ERS10358169 SAMEA12751920 244328 uncultured Clostridia bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751920 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin01 assembly quality Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 76.72 completeness software checkm v1.1.3 contamination score 1.34 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin01 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358173 SAMEA12751924 244328 uncultured Clostridia bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751924 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin05 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 74.43 completeness software checkm v1.1.3 contamination score 0.22 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin05 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358174 SAMEA12751925 446043 uncultured Lachnospira sp. This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751925 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin06 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 99.33 completeness software checkm v1.1.3 contamination score 0.67 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin06 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358177 SAMEA12751928 244328 uncultured Clostridia bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751928 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin09 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 79.01 completeness software checkm v1.1.3 contamination score 2.2 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin09 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358178 SAMEA12751929 2485925 Oscillospiraceae bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751929 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin10 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 87.92 completeness software checkm v1.1.3 contamination score 0 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin10 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358179 SAMEA12751930 658143 uncultured Tenericutes bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751930 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin11 assembly quality Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 93.82 completeness software checkm v1.1.3 contamination score 2.25 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin11 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358180 SAMEA12751931 2485925 Oscillospiraceae bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751931 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin12 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 97.99 completeness software checkm v1.1.3 contamination score 0 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin12 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358181 SAMEA12751932 291645 Bacteroides nordii This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751932 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin13 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 94.24 completeness software checkm v1.1.3 contamination score 0 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin13 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358182 SAMEA12751933 658143 uncultured Tenericutes bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751933 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin14 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 92.7 completeness software checkm v1.1.3 contamination score 2.81 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin14 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358183 SAMEA12751934 297314 uncultured Lachnospiraceae bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751934 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin15 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 87.77 completeness software checkm v1.1.3 contamination score 2.24 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin15 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358184 SAMEA12751935 446043 uncultured Lachnospira sp. This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751935 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin16 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 99.33 completeness software checkm v1.1.3 contamination score 0.67 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin16 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358185 SAMEA12751936 2093856 Butyricimonas faecalis This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751936 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin17 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 90.86 completeness software checkm v1.1.3 contamination score 3.23 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin17 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358186 SAMEA12751937 244328 uncultured Clostridia bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751937 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin18 assembly quality Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 78.79 completeness software checkm v1.1.3 contamination score 1.34 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin18 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358187 SAMEA12751938 28118 Odoribacter splanchnicus This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751938 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin19 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 92.74 completeness software checkm v1.1.3 contamination score 4.3 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin19 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358188 SAMEA12751939 165186 uncultured Ruminococcus sp. This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751939 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin20 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 97.99 completeness software checkm v1.1.3 contamination score 0 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin20 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358189 SAMEA12751940 707003 uncultured Oscillospiraceae bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751940 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin21 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 89.54 completeness software checkm v1.1.3 contamination score 2.01 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin21 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358190 SAMEA12751941 823 Parabacteroides distasonis This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751941 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin22 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 95.96 completeness software checkm v1.1.3 contamination score 1.92 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin22 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358191 SAMEA12751942 349920 uncultured Coriobacteriales bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751942 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin23 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 99.19 completeness software checkm v1.1.3 contamination score 0.27 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin23 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358192 SAMEA12751943 446043 uncultured Lachnospira sp. This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751943 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin24 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 98.66 completeness software checkm v1.1.3 contamination score 0.67 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin24 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358193 SAMEA12751944 297314 uncultured Lachnospiraceae bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751944 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin25 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 97.09 completeness software checkm v1.1.3 contamination score 0 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin25 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358175 SAMEA12751926 46506 Bacteroides stercoris This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751926 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin07 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 98.88 completeness software checkm v1.1.3 contamination score 0.93 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin07 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358176 SAMEA12751927 297314 uncultured Lachnospiraceae bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751927 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin08 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 99.78 completeness software checkm v1.1.3 contamination score 1.34 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin08 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358194 SAMEA12751945 244328 uncultured Clostridia bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751945 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin26 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 75.77 completeness software checkm v1.1.3 contamination score 1.45 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin26 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358195 SAMEA12751946 