ERX1659714 qiita_ptid_1714:10496.S1.2 qiita_ptid_1714:10496.S1.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294788 SAMEA4383339 10496.S1.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode CGTGTCTCTA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659715 qiita_ptid_1714:10496.S10.2 qiita_ptid_1714:10496.S10.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294789 SAMEA4383340 10496.S10.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TGTGAGTAGT center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659716 qiita_ptid_1714:10496.S11.2 qiita_ptid_1714:10496.S11.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294790 SAMEA4383341 10496.S11.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TACACGTGAT center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659717 qiita_ptid_1714:10496.S12.2 qiita_ptid_1714:10496.S12.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294791 SAMEA4383342 10496.S12.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode CAGTAGACGT center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659718 qiita_ptid_1714:10496.S13.2 qiita_ptid_1714:10496.S13.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294792 SAMEA4383343 10496.S13.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TGTCGTCGCA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659719 qiita_ptid_1714:10496.S14.2 qiita_ptid_1714:10496.S14.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294793 SAMEA4383344 10496.S14.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode CGACGTGACT center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659720 qiita_ptid_1714:10496.S15.2 qiita_ptid_1714:10496.S15.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294794 SAMEA4383345 10496.S15.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TCGATAGTGA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659721 qiita_ptid_1714:10496.S16.2 qiita_ptid_1714:10496.S16.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294795 SAMEA4383346 10496.S16.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode ATATCGCGAG center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659722 qiita_ptid_1714:10496.S17.2 qiita_ptid_1714:10496.S17.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294796 SAMEA4383347 10496.S17.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode AGCGACTAGC center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659723 qiita_ptid_1714:10496.S18.2 qiita_ptid_1714:10496.S18.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294797 SAMEA4383348 10496.S18.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TCGTCGCTCG center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659724 qiita_ptid_1714:10496.S19.2 qiita_ptid_1714:10496.S19.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294798 SAMEA4383349 10496.S19.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TGTACTACTC center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659725 qiita_ptid_1714:10496.S2.2 qiita_ptid_1714:10496.S2.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294799 SAMEA4383350 10496.S2.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode CTACGCTCTA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659726 qiita_ptid_1714:10496.S20.2 qiita_ptid_1714:10496.S20.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294800 SAMEA4383351 10496.S20.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode CGTCTAGTAC center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659727 qiita_ptid_1714:10496.S21.2 qiita_ptid_1714:10496.S21.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294801 SAMEA4383352 10496.S21.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode AGCTCACGTA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659728 qiita_ptid_1714:10496.S22.2 qiita_ptid_1714:10496.S22.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294802 SAMEA4383353 10496.S22.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode ATAGATAGAC center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659729 qiita_ptid_1714:10496.S23.2 qiita_ptid_1714:10496.S23.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294803 SAMEA4383354 10496.S23.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode ACATGACGAC center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659730 qiita_ptid_1714:10496.S24.2 qiita_ptid_1714:10496.S24.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294804 SAMEA4383355 10496.S24.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode ACGCGATCGA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659731 qiita_ptid_1714:10496.S25.2 qiita_ptid_1714:10496.S25.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294805 SAMEA4383356 10496.S25.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TACAGATCGT center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659732 qiita_ptid_1714:10496.S26.2 qiita_ptid_1714:10496.S26.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294806 SAMEA4383357 10496.S26.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode CATAGTAGTG center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659733 qiita_ptid_1714:10496.S27.2 qiita_ptid_1714:10496.S27.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294807 SAMEA4383358 10496.S27.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode ATCAGACACG center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659734 qiita_ptid_1714:10496.S28.2 qiita_ptid_1714:10496.S28.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294808 SAMEA4383359 10496.S28.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TCACGTACTA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659735 qiita_ptid_1714:10496.S29.2 qiita_ptid_1714:10496.S29.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294809 SAMEA4383360 10496.S29.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TATGCTAGTA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659736 qiita_ptid_1714:10496.S3.2 qiita_ptid_1714:10496.S3.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294810 SAMEA4383361 10496.S3.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode ACTGTACAGT center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659737 qiita_ptid_1714:10496.S31.2 qiita_ptid_1714:10496.S31.