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      <SUBMITTER_ID namespace="BI">634658071213-9-S</SUBMITTER_ID>
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      <IDENTIFIERS>
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        <IDENTIFIERS>
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          <READ_SPEC>
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            <READ_LABEL>forward</READ_LABEL>
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      <SUBMITTER_ID namespace="BI">634658071213-10-S</SUBMITTER_ID>
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    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-602' containing sample 'BROAD:SEQUENCING_SAMPLE:16257.0'</TITLE>
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          <READ_SPEC>
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      <EXPERIMENT_ATTRIBUTE>
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    </EXPERIMENT_ATTRIBUTES>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX004132</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">634658071213-11-S</SUBMITTER_ID>
      <UUID>5ffd3917-c63a-4d13-8d98-a24c00cd85e8</UUID>
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    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-601' containing sample 'Bifidobacterium bifidum NCIMB 41171'</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001660</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30055</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bifidobacterium bifidum NCIMB 41171">Reference genome for the Human Microbiome Project Bifidobacterium_bifidum_NCIMB_41171_ltp_BBNG_WGS_Monoisolate</EXTERNAL_ID>
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    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bifidobacterium bifidum NCIMB 41171 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002749">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002749</PRIMARY_ID>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
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    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-599' containing sample 'BROAD:SEQUENCING_SAMPLE:14155.0'</TITLE>
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          <READ_SPEC>
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      <SUBMITTER_ID namespace="BI">634658071213-16-S</SUBMITTER_ID>
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          <READ_SPEC>
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      <EXPERIMENT_ATTRIBUTE>
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    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004136" center_name="BI" alias="635342071219-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004136</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">635342071219-1-S</SUBMITTER_ID>
      <UUID>bd806ab0-3fa0-40ac-a1c7-e3847cf0f8fa</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-599' containing sample 'BROAD:SEQUENCING_SAMPLE:14155.0'</TITLE>
    <STUDY_REF accession="SRP001659">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001659</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30077</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Lactobacillus paracasei subsp. paracasei 8700:2">Reference genome for the Human Microbiome Project Lactobacillus_paracasei_subsp_paracasei_87002_ltp_LBPG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Lactobacillus paracasei subsp. paracasei 8700:2 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002750">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002750</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:14155.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-599</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2007-12-20 06:47:08.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>14155.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:14155.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1265</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004137" center_name="BI" alias="635342071219-2-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004137</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">635342071219-2-S</SUBMITTER_ID>
      <UUID>2e85b78d-7cbf-4d6c-b629-6bd1eec5e4c6</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-604' containing sample 'BROAD:SEQUENCING_SAMPLE:16259.0'</TITLE>
    <STUDY_REF accession="SRP001665">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001665</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30075</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Helicobacter pullorum MIT 98-5489">Reference genome for the Human Microbiome Project Helicobacter_pullorum_MIT_98_5489_ltp_HPMG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Helicobacter pullorum MIT 98-5489 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002746">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002746</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16259.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-604</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2007-12-20 06:47:08.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16259.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16259.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1263</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004138" center_name="BI" alias="635456071219-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004138</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">635456071219-1-S</SUBMITTER_ID>
      <UUID>9ceeb53e-38a2-49fc-8c79-ccc3010d3eeb</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-601' containing sample 'Bifidobacterium bifidum NCIMB 41171'</TITLE>
    <STUDY_REF accession="SRP001660">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001660</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30055</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bifidobacterium bifidum NCIMB 41171">Reference genome for the Human Microbiome Project Bifidobacterium_bifidum_NCIMB_41171_ltp_BBNG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bifidobacterium bifidum NCIMB 41171 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002749">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002749</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Bifidobacterium bifidum NCIMB 41171</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-601</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2007-12-20 08:46:02.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>14161.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:14161.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1266</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004139" center_name="BI" alias="635456071219-2-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004139</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">635456071219-2-S</SUBMITTER_ID>
      <UUID>e115c7df-5d12-4cee-814f-94acd94eb0bb</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-602' containing sample 'BROAD:SEQUENCING_SAMPLE:16257.0'</TITLE>
    <STUDY_REF accession="SRP001663">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001663</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30071</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Helicobacter canadensis MIT 98-5491">reference genome for the Human Microbiome Project Helicobacter_canadensis_MIT_98_5491_ltp_HCMG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Helicobacter canadensis MIT 98-5491 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002748">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002748</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16257.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-602</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2007-12-20 08:46:02.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16257.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16257.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1261</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004140" center_name="BI" alias="635964071220-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004140</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">635964071220-1-S</SUBMITTER_ID>
      <UUID>bc30ead0-ee43-474e-8d21-c5bdcc0152c3</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-605' containing sample 'BROAD:SEQUENCING_SAMPLE:16667.0'</TITLE>
    <STUDY_REF accession="SRP001664">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001664</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30067</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Clostridiales bacterium 1_7_47FAA">reference genome for the Human Microbiome Project Clostridiales_bacterium_1_7_47FAA_1_7_47_FAA_ltp_CBFG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Clostridiales bacterium 1_7_47FAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002745">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002745</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16667.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-605</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2007-12-21 08:18:04.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16667.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16667.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1264</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004141" center_name="BI" alias="635964071220-2-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004141</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">635964071220-2-S</SUBMITTER_ID>
      <UUID>309fa989-982c-4d50-95f0-a206cb3fa591</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-605' containing sample 'BROAD:SEQUENCING_SAMPLE:16667.0'</TITLE>
    <STUDY_REF accession="SRP001664">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001664</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30067</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Clostridiales bacterium 1_7_47FAA">reference genome for the Human Microbiome Project Clostridiales_bacterium_1_7_47FAA_1_7_47_FAA_ltp_CBFG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Clostridiales bacterium 1_7_47FAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002745">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002745</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16667.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-605</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2007-12-21 08:18:04.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16667.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16667.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1264</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004142" center_name="BI" alias="631169071221-2-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004142</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">631169071221-2-S</SUBMITTER_ID>
      <UUID>19a0e9b6-fc04-4a1f-86b5-bbe5afa8e80c</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-603' containing sample 'BROAD:SEQUENCING_SAMPLE:16258.0'</TITLE>
    <STUDY_REF accession="SRP001662">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001662</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30073</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Helicobacter cinaedi CCUG 18818">Reference genome for the Human Microbiome Project Helicobacter_cinaedi_CCUG_18818_ltp_HCCG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Helicobacter cinaedi CCUG 18818 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002747">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002747</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16258.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-603</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2007-12-22 04:46:14.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16258.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16258.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1262</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004143" center_name="BI" alias="636575080122-3-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004143</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">636575080122-3-P</SUBMITTER_ID>
      <UUID>900c9845-0596-4071-85be-96cca1f98a17</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-639' containing sample 'BROAD:SEQUENCING_SAMPLE:16667.0'</TITLE>
    <STUDY_REF accession="SRP001664">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001664</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30067</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Clostridiales bacterium 1_7_47FAA">reference genome for the Human Microbiome Project Clostridiales_bacterium_1_7_47FAA_1_7_47_FAA_ltp_CBFG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Clostridiales bacterium 1_7_47FAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002745">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002745</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16667.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-639</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="363"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-01-22 23:07:54.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16667.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16667.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1264</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004144" center_name="BI" alias="636575080122-4-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004144</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">636575080122-4-P</SUBMITTER_ID>
      <UUID>911a7fff-1c4e-4eac-a05d-4a678abadad9</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-639' containing sample 'BROAD:SEQUENCING_SAMPLE:16667.0'</TITLE>
    <STUDY_REF accession="SRP001664">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001664</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30067</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Clostridiales bacterium 1_7_47FAA">reference genome for the Human Microbiome Project Clostridiales_bacterium_1_7_47FAA_1_7_47_FAA_ltp_CBFG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Clostridiales bacterium 1_7_47FAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002745">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002745</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16667.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-639</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="363"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-01-22 23:07:54.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16667.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16667.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1264</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004145" center_name="BI" alias="636575080122-5-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004145</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">636575080122-5-P</SUBMITTER_ID>
      <UUID>2e8c748d-a804-40f2-a25d-eb36bdab5c86</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-640' containing sample 'BROAD:SEQUENCING_SAMPLE:14155.0'</TITLE>
    <STUDY_REF accession="SRP001659">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001659</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30077</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Lactobacillus paracasei subsp. paracasei 8700:2">Reference genome for the Human Microbiome Project Lactobacillus_paracasei_subsp_paracasei_87002_ltp_LBPG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Lactobacillus paracasei subsp. paracasei 8700:2 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002750">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002750</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:14155.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-640</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="369"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-01-22 23:07:54.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>14155.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:14155.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1265</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004146" center_name="BI" alias="636575080122-6-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004146</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">636575080122-6-P</SUBMITTER_ID>
      <UUID>55f04c0c-ab0c-446e-a755-1d20a156b443</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-640' containing sample 'BROAD:SEQUENCING_SAMPLE:14155.0'</TITLE>
