6484 geographic location (longitude) 12.4667 host health state diseased host scientific name Homo sapiens is the sequenced pathogen host associated? Yes isolate E. faecalis, ST16 sample name Isolat25_combine_IonXpress_010_R_2012_11_16_09_40_45 ERS1268569 SAMEA4357120 562 Escherichia coli ENA first public 2016-08-07 ENA last update 2016-07-26 External Id SAMEA4357120 INSDC center alias Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC center name Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC first public 2016-08-07T17:02:50Z INSDC last update 2016-07-26T14:02:26Z INSDC status public Submitter Id Isolat26_IonXpress_003_R_2012_11_06_08_45_48_user_SN1-79_Auto_user_SN1-79_80 broker name Centre for Genomic Epidemiology collected by The clinical microbiological laboratory at Hvidovre Hospital collection date 2012 environmental sample No geographic location (country and/or sea) Denmark geographic location (latitude) 55.6484 geographic location (longitude) 12.4667 host health state diseased host scientific name Homo sapiens is the sequenced pathogen host associated? Yes isolate E. coli, ST597 sample name Isolat26_IonXpress_003_R_2012_11_06_08_45_48_user_SN1-79_Auto_user_SN1-79_80 ERS1268570 SAMEA4357121 28035 Staphylococcus lugdunensis ENA first public 2016-08-07 ENA last update 2016-07-26 External Id SAMEA4357121 INSDC center alias Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC center name Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC first public 2016-08-07T17:02:50Z INSDC last update 2016-07-26T14:02:26Z INSDC status public Submitter Id Isolat27_IonXpress_012_R_2012_11_16_09_40_45_user_SN1-88_Auto_user_SN1-88_89 broker name Centre for Genomic Epidemiology collected by The clinical microbiological laboratory at Hvidovre Hospital collection date 2012 environmental sample No geographic location (country and/or sea) Denmark geographic location (latitude) 55.6484 geographic location (longitude) 12.4667 host health state diseased host scientific name Homo sapiens is the sequenced pathogen host associated? Yes isolate S. lugdunensis sample name Isolat27_IonXpress_012_R_2012_11_16_09_40_45_user_SN1-88_Auto_user_SN1-88_89 ERS1268571 SAMEA4357122 1312744 mixed culture ATCC 39027 ENA first public 2016-08-07 ENA last update 2016-07-26 External Id SAMEA4357122 INSDC center alias Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC center name Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC first public 2016-08-07T17:02:50Z INSDC last update 2016-07-26T14:02:26Z INSDC status public Submitter Id Isolat28_IonXpress_004_R_2012_11_06_08_45_48_user_SN1-79_Auto_user_SN1-79_80 broker name Centre for Genomic Epidemiology collected by The clinical microbiological laboratory at Hvidovre Hospital collection date 2012 environmental sample No geographic location (country and/or sea) Denmark geographic location (latitude) 55.6484 geographic location (longitude) 12.4667 host health state diseased host scientific name Homo sapiens is the sequenced pathogen host associated? Yes isolate Mixed culture sample name Isolat28_IonXpress_004_R_2012_11_06_08_45_48_user_SN1-79_Auto_user_SN1-79_80 ERS1268572 SAMEA4357123 1351 Enterococcus faecalis ENA first public 2016-08-07 ENA last update 2016-07-26 External Id SAMEA4357123 INSDC center alias Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC center name Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC first public 2016-08-07T17:02:50Z INSDC last update 2016-07-26T14:02:26Z INSDC status public Submitter Id Isolat29_combine_IonXpress_013_R_2012_11_21_13_36_55 broker name Centre for Genomic Epidemiology collected by The clinical microbiological laboratory at Hvidovre Hospital collection date 2012 environmental sample No geographic location (country and/or sea) Denmark geographic location (latitude) 55.6484 geographic location (longitude) 12.4667 host health state diseased host scientific name Homo sapiens is the sequenced pathogen host associated? Yes isolate E. faecalis, ST19 sample name Isolat29_combine_IonXpress_013_R_2012_11_21_13_36_55 ERS1268573 SAMEA4357124 1351 Enterococcus faecalis ENA first public 2016-08-07 ENA last update 2016-07-26 External Id SAMEA4357124 INSDC center alias Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC center name Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC first public 2016-08-07T17:02:50Z INSDC last update 2016-07-26T14:02:26Z INSDC status public Submitter Id Isolat31_1_IonXpress_009_R_2012_12_06_09_02_39_user_SN1-98_Auto_user_SN1-98_99 broker name Centre for Genomic Epidemiology collected by The clinical microbiological laboratory at Hvidovre Hospital collection date 2012 environmental sample No geographic location (country and/or sea) Denmark geographic location (latitude) 55.6484 geographic location (longitude) 12.4667 host health state diseased host scientific name Homo sapiens is the sequenced pathogen host associated? Yes isolate E. faecalis sample name Isolat31_1_IonXpress_009_R_2012_12_06_09_02_39_user_SN1-98_Auto_user_SN1-98_99 ERS1268574 SAMEA4357125 1351 Enterococcus faecalis ENA first public 2016-08-07 ENA last update 2016-07-26 External Id SAMEA4357125 INSDC center alias Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC center name Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC first public 2016-08-07T17:02:50Z INSDC last update 2016-07-26T14:02:26Z INSDC status public Submitter Id Isolat32_combine_IonXpress_010_R_2012_11_28_14_01_47 broker name Centre for Genomic Epidemiology collected by The clinical microbiological laboratory at Hvidovre Hospital collection date 2012 environmental sample No geographic location (country and/or sea) Denmark geographic location (latitude) 55.6484 geographic location (longitude) 12.4667 host health state diseased host scientific name Homo sapiens