707003 uncultured Oscillospiraceae bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751946 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin27 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 98.88 completeness software checkm v1.1.3 contamination score 0 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin27 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358196 SAMEA12751947 1982626 Faecalibacillus intestinalis This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751947 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin28 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 99.06 completeness software checkm v1.1.3 contamination score 0 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin28 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358197 SAMEA12751948 853 Faecalibacterium prausnitzii This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751948 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin29 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 82.58 completeness software checkm v1.1.3 contamination score 1.08 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin29 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358198 SAMEA12751949 487174 Barnesiella intestinihominis This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751949 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin30 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 94.72 completeness software checkm v1.1.3 contamination score 0.57 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin30 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358199 SAMEA12751950 91750 uncultured Alphaproteobacteria bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751950 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin31 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 95.6 completeness software checkm v1.1.3 contamination score 0 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin31 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358200 SAMEA12751951 658143 uncultured Tenericutes bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751951 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin32 assembly quality Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 93.82 completeness software checkm v1.1.3 contamination score 2.25 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin32 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358201 SAMEA12751952 707003 uncultured Oscillospiraceae bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751952 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin33 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 90.94 completeness software checkm v1.1.3 contamination score 0.67 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin33 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358202 SAMEA12751953 301302 Roseburia faecis This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751953 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin34 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 99.21 completeness software checkm v1.1.3 contamination score 2.24 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin34 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358203 SAMEA12751954 658143 uncultured Tenericutes bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751954 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin35 assembly quality Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 93.82 completeness software checkm v1.1.3 contamination score 3.53 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin35 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358204 SAMEA12751955 707003 uncultured Oscillospiraceae bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751955 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin36 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 70.69 completeness software checkm v1.1.3 contamination score 1.34 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin36 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358205 SAMEA12751956 1898203 Lachnospiraceae bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751956 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin37 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 84.11 completeness software checkm v1.1.3 contamination score 0 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin37 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358206 SAMEA12751957 2173 Methanobrevibacter smithii This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751957 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin38 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 94.8 completeness software checkm v1.1.3 contamination score 0 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin38 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358207 SAMEA12751958 820 Bacteroides uniformis This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751958 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin39 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 72.41 completeness software checkm v1.1.3 contamination score 0 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin39 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358208 SAMEA12751959 46228 [Ruminococcus] lactaris This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751959 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin40 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 99.42 completeness software checkm v1.1.3 contamination score 0.19 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin40 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358209 SAMEA12751960 244328 uncultured Clostridia bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751960 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin41 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 72.49 completeness software checkm v1.1.3 contamination score 1.61 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin41 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358210 SAMEA12751961 216816 Bifidobacterium longum This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751961 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin42 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 76.6 completeness software checkm v1.1.3 contamination score 0.35 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin42 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358211 SAMEA12751962 707003 uncultured Oscillospiraceae bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751962 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin43 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 92.95 completeness software checkm v1.1.3 contamination score 4.03 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin43 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358212 SAMEA12751963 2137880 Candidatus Gastranaerophilales bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751963 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin44 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 88.89 completeness software checkm v1.1.3 contamination score 2.42 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin44 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358213 SAMEA12751964 707003 uncultured Oscillospiraceae bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751964 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin45 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 94.63 completeness software checkm v1.1.3 contamination score 1.68 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin45 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358214 SAMEA12751965 40545 Sutterella wadsworthensis This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751965 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin46 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 100 completeness software checkm v1.1.3 contamination score 1.86 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin46 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358215 SAMEA12751966 165190 uncultured Collinsella sp. This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751966 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin47 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 100 completeness software checkm v1.1.3 contamination score 2.42 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin47 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358216 SAMEA12751967 707003 uncultured Oscillospiraceae bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751967 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin48 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 83.5 completeness software checkm v1.1.3 contamination score 1.34 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin48 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358217 SAMEA12751968 28117 Alistipes putredinis This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751968 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin49 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 99.52 completeness software checkm v1.1.3 contamination score 0.96 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin49 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358218 SAMEA12751969 487173 Dialister