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294811 SAMEA4383362 10496.S31.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TGTAGTGTGA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659738 qiita_ptid_1714:10496.S32.2 qiita_ptid_1714:10496.S32.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294812 SAMEA4383363 10496.S32.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode ACTACTATGT center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659739 qiita_ptid_1714:10496.S33.2 qiita_ptid_1714:10496.S33.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294813 SAMEA4383364 10496.S33.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode AGTAGTGATC center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659740 qiita_ptid_1714:10496.S34.2 qiita_ptid_1714:10496.S34.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294814 SAMEA4383365 10496.S34.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode ACTCATCTAC center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659741 qiita_ptid_1714:10496.S36.2 qiita_ptid_1714:10496.S36.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294815 SAMEA4383366 10496.S36.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode ATAGAGTACT center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659742 qiita_ptid_1714:10496.S37.2 qiita_ptid_1714:10496.S37.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294816 SAMEA4383367 10496.S37.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode CGTACAGTCA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659743 qiita_ptid_1714:10496.S38.2 qiita_ptid_1714:10496.S38.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294817 SAMEA4383368 10496.S38.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode CTCGCGTGTC center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659744 qiita_ptid_1714:10496.S39.2 qiita_ptid_1714:10496.S39.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294818 SAMEA4383369 10496.S39.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode ACGACAGCTC center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659745 qiita_ptid_1714:10496.S4.2 qiita_ptid_1714:10496.S4.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294819 SAMEA4383370 10496.S4.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode ACAGTATATA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659746 qiita_ptid_1714:10496.S40.2 qiita_ptid_1714:10496.S40.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294820 SAMEA4383371 10496.S40.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode CGTAGACTAG center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659747 qiita_ptid_1714:10496.S41.2 qiita_ptid_1714:10496.S41.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294821 SAMEA4383372 10496.S41.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode ACGCGAGTAT center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659748 qiita_ptid_1714:10496.S42.2 qiita_ptid_1714:10496.S42.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294822 SAMEA4383373 10496.S42.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TCACGCGAGA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659749 qiita_ptid_1714:10496.S43.2 qiita_ptid_1714:10496.S43.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294823 SAMEA4383374 10496.S43.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode ACACATACGC center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659750 qiita_ptid_1714:10496.S44.2 qiita_ptid_1714:10496.S44.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294824 SAMEA4383375 10496.S44.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TACACACACT center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659751 qiita_ptid_1714:10496.S45.2 qiita_ptid_1714:10496.S45.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294825 SAMEA4383376 10496.S45.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TCGCACTAGT center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659752 qiita_ptid_1714:10496.S46.2 qiita_ptid_1714:10496.S46.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294826 SAMEA4383377 10496.S46.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TCGCTGCGTA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659753 qiita_ptid_1714:10496.S47.2 qiita_ptid_1714:10496.S47.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294827 SAMEA4383378 10496.S47.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode CGCGTATACA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659754 qiita_ptid_1714:10496.S48.2 qiita_ptid_1714:10496.S48.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294828 SAMEA4383379 10496.S48.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode ACTAGCAGTA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659755 qiita_ptid_1714:10496.S49.2 qiita_ptid_1714:10496.S49.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294829 SAMEA4383380 10496.S49.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode AGTACGCTAT center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659756 qiita_ptid_1714:10496.S5.2 qiita_ptid_1714:10496.S5.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294830 SAMEA4383381 10496.S5.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode CACGCTACGT center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659757 qiita_ptid_1714:10496.S50.2 qiita_ptid_1714:10496.S50.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294831 SAMEA4383382 10496.S50.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode ACGTCTCATC center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659758 qiita_ptid_1714:10496.S51.2 qiita_ptid_1714:10496.S51.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294832 SAMEA4383383 10496.S51.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TGACGTATGT center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659759 qiita_ptid_1714:10496.S52.2 qiita_ptid_1714:10496.S52.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294833 SAMEA4383384 10496.S52.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode ATACGACGTA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659760 qiita_ptid_1714:10496.S53.2 qiita_ptid_1714:10496.S53.