is the sequenced pathogen host associated? Yes isolate E. faecalis, ST41 sample name Isolat32_combine_IonXpress_010_R_2012_11_28_14_01_47 ERS1268575 SAMEA4357126 1351 Enterococcus faecalis ENA first public 2016-08-07 ENA last update 2016-07-26 External Id SAMEA4357126 INSDC center alias Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC center name Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC first public 2016-08-07T17:02:50Z INSDC last update 2016-07-26T14:02:26Z INSDC status public Submitter Id Isolat33_combine_IonXpress_011_R_2012_11_28_14_01_47 broker name Centre for Genomic Epidemiology collected by The clinical microbiological laboratory at Hvidovre Hospital collection date 2012 environmental sample No geographic location (country and/or sea) Denmark geographic location (latitude) 55.6484 geographic location (longitude) 12.4667 host health state diseased host scientific name Homo sapiens is the sequenced pathogen host associated? Yes isolate E. faecalis, ST40 sample name Isolat33_combine_IonXpress_011_R_2012_11_28_14_01_47 ERS1268576 SAMEA4357127 1312744 mixed culture ATCC 39027 ENA first public 2016-08-07 ENA last update 2016-07-26 External Id SAMEA4357127 INSDC center alias Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC center name Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC first public 2016-08-07T17:02:50Z INSDC last update 2016-07-26T14:02:26Z INSDC status public Submitter Id Isolat34_combine_IonXpress_012_R_2012_11_28_14_01_47 broker name Centre for Genomic Epidemiology collected by The clinical microbiological laboratory at Hvidovre Hospital collection date 2012 environmental sample No geographic location (country and/or sea) Denmark geographic location (latitude) 55.6484 geographic location (longitude) 12.4667 host health state diseased host scientific name Homo sapiens is the sequenced pathogen host associated? Yes isolate Mixed culture sample name Isolat34_combine_IonXpress_012_R_2012_11_28_14_01_47 ERS1268577 SAMEA4357128 1351 Enterococcus faecalis ENA first public 2016-08-07 ENA last update 2016-07-26 External Id SAMEA4357128 INSDC center alias Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC center name Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC first public 2016-08-07T17:02:50Z INSDC last update 2016-07-26T14:02:26Z INSDC status public Submitter Id Isolat35_combine_IonXpress_013_R_2012_11_28_14_01_47 broker name Centre for Genomic Epidemiology collected by The clinical microbiological laboratory at Hvidovre Hospital collection date 2012 environmental sample No geographic location (country and/or sea) Denmark geographic location (latitude) 55.6484 geographic location (longitude) 12.4667 host health state diseased host scientific name Homo sapiens is the sequenced pathogen host associated? Yes isolate E. coli, E. faecalis sample name Isolat35_combine_IonXpress_013_R_2012_11_28_14_01_47 ERS1268578 SAMEA4357129 1351 Enterococcus faecalis ENA first public 2016-08-07 ENA last update 2016-07-26 External Id SAMEA4357129 INSDC center alias Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC center name Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC first public 2016-08-07T17:02:50Z INSDC last update 2016-07-26T14:02:26Z INSDC status public Submitter Id Isolat3_IonXpress_006_R_2012_12_06_09_02_39_user_SN1-98_Auto_user_SN1-98_99 broker name Centre for Genomic Epidemiology collected by The clinical microbiological laboratory at Hvidovre Hospital collection date 2012 environmental sample No geographic location (country and/or sea) Denmark geographic location (latitude) 55.6484 geographic location (longitude) 12.4667 host health state diseased host scientific name Homo sapiens is the sequenced pathogen host associated? Yes isolate E. faecalis, ST40 sample name Isolat3_IonXpress_006_R_2012_12_06_09_02_39_user_SN1-98_Auto_user_SN1-98_99 ERS1268580 SAMEA4357131 562 Escherichia coli ENA first public 2016-08-07 ENA last update 2016-07-26 External Id SAMEA4357131 INSDC center alias Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC center name Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC first public 2016-08-07T17:02:50Z INSDC last update 2016-07-26T14:02:26Z INSDC status public Submitter Id Isolat6_IonXpress_001_R_2012_11_06_08_45_48_user_SN1-79_Auto_user_SN1-79_80 broker name Centre for Genomic Epidemiology collected by The clinical microbiological laboratory at Hvidovre Hospital collection date 2012 environmental sample No geographic location (country and/or sea) Denmark geographic location (latitude) 55.6484 geographic location (longitude) 12.4667 host health state diseased host scientific name Homo sapiens is the sequenced pathogen host associated? Yes isolate E. coli, ST14 sample name Isolat6_IonXpress_001_R_2012_11_06_08_45_48_user_SN1-79_Auto_user_SN1-79_80 ERS1268579 SAMEA4357130 290402 Clostridium beijerinckii NCIMB 8052 ENA first public 2016-08-07 ENA last update 2016-07-26 External Id SAMEA4357130 INSDC center alias Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC center name Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark INSDC first public 2016-08-07T17:02:50Z INSDC last update 2016-07-26T14:02:26Z INSDC status public Submitter Id Isolat4_IonXpress_007_R_2012_12_06_09_02_39_user_SN1-98_Auto_user_SN1-98_99 broker name Centre for Genomic Epidemiology collected by The clinical microbiological laboratory at Hvidovre Hospital collection date 2012 environmental sample No geographic location (country and/or sea) Denmark geographic location (latitude) 55.6484 geographic location (longitude) 12.4667 host health state diseased host scientific name Homo sapiens is the sequenced pathogen host associated? Yes isolate Clostridium sample name Isolat4_IonXpress_007_R_2012_12_06_09_02_39_user_SN1-98_Auto_user_SN1-98_99