succinatiphilus This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751969 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin50 assembly quality Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 100 completeness software checkm v1.1.3 contamination score 0.63 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin50 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358219 SAMEA12751970 244328 uncultured Clostridia bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751970 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin51 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 97.32 completeness software checkm v1.1.3 contamination score 0 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin51 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358220 SAMEA12751971 165186 uncultured Ruminococcus sp. This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751971 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin52 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 98.66 completeness software checkm v1.1.3 contamination score 0 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin52 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358221 SAMEA12751972 244328 uncultured Clostridia bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751972 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin53 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 94.35 completeness software checkm v1.1.3 contamination score 0.47 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin53 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358222 SAMEA12751973 297314 uncultured Lachnospiraceae bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751973 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin54 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 94.3 completeness software checkm v1.1.3 contamination score 1.29 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin54 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358223 SAMEA12751974 2585118 Alistipes communis This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751974 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin55 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 96.23 completeness software checkm v1.1.3 contamination score 1.44 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin55 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358224 SAMEA12751975 1852381 Duodenibacillus massiliensis This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751975 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin56 assembly quality Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 98.75 completeness software checkm v1.1.3 contamination score 0 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin56 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358225 SAMEA12751976 40518 Ruminococcus bromii This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751976 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin57 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 99.33 completeness software checkm v1.1.3 contamination score 1.68 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin57 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358226 SAMEA12751977 244328 uncultured Clostridia bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751977 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin58 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 96.98 completeness software checkm v1.1.3 contamination score 0.67 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin58 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358227 SAMEA12751978 2044939 Clostridia bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751978 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin59 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 97.72 completeness software checkm v1.1.3 contamination score 1.34 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin59 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358228 SAMEA12751979 301301 Roseburia hominis This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751979 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin60 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 99.46 completeness software checkm v1.1.3 contamination score 1.69 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin60 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358229 SAMEA12751980 707003 uncultured Oscillospiraceae bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751980 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin61 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 90.38 completeness software checkm v1.1.3 contamination score 0 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin61 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358230 SAMEA12751981 2044939 Clostridia bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751981 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin62 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 73.72 completeness software checkm v1.1.3 contamination score 0 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin62 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358231 SAMEA12751982 328813 Alistipes onderdonkii This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751982 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin63 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 96.39 completeness software checkm v1.1.3 contamination score 0.48 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin63 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358232 SAMEA12751983 220137 uncultured Mollicutes bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751983 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin64 assembly quality Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 100 completeness software checkm v1.1.3 contamination score 0.11 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin64 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358233 SAMEA12751984 297314 uncultured Lachnospiraceae bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751984 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin65 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 80.32 completeness software checkm v1.1.3 contamination score 0.67 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin65 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358234 SAMEA12751985 1898203 Lachnospiraceae bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751985 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin66 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 97.47 completeness software checkm v1.1.3 contamination score 2.22 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin66 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358235 SAMEA12751986 2301481 uncultured Muribaculaceae bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751986 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin67 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 99.06 completeness software checkm v1.1.3 contamination score 0.38 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin67 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358236 SAMEA12751987 244328 uncultured Clostridia bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751987 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin68 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 95.16 completeness software checkm v1.1.3 contamination score 1.61 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin68 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358237 SAMEA12751988 91750 uncultured Alphaproteobacteria bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751988 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin69 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 96.77 completeness software checkm v1.1.3 contamination score 0 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin69 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358238 SAMEA12751989 1501391 Alistipes inops This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751989 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin70 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 99.52 completeness software checkm v1.1.3 contamination score 0 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin70 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358239 SAMEA12751990 187979 Mitsuokella jalaludinii This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751990 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin71 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 100 completeness software checkm v1.1.3 contamination score 0.08 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin71 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358240 SAMEA12751991 59620 uncultured Clostridium sp. This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751991 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin72 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 70.1 completeness software checkm v1.1.3 contamination score 0 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin72 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358241 SAMEA12751992 214856 Alistipes finegoldii This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751992 