    <STUDY_REF accession="SRP001659">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001659</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30077</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Lactobacillus paracasei subsp. paracasei 8700:2">Reference genome for the Human Microbiome Project Lactobacillus_paracasei_subsp_paracasei_87002_ltp_LBPG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Lactobacillus paracasei subsp. paracasei 8700:2 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002750">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002750</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:14155.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-640</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="369"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-01-22 23:07:54.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>14155.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:14155.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1265</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004147" center_name="BI" alias="636575080122-7-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004147</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">636575080122-7-P</SUBMITTER_ID>
      <UUID>4bec0e4f-55da-4aff-9c21-238b829e5014</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-641' containing sample 'BROAD:SEQUENCING_SAMPLE:16259.0'</TITLE>
    <STUDY_REF accession="SRP001665">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001665</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30075</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Helicobacter pullorum MIT 98-5489">Reference genome for the Human Microbiome Project Helicobacter_pullorum_MIT_98_5489_ltp_HPMG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Helicobacter pullorum MIT 98-5489 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002746">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002746</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16259.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-641</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="411"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-01-22 23:07:54.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16259.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16259.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1263</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004148" center_name="BI" alias="636575080122-8-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004148</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">636575080122-8-P</SUBMITTER_ID>
      <UUID>d1462374-7860-48ed-a267-370f6300c719</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-641' containing sample 'BROAD:SEQUENCING_SAMPLE:16259.0'</TITLE>
    <STUDY_REF accession="SRP001665">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001665</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30075</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Helicobacter pullorum MIT 98-5489">Reference genome for the Human Microbiome Project Helicobacter_pullorum_MIT_98_5489_ltp_HPMG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Helicobacter pullorum MIT 98-5489 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002746">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002746</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16259.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-641</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="411"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-01-22 23:07:54.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16259.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16259.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1263</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004149" center_name="BI" alias="636575080122-9-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004149</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">636575080122-9-P</SUBMITTER_ID>
      <UUID>2fe4ba6c-1025-46af-b1aa-092b67c8c12f</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-642' containing sample 'BROAD:SEQUENCING_SAMPLE:16257.0'</TITLE>
    <STUDY_REF accession="SRP001663">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001663</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30071</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Helicobacter canadensis MIT 98-5491">reference genome for the Human Microbiome Project Helicobacter_canadensis_MIT_98_5491_ltp_HCMG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Helicobacter canadensis MIT 98-5491 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002748">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002748</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16257.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-642</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="429"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-01-22 23:07:54.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16257.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16257.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1261</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004150" center_name="BI" alias="636575080122-10-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004150</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">636575080122-10-P</SUBMITTER_ID>
      <UUID>67164ead-896e-49b4-8a0e-d8ecc641aa76</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-642' containing sample 'BROAD:SEQUENCING_SAMPLE:16257.0'</TITLE>
    <STUDY_REF accession="SRP001663">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001663</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30071</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Helicobacter canadensis MIT 98-5491">reference genome for the Human Microbiome Project Helicobacter_canadensis_MIT_98_5491_ltp_HCMG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Helicobacter canadensis MIT 98-5491 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002748">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002748</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16257.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-642</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="429"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-01-22 23:07:54.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16257.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16257.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1261</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004151" center_name="BI" alias="636575080122-11-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004151</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">636575080122-11-P</SUBMITTER_ID>
      <UUID>a5f71e08-ad9e-4ec6-91fe-61c6203d13b8</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-643' containing sample 'BROAD:SEQUENCING_SAMPLE:16258.0'</TITLE>
    <STUDY_REF accession="SRP001662">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001662</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30073</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Helicobacter cinaedi CCUG 18818">Reference genome for the Human Microbiome Project Helicobacter_cinaedi_CCUG_18818_ltp_HCCG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Helicobacter cinaedi CCUG 18818 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002747">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002747</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16258.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-643</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="472"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-01-22 23:07:54.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16258.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16258.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1262</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004152" center_name="BI" alias="636575080122-12-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004152</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">636575080122-12-P</SUBMITTER_ID>
      <UUID>4393414a-155b-4f81-a34b-8e5fc4c0f225</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-643' containing sample 'BROAD:SEQUENCING_SAMPLE:16258.0'</TITLE>
    <STUDY_REF accession="SRP001662">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001662</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30073</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Helicobacter cinaedi CCUG 18818">Reference genome for the Human Microbiome Project Helicobacter_cinaedi_CCUG_18818_ltp_HCCG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Helicobacter cinaedi CCUG 18818 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002747">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002747</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16258.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-643</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="472"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-01-22 23:07:54.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16258.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16258.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1262</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004153" center_name="BI" alias="636575080122-13-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004153</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">636575080122-13-P</SUBMITTER_ID>
      <UUID>4179dc09-c657-4830-a3b2-7780c9879088</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-644' containing sample 'Bifidobacterium bifidum NCIMB 41171'</TITLE>
    <STUDY_REF accession="SRP001660">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001660</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30055</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bifidobacterium bifidum NCIMB 41171">Reference genome for the Human Microbiome Project Bifidobacterium_bifidum_NCIMB_41171_ltp_BBNG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bifidobacterium bifidum NCIMB 41171 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002749">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002749</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Bifidobacterium bifidum NCIMB 41171</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-644</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="460"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-01-22 23:07:54.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>14161.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:14161.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1266</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004154" center_name="BI" alias="636575080122-14-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004154</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">636575080122-14-P</SUBMITTER_ID>
      <UUID>fc9cb124-f356-48bf-9b7b-2346e400aa01</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-644' containing sample 'Bifidobacterium bifidum NCIMB 41171'</TITLE>
    <STUDY_REF accession="SRP001660">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001660</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30055</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bifidobacterium bifidum NCIMB 41171">Reference genome for the Human Microbiome Project Bifidobacterium_bifidum_NCIMB_41171_ltp_BBNG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bifidobacterium bifidum NCIMB 41171 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002749">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002749</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Bifidobacterium bifidum NCIMB 41171</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-644</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="460"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-01-22 23:07:54.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>14161.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:14161.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1266</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004155" center_name="BI" alias="636575080122-15-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004155</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">636575080122-15-P</SUBMITTER_ID>
      <UUID>2307017e-22b2-4f36-b3e5-203a8caa119a</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-645' containing sample 'BROAD:SEQUENCING_SAMPLE:14158.0'</TITLE>
    <STUDY_REF accession="SRP001661">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001661</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30065</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bifidobacterium longum subsp. infantis CCUG 52486">Reference genome for the Human Microbiome Project Bifidobacterium_longum_subsp_infantis_CCUG_52486_ltp_BLIG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bifidobacterium longum subsp. infantis CCUG 52486 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002751">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002751</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:14158.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-645</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="331"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-01-22 23:07:54.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>14158.5</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:14158.5</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1267</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004156" center_name="BI" alias="636575080122-16-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004156</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">636575080122-16-P</SUBMITTER_ID>
      <UUID>267d6033-89b5-4cbc-98b8-c0b18e383833</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-645' containing sample 'BROAD:SEQUENCING_SAMPLE:14158.0'</TITLE>
    <STUDY_REF accession="SRP001661">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001661</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30065</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bifidobacterium longum subsp. infantis CCUG 52486">Reference genome for the Human Microbiome Project Bifidobacterium_longum_subsp_infantis_CCUG_52486_ltp_BLIG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bifidobacterium longum subsp. infantis CCUG 52486 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002751">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002751</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:14158.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-645</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="331"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-01-22 23:07:54.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>14158.5</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:14158.5</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1267</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004157" center_name="BI" alias="630515080104-16-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004157</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">630515080104-16-S</SUBMITTER_ID>
      <UUID>00acd912-66e7-463a-bdf8-e083cef287a8</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-615' containing sample 'BROAD:SEQUENCING_SAMPLE:14158.0'</TITLE>
    <STUDY_REF accession="SRP001661">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001661</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30065</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bifidobacterium longum subsp. infantis CCUG 52486">Reference genome for the Human Microbiome Project Bifidobacterium_longum_subsp_infantis_CCUG_52486_ltp_BLIG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bifidobacterium longum subsp. infantis CCUG 52486 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002751">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002751</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:14158.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-615</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-01-07 16:10:06.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>14158.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:14158.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1267</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004158" center_name="BI" alias="635551080109-2-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004158</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">635551080109-2-S</SUBMITTER_ID>
      <UUID>f87386b8-70fe-4806-81a5-54e263ea3f8b</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-615' containing sample 'BROAD:SEQUENCING_SAMPLE:14158.0'</TITLE>
    <STUDY_REF accession="SRP001661">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001661</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30065</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bifidobacterium longum subsp. infantis CCUG 52486">Reference genome for the Human Microbiome Project Bifidobacterium_longum_subsp_infantis_CCUG_52486_ltp_BLIG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bifidobacterium longum subsp. infantis CCUG 52486 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002751">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002751</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:14158.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-615</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-01-10 00:12:11.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>14158.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:14158.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1267</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004159" center_name="BI" alias="640071080124-5-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004159</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">640071080124-5-S</SUBMITTER_ID>