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294834 SAMEA4383385 10496.S53.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode AGACGCACTC center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659761 qiita_ptid_1714:10496.S54.2 qiita_ptid_1714:10496.S54.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294835 SAMEA4383386 10496.S54.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TCTACGTAGC center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659762 qiita_ptid_1714:10496.S55.2 qiita_ptid_1714:10496.S55.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294836 SAMEA4383387 10496.S55.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode ACGACTACAG center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659763 qiita_ptid_1714:10496.S56.2 qiita_ptid_1714:10496.S56.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294837 SAMEA4383388 10496.S56.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode AGTATACATA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659764 qiita_ptid_1714:10496.S57.2 qiita_ptid_1714:10496.S57.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294838 SAMEA4383389 10496.S57.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode ATCTACTGAC center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659765 qiita_ptid_1714:10496.S59.2 qiita_ptid_1714:10496.S59.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294839 SAMEA4383390 10496.S59.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode AGACTATACT center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659766 qiita_ptid_1714:10496.S6.2 qiita_ptid_1714:10496.S6.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294840 SAMEA4383391 10496.S6.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode ACATACGCGT center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659767 qiita_ptid_1714:10496.S60.2 qiita_ptid_1714:10496.S60.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294841 SAMEA4383392 10496.S60.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode ACAGTCGTGC center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659768 qiita_ptid_1714:10496.S61.2 qiita_ptid_1714:10496.S61.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294842 SAMEA4383393 10496.S61.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TCGATCACGT center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659769 qiita_ptid_1714:10496.S62.2 qiita_ptid_1714:10496.S62.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294843 SAMEA4383394 10496.S62.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TACGAGTATG center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659770 qiita_ptid_1714:10496.S63.2 qiita_ptid_1714:10496.S63.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294844 SAMEA4383395 10496.S63.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode CGATCGTATA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659771 qiita_ptid_1714:10496.S64.2 qiita_ptid_1714:10496.S64.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294845 SAMEA4383396 10496.S64.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TATATATACA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659772 qiita_ptid_1714:10496.S65.2 qiita_ptid_1714:10496.S65.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294846 SAMEA4383397 10496.S65.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TGAGTCAGTA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659773 qiita_ptid_1714:10496.S66.2 qiita_ptid_1714:10496.S66.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294847 SAMEA4383398 10496.S66.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TAGTATCAGC center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659774 qiita_ptid_1714:10496.S67.2 qiita_ptid_1714:10496.S67.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294848 SAMEA4383399 10496.S67.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TACGCTGTCT center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659775 qiita_ptid_1714:10496.S68.2 qiita_ptid_1714:10496.S68.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294849 SAMEA4383400 10496.S68.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TACTCTCGTG center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659776 qiita_ptid_1714:10496.S69.2 qiita_ptid_1714:10496.S69.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294850 SAMEA4383401 10496.S69.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode ACGAGTGCGT center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659777 qiita_ptid_1714:10496.S7.2 qiita_ptid_1714:10496.S7.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294851 SAMEA4383402 10496.S7.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode CTATAGCGTA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659778 qiita_ptid_1714:10496.S71.2 qiita_ptid_1714:10496.S71.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294852 SAMEA4383403 10496.S71.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode ACTCGCGCAC center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659779 qiita_ptid_1714:10496.S72.2 qiita_ptid_1714:10496.S72.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294853 SAMEA4383404 10496.S72.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TAGTCGCATA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659780 qiita_ptid_1714:10496.S73.2 qiita_ptid_1714:10496.S73.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294854 SAMEA4383405 10496.S73.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode ATATAGTCGC center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659781 qiita_ptid_1714:10496.S74.2 qiita_ptid_1714:10496.S74.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294855 SAMEA4383406 10496.S74.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode CACGTAGATC center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659782 qiita_ptid_1714:10496.S76.2 qiita_ptid_1714:10496.S76.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294856 SAMEA4383407 10496.S76.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TGATACGTCT center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659783 qiita_ptid_1714:10496.S77.2 qiita_ptid_1714:10496.S77.