<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT xmlns:com="SRA.common" alias="E-MTAB-5026:Sample 1_s" broker_name="ArrayExpress" accession="ERX1667469">
    <IDENTIFIERS>
      <PRIMARY_ID>ERX1667469</PRIMARY_ID>
      <SUBMITTER_ID namespace="DEPARTMENT OF MOLECULAR NEUROSCIENCE AT THE UCL INSTITUTE OF NEUROLOGY. HTTP://ULELAB.INFO/">E-MTAB-5026:Sample 1_s</SUBMITTER_ID>
      <SUBMITTER_ID namespace="Department of Molecular Neuroscience at the UCL Institute of Neurology. http://ulelab.info/">E-MTAB-5026:Sample 1_s</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Illumina HiSeq 2000 sequencing; PTBP1 - Modified iCLIP</TITLE>
    <STUDY_REF accession="ERP016945">
      <IDENTIFIERS>
        <PRIMARY_ID>ERP016945</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>PTBP1 - Modified iCLIP</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="ERS1305306">
        <IDENTIFIERS>
          <PRIMARY_ID>ERS1305306</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMEA4393857</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Sample 1_s</LIBRARY_NAME>
        <LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>OTHER</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>HeLa cells were crosslinked with 0.15 mJ/cm 2 254nm UV light. Following the iCLIP protocol the retrieval of protein-bound RNAs and construction of Illumina compatible libraries was done as described in Huppertz et al, 2014. The 3 prime adapter sequence is AGATCGGAAG</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>Experimental Factor: replicate 1</TAG>
        <VALUE>individual</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>Experimental Factor: antibody PTBP1</TAG>
        <VALUE>immunoprecipitate</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
</EXPERIMENT_SET>