      <UUID>75ad53b5-43f3-49f2-8c6b-794ecab67ef7</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-601' containing sample 'Bifidobacterium bifidum NCIMB 41171'</TITLE>
    <STUDY_REF accession="SRP001660">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001660</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30055</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bifidobacterium bifidum NCIMB 41171">Reference genome for the Human Microbiome Project Bifidobacterium_bifidum_NCIMB_41171_ltp_BBNG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bifidobacterium bifidum NCIMB 41171 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002749">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002749</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Bifidobacterium bifidum NCIMB 41171</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-601</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-01-24 21:09:09.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>14161.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:14161.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1266</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004160" center_name="BI" alias="640396080125-1-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004160</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">640396080125-1-P</SUBMITTER_ID>
      <UUID>ee047ffd-e78c-4125-ac83-f294d5a46345</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-640' containing sample 'BROAD:SEQUENCING_SAMPLE:14155.0'</TITLE>
    <STUDY_REF accession="SRP001659">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001659</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30077</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Lactobacillus paracasei subsp. paracasei 8700:2">Reference genome for the Human Microbiome Project Lactobacillus_paracasei_subsp_paracasei_87002_ltp_LBPG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Lactobacillus paracasei subsp. paracasei 8700:2 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002750">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002750</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:14155.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-640</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="369"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-01-26 11:16:32.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>14155.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:14155.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1265</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004161" center_name="BI" alias="640396080125-2-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004161</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">640396080125-2-P</SUBMITTER_ID>
      <UUID>486176f2-84a6-4b17-9818-b380236e1ca7</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-641' containing sample 'BROAD:SEQUENCING_SAMPLE:16259.0'</TITLE>
    <STUDY_REF accession="SRP001665">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001665</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30075</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Helicobacter pullorum MIT 98-5489">Reference genome for the Human Microbiome Project Helicobacter_pullorum_MIT_98_5489_ltp_HPMG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Helicobacter pullorum MIT 98-5489 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002746">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002746</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16259.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-641</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="411"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-01-26 11:16:32.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16259.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16259.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1263</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004162" center_name="BI" alias="639769080130-4-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004162</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639769080130-4-S</SUBMITTER_ID>
      <UUID>2d33ab56-ef91-4c31-8155-1e30726afb66</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-601' containing sample 'Bifidobacterium bifidum NCIMB 41171'</TITLE>
    <STUDY_REF accession="SRP001660">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001660</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30055</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bifidobacterium bifidum NCIMB 41171">Reference genome for the Human Microbiome Project Bifidobacterium_bifidum_NCIMB_41171_ltp_BBNG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bifidobacterium bifidum NCIMB 41171 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002749">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002749</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Bifidobacterium bifidum NCIMB 41171</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-601</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-02-01 17:45:41.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>14161.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:14161.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1266</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004163" center_name="BI" alias="640085080131-1-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004163</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">640085080131-1-P</SUBMITTER_ID>
      <UUID>16f189bd-3421-4d3c-951c-0faa98c41328</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-642' containing sample 'BROAD:SEQUENCING_SAMPLE:16257.0'</TITLE>
    <STUDY_REF accession="SRP001663">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001663</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30071</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Helicobacter canadensis MIT 98-5491">reference genome for the Human Microbiome Project Helicobacter_canadensis_MIT_98_5491_ltp_HCMG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Helicobacter canadensis MIT 98-5491 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002748">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002748</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16257.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-642</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="429"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-02-04 11:06:44.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16257.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16257.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1261</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004164" center_name="BI" alias="640085080131-2-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004164</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">640085080131-2-P</SUBMITTER_ID>
      <UUID>eb6d23d4-242c-4d99-92a2-cb674621fe57</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-643' containing sample 'BROAD:SEQUENCING_SAMPLE:16258.0'</TITLE>
    <STUDY_REF accession="SRP001662">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001662</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30073</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Helicobacter cinaedi CCUG 18818">Reference genome for the Human Microbiome Project Helicobacter_cinaedi_CCUG_18818_ltp_HCCG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Helicobacter cinaedi CCUG 18818 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002747">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002747</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16258.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-643</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="472"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-02-04 11:06:44.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16258.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16258.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1262</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004165" center_name="BI" alias="640085080131-3-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004165</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">640085080131-3-P</SUBMITTER_ID>
      <UUID>0ea3e54c-8d34-479b-98be-d36bfe45dd38</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-644' containing sample 'Bifidobacterium bifidum NCIMB 41171'</TITLE>
    <STUDY_REF accession="SRP001660">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001660</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30055</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bifidobacterium bifidum NCIMB 41171">Reference genome for the Human Microbiome Project Bifidobacterium_bifidum_NCIMB_41171_ltp_BBNG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bifidobacterium bifidum NCIMB 41171 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002749">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002749</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Bifidobacterium bifidum NCIMB 41171</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-644</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="460"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-02-04 11:06:44.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>14161.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:14161.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1266</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004166" center_name="BI" alias="640085080131-4-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004166</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">640085080131-4-S</SUBMITTER_ID>
      <UUID>d0430d3e-6554-42de-9102-84498cb0fbef</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-601' containing sample 'Bifidobacterium bifidum NCIMB 41171'</TITLE>
    <STUDY_REF accession="SRP001660">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001660</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30055</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bifidobacterium bifidum NCIMB 41171">Reference genome for the Human Microbiome Project Bifidobacterium_bifidum_NCIMB_41171_ltp_BBNG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bifidobacterium bifidum NCIMB 41171 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002749">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002749</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Bifidobacterium bifidum NCIMB 41171</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-601</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-02-04 11:06:44.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>14161.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:14161.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1266</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004167" center_name="BI" alias="639506080201-4-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004167</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639506080201-4-P</SUBMITTER_ID>
      <UUID>742bd674-3047-4cf1-8f5f-a7fb756d8de6</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-645' containing sample 'BROAD:SEQUENCING_SAMPLE:14158.0'</TITLE>
    <STUDY_REF accession="SRP001661">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001661</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30065</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bifidobacterium longum subsp. infantis CCUG 52486">Reference genome for the Human Microbiome Project Bifidobacterium_longum_subsp_infantis_CCUG_52486_ltp_BLIG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bifidobacterium longum subsp. infantis CCUG 52486 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002751">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002751</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:14158.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-645</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="331"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-02-01 23:11:23.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.02.15</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>14158.5</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:14158.5</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1267</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004168" center_name="BI" alias="639573080201-2-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004168</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639573080201-2-P</SUBMITTER_ID>
      <UUID>df80620b-484a-4dfb-96d1-770b4c5e7ed8</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-639' containing sample 'BROAD:SEQUENCING_SAMPLE:16667.0'</TITLE>
    <STUDY_REF accession="SRP001664">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001664</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30067</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Clostridiales bacterium 1_7_47FAA">reference genome for the Human Microbiome Project Clostridiales_bacterium_1_7_47FAA_1_7_47_FAA_ltp_CBFG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Clostridiales bacterium 1_7_47FAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002745">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002745</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16667.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-639</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="363"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-10-22 11:02:01.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16667.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16667.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1264</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004169" center_name="BI" alias="639173080312-2-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004169</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639173080312-2-S</SUBMITTER_ID>
      <UUID>e1185d95-794a-40a2-91da-b723882003c7</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-674' containing sample 'BROAD:SEQUENCING_SAMPLE:16669.0'</TITLE>
    <STUDY_REF accession="SRP001615">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001615</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32457</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Clostridium sp. 7_2_43FAA">Reference genome for the Human Microbiome Project Clostridium_sp_7_2_43FAA_ltp_CSBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Clostridium sp. 7_2_43FAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002752">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002752</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16669.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-674</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-18 18:27:13.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16669.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16669.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1330</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004170" center_name="BI" alias="639265080313-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004170</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639265080313-1-S</SUBMITTER_ID>
      <UUID>24b0bf80-5c48-4ca1-af09-88ad0f4a3884</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-675' containing sample 'BROAD:SEQUENCING_SAMPLE:16662.0'</TITLE>
    <STUDY_REF accession="SRP001627">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001627</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32441</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 3_2_5">Reference genome for the Human Microbiome Project Bacteroides_sp_3_2_5_ltp_BSHG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bacteroides sp. 3_2_5 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002753">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002753</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16662.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-675</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-18 18:26:33.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16662.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16662.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1327</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004171" center_name="BI" alias="639265080313-2-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004171</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639265080313-2-S</SUBMITTER_ID>
      <UUID>d9a5eb32-dee8-4441-959b-bb8a1ea4bf23</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-676' containing sample 'Fusobacterium sp. 12_1B'</TITLE>