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin73 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 100 completeness software checkm v1.1.3 contamination score 0 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin73 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358242 SAMEA12751993 1160721 Ruminococcus bicirculans (ex Wegman et al. 2014) This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751993 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin74 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 75.34 completeness software checkm v1.1.3 contamination score 0 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin74 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358243 SAMEA12751994 410072 Coprococcus comes This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751994 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin75 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 74.33 completeness software checkm v1.1.3 contamination score 3.09 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin75 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358244 SAMEA12751995 47678 Bacteroides caccae This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751995 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin76 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 92.72 completeness software checkm v1.1.3 contamination score 0.16 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin76 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358245 SAMEA12751996 246787 Bacteroides cellulosilyticus This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751996 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin77 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 99.26 completeness software checkm v1.1.3 contamination score 0.93 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin77 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358246 SAMEA12751997 458253 uncultured Coprococcus sp. This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA-FIRST-PUBLIC 2022-01-31T20:30:04Z ENA-LAST-UPDATE 2022-01-31T20:30:04Z External Id SAMEA12751997 INSDC center name INRA-META INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin78 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 99.33 completeness software checkm v1.1.3 contamination score 0.22 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin78 scientific_name uncultured Coprococcus sp. sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358247 SAMEA12751998 384638 [Bacteroides] pectinophilus This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751998 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin79 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 99.33 completeness software checkm v1.1.3 contamination score 0 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin79 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358248 SAMEA12751999 91750 uncultured Alphaproteobacteria bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12751999 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin80 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 98.92 completeness software checkm v1.1.3 contamination score 0 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin80 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358249 SAMEA12752000 1623490 uncultured Gemmiger sp. This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12752000 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin81 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 99.32 completeness software checkm v1.1.3 contamination score 0.68 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin81 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358250 SAMEA12752001 707003 uncultured Oscillospiraceae bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12752001 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin82 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 93.29 completeness software checkm v1.1.3 contamination score 0 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin82 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358251 SAMEA12752002 876091 uncultured Oscillibacter sp. This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12752002 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin83 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 70.36 completeness software checkm v1.1.3 contamination score 1.34 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin83 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358252 SAMEA12752003 658143 uncultured Tenericutes bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12752003 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin84 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 81.27 completeness software checkm v1.1.3 contamination score 1.69 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin84 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358253 SAMEA12752004 371601 Bacteroides xylanisolvens This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12752004 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin85 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 98.61 completeness software checkm v1.1.3 contamination score 2.08 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin85 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358254 SAMEA12752005 707003 uncultured Oscillospiraceae bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12752005 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin86 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 84.54 completeness software checkm v1.1.3 contamination score 0 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin86 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358255 SAMEA12752006 244328 uncultured Clostridia bacterium This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12752006 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin87 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 72.95 completeness software checkm v1.1.3 contamination score 0.67 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin87 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358256 SAMEA12752007 458253 uncultured Coprococcus sp. This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-01-31 ENA last update 2022-01-31 External Id SAMEA12752007 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-01-31T20:30:04Z INSDC last update 2022-01-31T20:30:04Z INSDC status public Submitter Id min17_bin88 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 96.2 completeness software checkm v1.1.3 contamination score 0.17 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin88 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358170 SAMEA12751921 454154 Paraprevotella clara This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-02-03 ENA last update 2022-02-03 External Id SAMEA12751921 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-02-03T16:21:41Z INSDC last update 2022-02-03T16:21:41Z INSDC status public Submitter Id min17_bin02 assembly quality Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 99.26 completeness software checkm v1.1.3 contamination score 0.31 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin02 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358171 SAMEA12751922 538949 uncultured Alistipes sp. This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-02-03 ENA last update 2022-02-03 External Id SAMEA12751922 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-02-03T16:21:41Z INSDC last update 2022-02-03T16:21:41Z INSDC status public Submitter Id min17_bin03 assembly quality Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 99.04 completeness software checkm v1.1.3 contamination score 0.96 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin03 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach ERS10358172 SAMEA12751923 446043 uncultured Lachnospira sp. This sample represents a metagenomic bin from the metagenomic run ERR8157883 ENA first public 2022-02-03 ENA last update 2022-02-03 External Id SAMEA12751923 INSDC center alias INRA-META INSDC center name Institut National pour la Recherche Agronomique (FRANCE) INSDC first public 2022-02-03T16:21:41Z INSDC last update 2022-02-03T16:21:41Z INSDC status public Submitter Id min17_bin04 assembly quality Many fragments with little to no review of assembly other than reporting of standard assembly statistics assembly software metaFlye 2.9-b1768 binning parameters MetaBAT defaults, SemiBin defaults with human_gut built-in model, metaWRAP bin_refinement module binning software MetaBAT v2.12.1, SemiBin v0.5.0, metaWRAP v1.3 collection date 2019 completeness score 81.19 completeness software checkm v1.1.3 contamination score 0.67 environment (biome) human-associated habitat environment (feature) human-associated habitat environment (material) feces geographic location (country and/or sea) France geographic location (latitude) 48.8583 geographic location (longitude) 2.2923 geographic location (region and locality) Jouy-en-Josas investigation type metagenome-assembled genome isolation source human gut metagenomic source human gut metagenome project name MGP PacBio sample derived from ERR8157883 sample name min17_bin04 sequencing method PacBio Sequel II taxonomic identity marker multi-marker approach