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294857 SAMEA4383408 10496.S77.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TACGTCATCA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659784 qiita_ptid_1714:10496.S78.2 qiita_ptid_1714:10496.S78.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294858 SAMEA4383409 10496.S78.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TACTGAGCTA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659785 qiita_ptid_1714:10496.S79.2 qiita_ptid_1714:10496.S79.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294859 SAMEA4383410 10496.S79.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TCTAGCGACT center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659786 qiita_ptid_1714:10496.S8.2 qiita_ptid_1714:10496.S8.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294860 SAMEA4383411 10496.S8.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TAGTGTAGAT center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659787 qiita_ptid_1714:10496.S81.2 qiita_ptid_1714:10496.S81.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294861 SAMEA4383412 10496.S81.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode AGTGTATGTC center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659788 qiita_ptid_1714:10496.S82.2 qiita_ptid_1714:10496.S82.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294862 SAMEA4383413 10496.S82.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode CGCAGTACGA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659789 qiita_ptid_1714:10496.S83.2 qiita_ptid_1714:10496.S83.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294863 SAMEA4383414 10496.S83.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode AGTGACACAC center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659790 qiita_ptid_1714:10496.S84.2 qiita_ptid_1714:10496.S84.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294864 SAMEA4383415 10496.S84.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TCTATACTAT center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659791 qiita_ptid_1714:10496.S85.2 qiita_ptid_1714:10496.S85.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294865 SAMEA4383416 10496.S85.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode CGTACTCAGA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659792 qiita_ptid_1714:10496.S86.2 qiita_ptid_1714:10496.S86.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294866 SAMEA4383417 10496.S86.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TGTCACACGA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659793 qiita_ptid_1714:10496.S87.2 qiita_ptid_1714:10496.S87.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294867 SAMEA4383418 10496.S87.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TCTGACGTCA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659794 qiita_ptid_1714:10496.S88.2 qiita_ptid_1714:10496.S88.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294868 SAMEA4383419 10496.S88.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode AGTGCTACGA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659795 qiita_ptid_1714:10496.S89.2 qiita_ptid_1714:10496.S89.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294869 SAMEA4383420 10496.S89.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode AGAGCGTCAC center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659796 qiita_ptid_1714:10496.S9.2 qiita_ptid_1714:10496.S9.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294870 SAMEA4383421 10496.S9.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode ACGCTCGACA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659797 qiita_ptid_1714:10496.S91.2 qiita_ptid_1714:10496.S91.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294871 SAMEA4383422 10496.S91.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode AGCACTGTAG center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659798 qiita_ptid_1714:10496.S92.2 qiita_ptid_1714:10496.S92.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294872 SAMEA4383423 10496.S92.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TCTCTATGCG center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659799 qiita_ptid_1714:10496.S93.2 qiita_ptid_1714:10496.S93.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294873 SAMEA4383424 10496.S93.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode AGCGTCGTCT center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659800 qiita_ptid_1714:10496.S94.2 qiita_ptid_1714:10496.S94.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294874 SAMEA4383425 10496.S94.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode AGTCGAGAGA center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659801 qiita_ptid_1714:10496.S95.2 qiita_ptid_1714:10496.S95.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294875 SAMEA4383426 10496.S95.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode CGAGAGATAC center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g ERX1659802 qiita_ptid_1714:10496.S96.2 qiita_ptid_1714:10496.S96.2 ERP016868 We examined the effects of a fruit cell wall matrix (mango pulp) and a soluble dietary fibre (pectin) on the porcine large intestinal (LI) bacterial community (caecum, proximal, mid- and distal colon). Pigs were fed one of three diets varying in carbohydrate content: wheat starch only (control-C), or two diets where some starch was substituted by 15% mango pulp(M) or 10% pectin(P). Metabolite end-product analyses were conducted. Bacterial community profiles were analysed through pyrosequencing of the 16S rRNA gene. End-product analyses (except propionic acid), revealed significant differences between the three diets, as well as between the four LI sites (P<0.001). C samples had the lowest short-chain fatty acid (SCFA) concentrations. Distally, SCFA values decreased over all diets, while differences between diets were reduced. ERS1294876 SAMEA4383427 10496.S96.2 OTHER METAGENOMIC PCR LS454 16S V3-V4 341F/787R 454 GS FLX barcode TAGAGACGAG center_name Macrogen NGS pcr_primers FWD:TACGGGAGGCAGCAG; REV:CTACCAGGGTATACTAAT, primer TACGGGAGGCAGCAG run_prefix LJG-217-41-1-1_SFF samp_size 0.25,g