    <STUDY_REF accession="SRP001624">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001624</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32471</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium ulcerans 12-1B">Reference genome for the Human Microbiome Project Fusobacterium_ulcerans_12_1B_12_1B_ltp_HMPREF0402_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Fusobacterium ulcerans 12-1B via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS107454">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS107454</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 12_1B</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-676</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-18 18:26:33.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16680.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16680.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1331</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004172" center_name="BI" alias="639202080314-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004172</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639202080314-1-S</SUBMITTER_ID>
      <UUID>f92312b7-ac86-425e-a7e6-0ed4decb7e33</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-677' containing sample 'BROAD:SEQUENCING_SAMPLE:16688.0'</TITLE>
    <STUDY_REF accession="SRP001626">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001626</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32503</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Ruminococcus sp. 5_1_39BFAA">Reference genome for the Human Microbiome Project Ruminococcus_sp_5_1_39BFAA_ltp_RSAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Ruminococcus sp. 5_1_39BFAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002755">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002755</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16688.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-677</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
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          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
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        </PIPE_SECTION>
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    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16688.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1332</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004173" center_name="BI" alias="639202080314-2-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004173</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639202080314-2-S</SUBMITTER_ID>
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    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-678' containing sample 'BROAD:SEQUENCING_SAMPLE:16664.0'</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001631</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32443</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 4_3_47FAA">Reference genome for the Human Microbiome Project Bacteroides_sp_4_3_47FAA_ltp_BSFG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bacteroides sp. 4_3_47FAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002756">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002756</PRIMARY_ID>
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        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
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        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
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    <PROCESSING>
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          <STEP_INDEX>2008-06-17 12:06:13.0</STEP_INDEX>
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        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>16664.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16664.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1328</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004174" center_name="BI" alias="640049080307-5-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004174</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">640049080307-5-S</SUBMITTER_ID>
      <UUID>ecb2e56a-b4eb-489d-89c0-7454389a7d2e</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-679' containing sample 'BROAD:SEQUENCING_SAMPLE:16260.0'</TITLE>
    <STUDY_REF accession="SRP001619">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001619</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32489</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Helicobacter bilis ATCC 43879">Reference genome for the Human Microbiome Project Helicobacter_bilis_ATCC_43879_ltp_HRAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Helicobacter bilis ATCC 43879 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002757">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002757</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16260.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-679</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-12 15:14:23.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
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        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>16260.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16260.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1333</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004175" center_name="BI" alias="640049080307-6-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004175</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">640049080307-6-S</SUBMITTER_ID>
      <UUID>3c31bcd6-2e06-46c1-a229-9c2fd6d29973</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-679' containing sample 'BROAD:SEQUENCING_SAMPLE:16260.0'</TITLE>
    <STUDY_REF accession="SRP001619">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001619</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32489</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Helicobacter bilis ATCC 43879">Reference genome for the Human Microbiome Project Helicobacter_bilis_ATCC_43879_ltp_HRAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Helicobacter bilis ATCC 43879 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002757">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002757</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16260.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
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        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
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          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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    <PLATFORM>
      <LS454>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-12 15:14:23.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
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        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
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        <VALUE>16260.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16260.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1333</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004176" center_name="BI" alias="640049080307-7-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004176</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">640049080307-7-S</SUBMITTER_ID>
      <UUID>ab5864d7-ab2c-488a-b646-8bb159ff85cc</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-678' containing sample 'BROAD:SEQUENCING_SAMPLE:16664.0'</TITLE>
    <STUDY_REF accession="SRP001631">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001631</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32443</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 4_3_47FAA">Reference genome for the Human Microbiome Project Bacteroides_sp_4_3_47FAA_ltp_BSFG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bacteroides sp. 4_3_47FAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002756">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002756</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16664.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
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        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-12 15:14:23.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
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        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
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        <TAG>gssr_id</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16664.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1328</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004177" center_name="BI" alias="640049080307-8-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004177</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">640049080307-8-S</SUBMITTER_ID>
      <UUID>a080b7ec-71f7-485a-a1dd-b36ab194c34b</UUID>
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    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-678' containing sample 'BROAD:SEQUENCING_SAMPLE:16664.0'</TITLE>
    <STUDY_REF accession="SRP001631">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001631</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32443</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 4_3_47FAA">Reference genome for the Human Microbiome Project Bacteroides_sp_4_3_47FAA_ltp_BSFG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bacteroides sp. 4_3_47FAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002756">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002756</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16664.0</SUBMITTER_ID>
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      </SAMPLE_DESCRIPTOR>
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        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
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          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
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            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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    <PROCESSING>
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        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-12 15:14:23.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16664.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1328</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004178" center_name="BI" alias="640049080307-9-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004178</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">640049080307-9-S</SUBMITTER_ID>
      <UUID>c012b643-01f1-4edf-89bc-c5737cc4b284</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-677' containing sample 'BROAD:SEQUENCING_SAMPLE:16688.0'</TITLE>
    <STUDY_REF accession="SRP001626">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001626</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32503</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Ruminococcus sp. 5_1_39BFAA">Reference genome for the Human Microbiome Project Ruminococcus_sp_5_1_39BFAA_ltp_RSAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Ruminococcus sp. 5_1_39BFAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002755">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002755</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16688.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-677</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
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      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-12 15:14:23.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16688.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16688.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1332</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004179" center_name="BI" alias="640049080307-10-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004179</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">640049080307-10-S</SUBMITTER_ID>
      <UUID>a13d75e0-af47-4ae8-b208-414338e11092</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-677' containing sample 'BROAD:SEQUENCING_SAMPLE:16688.0'</TITLE>
    <STUDY_REF accession="SRP001626">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001626</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32503</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Ruminococcus sp. 5_1_39BFAA">Reference genome for the Human Microbiome Project Ruminococcus_sp_5_1_39BFAA_ltp_RSAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Ruminococcus sp. 5_1_39BFAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002755">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002755</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16688.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-677</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-12 15:14:23.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16688.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16688.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1332</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004180" center_name="BI" alias="640049080307-11-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004180</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">640049080307-11-S</SUBMITTER_ID>
      <UUID>e234ec55-0676-46b5-b594-ee72cbff3d75</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-676' containing sample 'Fusobacterium sp. 12_1B'</TITLE>
    <STUDY_REF accession="SRP001624">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001624</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32471</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium ulcerans 12-1B">Reference genome for the Human Microbiome Project Fusobacterium_ulcerans_12_1B_12_1B_ltp_HMPREF0402_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Fusobacterium ulcerans 12-1B via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS107454">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS107454</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 12_1B</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-676</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-12 15:14:23.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16680.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16680.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1331</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004181" center_name="BI" alias="640049080307-12-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004181</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">640049080307-12-S</SUBMITTER_ID>
      <UUID>810dcea8-298a-4d84-8710-05dc6387f01a</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-676' containing sample 'Fusobacterium sp. 12_1B'</TITLE>
    <STUDY_REF accession="SRP001624">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001624</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32471</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium ulcerans 12-1B">Reference genome for the Human Microbiome Project Fusobacterium_ulcerans_12_1B_12_1B_ltp_HMPREF0402_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Fusobacterium ulcerans 12-1B via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS107454">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS107454</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 12_1B</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-676</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-12 15:14:23.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16680.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16680.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1331</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004182" center_name="BI" alias="640049080307-13-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004182</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">640049080307-13-S</SUBMITTER_ID>
      <UUID>e7b86d01-8b1e-46fa-b27c-29ad2d89dac2</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-675' containing sample 'BROAD:SEQUENCING_SAMPLE:16662.0'</TITLE>
    <STUDY_REF accession="SRP001627">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001627</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32441</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 3_2_5">Reference genome for the Human Microbiome Project Bacteroides_sp_3_2_5_ltp_BSHG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bacteroides sp. 3_2_5 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002753">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002753</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16662.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-675</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-12 15:14:23.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16662.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16662.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1327</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004183" center_name="BI" alias="640049080307-14-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004183</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">640049080307-14-S</SUBMITTER_ID>
      <UUID>84065abf-e562-4854-ba51-8cd2ea6f1e1d</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-675' containing sample 'BROAD:SEQUENCING_SAMPLE:16662.0'</TITLE>
    <STUDY_REF accession="SRP001627">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001627</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32441</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 3_2_5">Reference genome for the Human Microbiome Project Bacteroides_sp_3_2_5_ltp_BSHG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bacteroides sp. 3_2_5 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002753">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002753</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16662.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-675</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-12 15:14:23.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16662.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16662.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1327</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004184" center_name="BI" alias="640049080307-15-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004184</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">640049080307-15-S</SUBMITTER_ID>
      <UUID>49fdbeb1-976d-4641-9763-87dd7a53d80c</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-674' containing sample 'BROAD:SEQUENCING_SAMPLE:16669.0'</TITLE>
    <STUDY_REF accession="SRP001615">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001615</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32457</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Clostridium sp. 7_2_43FAA">Reference genome for the Human Microbiome Project Clostridium_sp_7_2_43FAA_ltp_CSBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Clostridium sp. 7_2_43FAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002752">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002752</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16669.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-674</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-12 15:14:23.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16669.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16669.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1330</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004185" center_name="BI" alias="640049080307-16-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004185</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">640049080307-16-S</SUBMITTER_ID>
      <UUID>49363b86-fbd6-471c-b21e-b8f5fdcef3a5</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-674' containing sample 'BROAD:SEQUENCING_SAMPLE:16669.0'</TITLE>
    <STUDY_REF accession="SRP001615">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001615</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32457</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Clostridium sp. 7_2_43FAA">Reference genome for the Human Microbiome Project Clostridium_sp_7_2_43FAA_ltp_CSBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Clostridium sp. 7_2_43FAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002752">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002752</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16669.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-674</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-12 15:14:23.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16669.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16669.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1330</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004186" center_name="BI" alias="639267080402-4-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004186</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639267080402-4-S</SUBMITTER_ID>
      <UUID>4fea72b1-df0a-486e-b6a8-26838b4fd651</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-674' containing sample 'BROAD:SEQUENCING_SAMPLE:16669.0'</TITLE>
    <STUDY_REF accession="SRP001615">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001615</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32457</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Clostridium sp. 7_2_43FAA">Reference genome for the Human Microbiome Project Clostridium_sp_7_2_43FAA_ltp_CSBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Clostridium sp. 7_2_43FAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002752">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002752</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16669.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-674</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-04 15:37:56.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16669.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16669.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1330</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004187" center_name="BI" alias="639267080402-5-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004187</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639267080402-5-S</SUBMITTER_ID>
      <UUID>96a04e5d-5e6b-4ae7-932e-aa2fc717f055</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-675' containing sample 'BROAD:SEQUENCING_SAMPLE:16662.0'</TITLE>
    <STUDY_REF accession="SRP001627">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001627</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32441</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 3_2_5">Reference genome for the Human Microbiome Project Bacteroides_sp_3_2_5_ltp_BSHG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bacteroides sp. 3_2_5 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002753">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002753</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16662.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-675</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-04 15:37:56.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16662.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16662.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1327</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004188" center_name="BI" alias="639267080402-8-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004188</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639267080402-8-P</SUBMITTER_ID>
      <UUID>e60c315d-266a-4e72-95eb-6302edab5b64</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-694' containing sample 'BROAD:SEQUENCING_SAMPLE:16662.0'</TITLE>
    <STUDY_REF accession="SRP001627">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001627</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32441</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 3_2_5">Reference genome for the Human Microbiome Project Bacteroides_sp_3_2_5_ltp_BSHG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bacteroides sp. 3_2_5 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002753">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002753</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16662.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-694</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="350"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-04 15:37:56.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16662.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16662.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1327</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004189" center_name="BI" alias="639267080402-9-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004189</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639267080402-9-P</SUBMITTER_ID>
      <UUID>3662f53a-e155-4678-8e5b-1f0a3958fcc9</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-694' containing sample 'BROAD:SEQUENCING_SAMPLE:16662.0'</TITLE>
    <STUDY_REF accession="SRP001627">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001627</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32441</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 3_2_5">Reference genome for the Human Microbiome Project Bacteroides_sp_3_2_5_ltp_BSHG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bacteroides sp. 3_2_5 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002753">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002753</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16662.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-694</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="350"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-04 15:37:56.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16662.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16662.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1327</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004190" center_name="BI" alias="639267080402-10-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004190</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639267080402-10-P</SUBMITTER_ID>
      <UUID>3fb6969d-7b01-4cc6-945c-369ed572c3a5</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-695' containing sample 'BROAD:SEQUENCING_SAMPLE:16669.0'</TITLE>
    <STUDY_REF accession="SRP001615">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001615</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32457</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Clostridium sp. 7_2_43FAA">Reference genome for the Human Microbiome Project Clostridium_sp_7_2_43FAA_ltp_CSBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Clostridium sp. 7_2_43FAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002752">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002752</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16669.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-695</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="350"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-04 15:37:56.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16669.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16669.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1330</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004191" center_name="BI" alias="639267080402-11-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004191</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639267080402-11-P</SUBMITTER_ID>
      <UUID>3e9f0e49-7c38-4831-8361-9d0b38092ee0</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-695' containing sample 'BROAD:SEQUENCING_SAMPLE:16669.0'</TITLE>
    <STUDY_REF accession="SRP001615">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001615</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32457</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Clostridium sp. 7_2_43FAA">Reference genome for the Human Microbiome Project Clostridium_sp_7_2_43FAA_ltp_CSBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Clostridium sp. 7_2_43FAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002752">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002752</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16669.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-695</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="350"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-04 15:37:56.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16669.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16669.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1330</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004192" center_name="BI" alias="639652080318-4-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004192</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639652080318-4-S</SUBMITTER_ID>
      <UUID>24d024f2-396a-46da-9970-fa47a9620a1c</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-685' containing sample 'BROAD:SEQUENCING_SAMPLE:18640.0'</TITLE>
    <STUDY_REF accession="SRP001623">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001623</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32499</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Oxalobacter formigenes OXCC13">Reference genome for the Human Microbiome Project Oxalobacter_formigenes_OXCC13_ltp_OFBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Oxalobacter formigenes OXCC13 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002758">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002758</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:18640.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-685</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-18 23:07:39.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>18640.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:18640.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1335</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>Fecal</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004193" center_name="BI" alias="639652080318-5-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004193</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639652080318-5-S</SUBMITTER_ID>
      <UUID>d895bd8c-90cc-43f5-b013-c643dcb47342</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-686' containing sample 'Bacteroides sp. 9_1_42FAA'</TITLE>
    <STUDY_REF accession="SRP001632">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001632</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32445</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 9_1_42FAA">Reference genome for the Human Microbiome Project Bacteroides_sp_9_1_42FAA_ltp_BSBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bacteroides sp. 9_1_42FAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002759">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002759</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Bacteroides sp. 9_1_42FAA</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-686</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-18 23:07:39.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16665.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16665.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1329</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004194" center_name="BI" alias="639652080318-6-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004194</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639652080318-6-S</SUBMITTER_ID>
      <UUID>c79f801f-a0c6-417a-9a6c-438db441ef7f</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-686' containing sample 'Bacteroides sp. 9_1_42FAA'</TITLE>
    <STUDY_REF accession="SRP001632">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001632</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32445</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 9_1_42FAA">Reference genome for the Human Microbiome Project Bacteroides_sp_9_1_42FAA_ltp_BSBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bacteroides sp. 9_1_42FAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002759">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002759</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Bacteroides sp. 9_1_42FAA</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-686</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-18 23:07:39.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16665.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16665.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1329</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004195" center_name="BI" alias="639652080318-7-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004195</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639652080318-7-S</SUBMITTER_ID>
      <UUID>a0f8f8b4-865d-4cec-807c-1de9268c8787</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-687' containing sample 'BROAD:SEQUENCING_SAMPLE:16261.0'</TITLE>
    <STUDY_REF accession="SRP001621">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001621</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32491</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Helicobacter winghamensis ATCC BAA-430">Reference genome for the Human Microbiome Project Helicobacter_winghamensis_ATCC_BAA_430_ltp_HWAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Helicobacter winghamensis ATCC BAA-430 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002760">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002760</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16261.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-687</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-18 23:07:39.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16261.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16261.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1334</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004196" center_name="BI" alias="639652080318-8-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004196</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639652080318-8-S</SUBMITTER_ID>
      <UUID>00e652ea-2acb-4703-b867-8e4bae895035</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-687' containing sample 'BROAD:SEQUENCING_SAMPLE:16261.0'</TITLE>
    <STUDY_REF accession="SRP001621">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001621</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32491</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Helicobacter winghamensis ATCC BAA-430">Reference genome for the Human Microbiome Project Helicobacter_winghamensis_ATCC_BAA_430_ltp_HWAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Helicobacter winghamensis ATCC BAA-430 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002760">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002760</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16261.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-687</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-18 23:07:39.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16261.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16261.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1334</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004197" center_name="BI" alias="639652080318-11-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004197</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639652080318-11-S</SUBMITTER_ID>
      <UUID>e31f0667-33ad-4a02-8038-0b3586244f0d</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-689' containing sample 'BROAD:SEQUENCING_SAMPLE:17327.0'</TITLE>
    <STUDY_REF accession="SRP001630">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001630</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32453</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Citrobacter sp. 30_2">Reference genome for the Human Microbiome Project Citrobacter_sp_30_2_ltp_CSAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Citrobacter sp. 30_2 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002761">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002761</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17327.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-689</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-18 23:07:39.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17327.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17327.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1338</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004198" center_name="BI" alias="639652080318-12-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004198</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639652080318-12-S</SUBMITTER_ID>
      <UUID>ade9edfa-cad6-45cb-b8fa-bbac3f76032c</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-689' containing sample 'BROAD:SEQUENCING_SAMPLE:17327.0'</TITLE>
    <STUDY_REF accession="SRP001630">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001630</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32453</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Citrobacter sp. 30_2">Reference genome for the Human Microbiome Project Citrobacter_sp_30_2_ltp_CSAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Citrobacter sp. 30_2 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002761">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002761</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17327.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-689</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-18 23:07:39.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17327.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17327.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1338</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004199" center_name="BI" alias="639652080318-13-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004199</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639652080318-13-S</SUBMITTER_ID>
      <UUID>c1df69d7-7248-444c-ab5a-f1ed8e7da1d5</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-690' containing sample 'BROAD:SEQUENCING_SAMPLE:16676.0'</TITLE>
    <STUDY_REF accession="SRP001629">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001629</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32463</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Escherichia sp. 1_1_43">Reference genome for the Human Microbiome Project Escherichia_sp_1_1_43_ltp_ESCG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Escherichia sp. 1_1_43 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002762">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002762</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16676.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-690</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-18 23:07:39.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16676.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16676.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1337</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004200" center_name="BI" alias="639652080318-14-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004200</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639652080318-14-S</SUBMITTER_ID>
      <UUID>16815178-1c7f-4f5f-86a8-b666500bf9d7</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-690' containing sample 'BROAD:SEQUENCING_SAMPLE:16676.0'</TITLE>
    <STUDY_REF accession="SRP001629">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001629</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32463</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Escherichia sp. 1_1_43">Reference genome for the Human Microbiome Project Escherichia_sp_1_1_43_ltp_ESCG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Escherichia sp. 1_1_43 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002762">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002762</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16676.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-690</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-18 23:07:39.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16676.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16676.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1337</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004201" center_name="BI" alias="639652080318-15-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004201</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639652080318-15-S</SUBMITTER_ID>
      <UUID>f3799cd7-7aa1-4258-be90-27cb09c15ae4</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-691' containing sample 'BROAD:SEQUENCING_SAMPLE:18641.0'</TITLE>
    <STUDY_REF accession="SRP001628">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001628</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32497</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Oxalobacter formigenes HOxBLS">Reference genome for the Human Microbiome Project Oxalobacter_formigenes_HOxBLS_ltp_OFAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Oxalobacter formigenes HOxBLS via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002763">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002763</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:18641.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-691</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-18 23:07:39.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>18641.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:18641.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1336</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>fecal</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004202" center_name="BI" alias="639652080318-16-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004202</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639652080318-16-S</SUBMITTER_ID>
      <UUID>1f766f8c-3b52-454e-a365-1e02d1cb4dbc</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-691' containing sample 'BROAD:SEQUENCING_SAMPLE:18641.0'</TITLE>
    <STUDY_REF accession="SRP001628">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001628</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32497</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Oxalobacter formigenes HOxBLS">Reference genome for the Human Microbiome Project Oxalobacter_formigenes_HOxBLS_ltp_OFAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Oxalobacter formigenes HOxBLS via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002763">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002763</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:18641.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-691</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-18 23:07:39.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>18641.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:18641.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1336</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>fecal</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004203" center_name="BI" alias="638959080320-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004203</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">638959080320-1-S</SUBMITTER_ID>
      <UUID>40f3b37e-52cc-4b9f-b903-ae9938ea1eac</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-679' containing sample 'BROAD:SEQUENCING_SAMPLE:16260.0'</TITLE>
    <STUDY_REF accession="SRP001619">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001619</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32489</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Helicobacter bilis ATCC 43879">Reference genome for the Human Microbiome Project Helicobacter_bilis_ATCC_43879_ltp_HRAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Helicobacter bilis ATCC 43879 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002757">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002757</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16260.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-679</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-21 01:43:22.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16260.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16260.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1333</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004204" center_name="BI" alias="638959080320-2-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004204</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">638959080320-2-S</SUBMITTER_ID>
      <UUID>0ce15151-d42e-4915-9027-2299b9600b09</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-678' containing sample 'BROAD:SEQUENCING_SAMPLE:16664.0'</TITLE>
    <STUDY_REF accession="SRP001631">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001631</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32443</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 4_3_47FAA">Reference genome for the Human Microbiome Project Bacteroides_sp_4_3_47FAA_ltp_BSFG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bacteroides sp. 4_3_47FAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002756">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002756</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16664.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-678</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-21 01:43:22.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16664.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16664.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1328</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004205" center_name="BI" alias="639258080321-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004205</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639258080321-1-S</SUBMITTER_ID>
      <UUID>9e8cbf57-652f-4794-a6c1-bc96c838442b</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-685' containing sample 'BROAD:SEQUENCING_SAMPLE:18640.0'</TITLE>
    <STUDY_REF accession="SRP001623">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001623</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32499</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Oxalobacter formigenes OXCC13">Reference genome for the Human Microbiome Project Oxalobacter_formigenes_OXCC13_ltp_OFBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Oxalobacter formigenes OXCC13 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002758">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002758</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:18640.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-685</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-22 02:16:59.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>18640.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:18640.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1335</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>Fecal</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004206" center_name="BI" alias="639258080321-2-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004206</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639258080321-2-S</SUBMITTER_ID>
      <UUID>cdcc5e64-5bba-478f-aa5b-637f3161fadd</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-687' containing sample 'BROAD:SEQUENCING_SAMPLE:16261.0'</TITLE>
    <STUDY_REF accession="SRP001621">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001621</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32491</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Helicobacter winghamensis ATCC BAA-430">Reference genome for the Human Microbiome Project Helicobacter_winghamensis_ATCC_BAA_430_ltp_HWAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Helicobacter winghamensis ATCC BAA-430 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002760">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002760</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16261.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-687</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-22 02:16:59.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16261.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16261.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1334</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004207" center_name="BI" alias="639882080324-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004207</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639882080324-1-S</SUBMITTER_ID>
      <UUID>8cfc269b-7235-47cc-bb35-3f129e5dd6fc</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-686' containing sample 'Bacteroides sp. 9_1_42FAA'</TITLE>
    <STUDY_REF accession="SRP001632">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001632</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32445</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 9_1_42FAA">Reference genome for the Human Microbiome Project Bacteroides_sp_9_1_42FAA_ltp_BSBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bacteroides sp. 9_1_42FAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002759">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002759</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Bacteroides sp. 9_1_42FAA</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-686</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-25 16:30:54.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16665.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16665.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1329</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004208" center_name="BI" alias="639882080324-2-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004208</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639882080324-2-S</SUBMITTER_ID>
      <UUID>f8027a47-a9b5-444b-96a0-c67ba7ba932d</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-689' containing sample 'BROAD:SEQUENCING_SAMPLE:17327.0'</TITLE>
    <STUDY_REF accession="SRP001630">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001630</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32453</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Citrobacter sp. 30_2">Reference genome for the Human Microbiome Project Citrobacter_sp_30_2_ltp_CSAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Citrobacter sp. 30_2 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002761">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002761</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17327.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-689</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-25 16:30:54.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17327.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17327.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1338</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004209" center_name="BI" alias="639576080325-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004209</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639576080325-1-S</SUBMITTER_ID>
      <UUID>41fbbee3-43c2-46a7-98b7-6a841069a232</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-686' containing sample 'Bacteroides sp. 9_1_42FAA'</TITLE>
    <STUDY_REF accession="SRP001632">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001632</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32445</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 9_1_42FAA">Reference genome for the Human Microbiome Project Bacteroides_sp_9_1_42FAA_ltp_BSBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bacteroides sp. 9_1_42FAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002759">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002759</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Bacteroides sp. 9_1_42FAA</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-686</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-26 06:14:11.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16665.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16665.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1329</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004210" center_name="BI" alias="639576080325-2-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004210</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639576080325-2-S</SUBMITTER_ID>
      <UUID>c780dd96-1855-43c1-99a0-d0329235718e</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-690' containing sample 'BROAD:SEQUENCING_SAMPLE:16676.0'</TITLE>
    <STUDY_REF accession="SRP001629">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001629</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32463</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Escherichia sp. 1_1_43">Reference genome for the Human Microbiome Project Escherichia_sp_1_1_43_ltp_ESCG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Escherichia sp. 1_1_43 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002762">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002762</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16676.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-690</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-03-26 06:14:11.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16676.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16676.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1337</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004211" center_name="BI" alias="369605080408-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004211</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">369605080408-1-S</SUBMITTER_ID>
      <UUID>a9193973-7def-4c52-bf9c-f82b6150378e</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-685' containing sample 'BROAD:SEQUENCING_SAMPLE:18640.0'</TITLE>
    <STUDY_REF accession="SRP001623">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001623</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32499</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Oxalobacter formigenes OXCC13">Reference genome for the Human Microbiome Project Oxalobacter_formigenes_OXCC13_ltp_OFBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Oxalobacter formigenes OXCC13 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002758">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002758</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:18640.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-685</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-08 23:53:09.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>18640.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:18640.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1335</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>Fecal</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004212" center_name="BI" alias="369605080408-2-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004212</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">369605080408-2-S</SUBMITTER_ID>
      <UUID>d88b2739-e5f9-4176-b587-1f907af6a032</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-689' containing sample 'BROAD:SEQUENCING_SAMPLE:17327.0'</TITLE>
    <STUDY_REF accession="SRP001630">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001630</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32453</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Citrobacter sp. 30_2">Reference genome for the Human Microbiome Project Citrobacter_sp_30_2_ltp_CSAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Citrobacter sp. 30_2 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002761">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002761</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17327.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-689</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-08 23:53:09.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17327.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17327.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1338</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004213" center_name="BI" alias="369605080408-3-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004213</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">369605080408-3-S</SUBMITTER_ID>
      <UUID>e761d0ea-9edd-42ed-aed8-ead6fd354e03</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-690' containing sample 'BROAD:SEQUENCING_SAMPLE:16676.0'</TITLE>
    <STUDY_REF accession="SRP001629">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001629</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32463</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Escherichia sp. 1_1_43">Reference genome for the Human Microbiome Project Escherichia_sp_1_1_43_ltp_ESCG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Escherichia sp. 1_1_43 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002762">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002762</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16676.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-690</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-08 23:53:09.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16676.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16676.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1337</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004214" center_name="BI" alias="369605080408-4-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004214</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">369605080408-4-S</SUBMITTER_ID>
      <UUID>fcbc8412-0a5f-422e-ad1e-b53a40b1e504</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-691' containing sample 'BROAD:SEQUENCING_SAMPLE:18641.0'</TITLE>
    <STUDY_REF accession="SRP001628">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001628</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32497</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Oxalobacter formigenes HOxBLS">Reference genome for the Human Microbiome Project Oxalobacter_formigenes_HOxBLS_ltp_OFAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Oxalobacter formigenes HOxBLS via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002763">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002763</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:18641.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-691</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-08 23:53:09.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>18641.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:18641.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1336</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>fecal</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004215" center_name="BI" alias="638638080411-1-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004215</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">638638080411-1-P</SUBMITTER_ID>
      <UUID>127b315e-771e-4df7-9ac9-f4ab64fdfa4b</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-694' containing sample 'BROAD:SEQUENCING_SAMPLE:16662.0'</TITLE>
    <STUDY_REF accession="SRP001627">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001627</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32441</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 3_2_5">Reference genome for the Human Microbiome Project Bacteroides_sp_3_2_5_ltp_BSHG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bacteroides sp. 3_2_5 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002753">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002753</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16662.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-694</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="350"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-15 12:03:38.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16662.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16662.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1327</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004216" center_name="BI" alias="638638080411-2-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004216</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">638638080411-2-P</SUBMITTER_ID>
      <UUID>1115f370-e98a-473d-8113-e4a9e61ff71b</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-695' containing sample 'BROAD:SEQUENCING_SAMPLE:16669.0'</TITLE>
    <STUDY_REF accession="SRP001615">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001615</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32457</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Clostridium sp. 7_2_43FAA">Reference genome for the Human Microbiome Project Clostridium_sp_7_2_43FAA_ltp_CSBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Clostridium sp. 7_2_43FAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002752">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002752</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16669.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-695</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="350"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-15 12:03:38.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16669.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16669.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1330</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004217" center_name="BI" alias="639633080415-3-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004217</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639633080415-3-P</SUBMITTER_ID>
      <UUID>ba7a2943-2ddd-4b0c-a6d6-7d09ead75c0b</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-698' containing sample 'Fusobacterium sp. 12_1B'</TITLE>
    <STUDY_REF accession="SRP001624">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001624</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32471</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium ulcerans 12-1B">Reference genome for the Human Microbiome Project Fusobacterium_ulcerans_12_1B_12_1B_ltp_HMPREF0402_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Fusobacterium ulcerans 12-1B via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS107454">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS107454</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 12_1B</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-698</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="501"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-16 00:09:34.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16680.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16680.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1331</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004218" center_name="BI" alias="639633080415-4-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004218</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639633080415-4-P</SUBMITTER_ID>
      <UUID>b94a1a38-6ca0-4d28-af25-4c5d7a25641f</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-698' containing sample 'Fusobacterium sp. 12_1B'</TITLE>
    <STUDY_REF accession="SRP001624">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001624</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32471</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium ulcerans 12-1B">Reference genome for the Human Microbiome Project Fusobacterium_ulcerans_12_1B_12_1B_ltp_HMPREF0402_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Fusobacterium ulcerans 12-1B via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS107454">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS107454</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 12_1B</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-698</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="501"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-16 00:09:34.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16680.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16680.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1331</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004219" center_name="BI" alias="639633080415-9-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004219</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639633080415-9-P</SUBMITTER_ID>
      <UUID>77659e6d-5e37-41d9-ab3f-309a609b2127</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1020' containing sample 'Bacteroides sp. 9_1_42FAA'</TITLE>
    <STUDY_REF accession="SRP001632">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001632</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32445</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 9_1_42FAA">Reference genome for the Human Microbiome Project Bacteroides_sp_9_1_42FAA_ltp_BSBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bacteroides sp. 9_1_42FAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002759">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002759</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Bacteroides sp. 9_1_42FAA</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1020</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="431"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-16 00:09:34.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16665.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16665.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1329</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004220" center_name="BI" alias="639633080415-10-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004220</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639633080415-10-P</SUBMITTER_ID>
      <UUID>c11efb31-d43c-4830-92b5-bfd85578b406</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1020' containing sample 'Bacteroides sp. 9_1_42FAA'</TITLE>
    <STUDY_REF accession="SRP001632">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001632</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32445</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 9_1_42FAA">Reference genome for the Human Microbiome Project Bacteroides_sp_9_1_42FAA_ltp_BSBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bacteroides sp. 9_1_42FAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002759">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002759</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Bacteroides sp. 9_1_42FAA</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1020</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="431"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-16 00:09:34.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16665.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16665.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1329</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004221" center_name="BI" alias="639633080415-11-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004221</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639633080415-11-P</SUBMITTER_ID>
      <UUID>088e5759-f9fd-485f-b096-1f32c3a74076</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1021' containing sample 'BROAD:SEQUENCING_SAMPLE:16688.0'</TITLE>
    <STUDY_REF accession="SRP001626">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001626</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32503</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Ruminococcus sp. 5_1_39BFAA">Reference genome for the Human Microbiome Project Ruminococcus_sp_5_1_39BFAA_ltp_RSAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Ruminococcus sp. 5_1_39BFAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002755">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002755</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16688.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1021</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="435"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-16 00:09:34.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16688.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16688.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1332</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004222" center_name="BI" alias="639633080415-12-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004222</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639633080415-12-P</SUBMITTER_ID>
      <UUID>4db0de0a-0a5a-4355-9c86-decc1ee4ddd4</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1021' containing sample 'BROAD:SEQUENCING_SAMPLE:16688.0'</TITLE>
    <STUDY_REF accession="SRP001626">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001626</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32503</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Ruminococcus sp. 5_1_39BFAA">Reference genome for the Human Microbiome Project Ruminococcus_sp_5_1_39BFAA_ltp_RSAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Ruminococcus sp. 5_1_39BFAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002755">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002755</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16688.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1021</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="435"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-16 00:09:34.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16688.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16688.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1332</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004223" center_name="BI" alias="639633080415-13-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004223</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639633080415-13-P</SUBMITTER_ID>
      <UUID>232d752a-4d77-4c50-b2c4-c80669a1c7c2</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1022' containing sample 'BROAD:SEQUENCING_SAMPLE:16260.0'</TITLE>
    <STUDY_REF accession="SRP001619">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001619</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32489</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Helicobacter bilis ATCC 43879">Reference genome for the Human Microbiome Project Helicobacter_bilis_ATCC_43879_ltp_HRAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Helicobacter bilis ATCC 43879 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002757">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002757</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16260.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1022</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="468"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-16 00:09:34.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16260.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16260.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1333</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004224" center_name="BI" alias="639633080415-14-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004224</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639633080415-14-P</SUBMITTER_ID>
      <UUID>a85970ea-14d1-4bb3-bc88-2965609128d6</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1022' containing sample 'BROAD:SEQUENCING_SAMPLE:16260.0'</TITLE>
    <STUDY_REF accession="SRP001619">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001619</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32489</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Helicobacter bilis ATCC 43879">Reference genome for the Human Microbiome Project Helicobacter_bilis_ATCC_43879_ltp_HRAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Helicobacter bilis ATCC 43879 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002757">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002757</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16260.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1022</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="468"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-16 00:09:34.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16260.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16260.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1333</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004225" center_name="BI" alias="639633080415-15-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004225</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639633080415-15-P</SUBMITTER_ID>
      <UUID>060f49ca-9fd9-482d-8961-44648d2c1062</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1023' containing sample 'BROAD:SEQUENCING_SAMPLE:18641.0'</TITLE>
    <STUDY_REF accession="SRP001628">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001628</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32497</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Oxalobacter formigenes HOxBLS">Reference genome for the Human Microbiome Project Oxalobacter_formigenes_HOxBLS_ltp_OFAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Oxalobacter formigenes HOxBLS via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002763">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002763</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:18641.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1023</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="382"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-16 00:09:34.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>18641.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:18641.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1336</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>fecal</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004226" center_name="BI" alias="639633080415-16-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004226</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639633080415-16-P</SUBMITTER_ID>
      <UUID>74b810a9-6b23-495e-876d-d042d900751e</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1023' containing sample 'BROAD:SEQUENCING_SAMPLE:18641.0'</TITLE>
    <STUDY_REF accession="SRP001628">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001628</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32497</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Oxalobacter formigenes HOxBLS">Reference genome for the Human Microbiome Project Oxalobacter_formigenes_HOxBLS_ltp_OFAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Oxalobacter formigenes HOxBLS via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002763">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002763</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:18641.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1023</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="382"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-16 00:09:34.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>18641.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:18641.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1336</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>fecal</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004227" center_name="BI" alias="639604080417-15-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004227</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639604080417-15-P</SUBMITTER_ID>
      <UUID>aab64e96-d43f-4e42-91ff-24041854342b</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-697' containing sample 'BROAD:SEQUENCING_SAMPLE:16664.0'</TITLE>
    <STUDY_REF accession="SRP001631">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001631</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32443</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 4_3_47FAA">Reference genome for the Human Microbiome Project Bacteroides_sp_4_3_47FAA_ltp_BSFG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bacteroides sp. 4_3_47FAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002756">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002756</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16664.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-697</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="445"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-17 23:53:35.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16664.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16664.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1328</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004228" center_name="BI" alias="643295080506-15-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004228</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">643295080506-15-S</SUBMITTER_ID>
      <UUID>c3e323cf-f07a-4f31-aec7-43a2ad12eba0</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1099' containing sample 'BROAD:SEQUENCING_SAMPLE:22682.0'</TITLE>
    <STUDY_REF accession="SRP001666">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001666</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32461</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Coprobacillus sp. D6">Reference genome for the Human Microbiome Project Coprobacillus_sp_D6_ltp_HMPREF0273_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002764">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002764</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22682.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1099</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-06-09 17:44:53.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22682.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22682.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1424</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16660</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004229" center_name="BI" alias="643295080506-16-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004229</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">643295080506-16-S</SUBMITTER_ID>
      <UUID>2461aa2c-e87e-4c0b-89be-0231e8919f95</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1100' containing sample 'BROAD:SEQUENCING_SAMPLE:17337.0'</TITLE>
    <STUDY_REF accession="SRP001672">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001672</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32469</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium periodonticum 1_1_41FAA">Reference genome for the Human Microbiome Project Fusobacterium_periodonticum_1_1_41FAA_ltp_HMPREF0400_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002765">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002765</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17337.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1100</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-06-09 17:44:53.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17337.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17337.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1427</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16666</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004230" center_name="BI" alias="642044080506-5-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004230</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642044080506-5-S</SUBMITTER_ID>
      <UUID>666ad14d-39e9-4c1d-9a1c-2a9844c554fb</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1087' containing sample 'BROAD:SEQUENCING_SAMPLE:16658.0'</TITLE>
    <STUDY_REF accession="SRP001667">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001667</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32437</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 2_1_7">Reference genome for the Human Microbiome Project Bacteroides_sp_2_1_7_ltp_BSDG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002766">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002766</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16658.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1087</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-06 10:34:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16658.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16658.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1423</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16658</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004231" center_name="BI" alias="642044080506-6-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004231</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642044080506-6-S</SUBMITTER_ID>
      <UUID>3c0aab42-38ad-4b81-b48d-a53c44059db6</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1087' containing sample 'BROAD:SEQUENCING_SAMPLE:16658.0'</TITLE>
    <STUDY_REF accession="SRP001667">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001667</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32437</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 2_1_7">Reference genome for the Human Microbiome Project Bacteroides_sp_2_1_7_ltp_BSDG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002766">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002766</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16658.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1087</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-06 10:34:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16658.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16658.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1423</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16658</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004232" center_name="BI" alias="642044080506-7-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004232</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642044080506-7-P</SUBMITTER_ID>
      <UUID>772b02a6-7e32-46a0-8365-7f0dee6c05f1</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1091' containing sample 'BROAD:SEQUENCING_SAMPLE:18640.0'</TITLE>
    <STUDY_REF accession="SRP001623">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001623</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32499</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Oxalobacter formigenes OXCC13">Reference genome for the Human Microbiome Project Oxalobacter_formigenes_OXCC13_ltp_OFBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002758">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002758</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:18640.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1091</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="366"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-06 10:34:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>18640.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:18640.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1335</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>Fecal</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16516</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004233" center_name="BI" alias="642044080506-8-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004233</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642044080506-8-P</SUBMITTER_ID>
      <UUID>6b4525fa-6a33-47d9-83be-026f7e45b124</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1091' containing sample 'BROAD:SEQUENCING_SAMPLE:18640.0'</TITLE>
    <STUDY_REF accession="SRP001623">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001623</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32499</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Oxalobacter formigenes OXCC13">Reference genome for the Human Microbiome Project Oxalobacter_formigenes_OXCC13_ltp_OFBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002758">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002758</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:18640.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1091</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="366"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-06 10:34:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>18640.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:18640.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1335</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>Fecal</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16516</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004234" center_name="BI" alias="642044080506-11-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004234</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642044080506-11-P</SUBMITTER_ID>
      <UUID>2044d8d3-0faa-40c2-9f08-498aa182bcb7</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1104' containing sample 'BROAD:SEQUENCING_SAMPLE:17327.0'</TITLE>
    <STUDY_REF accession="SRP001630">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001630</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32453</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Citrobacter sp. 30_2">Reference genome for the Human Microbiome Project Citrobacter_sp_30_2_ltp_CSAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002761">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002761</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17327.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1104</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="350"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-06 10:34:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17327.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17327.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1338</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16546</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004235" center_name="BI" alias="642044080506-12-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004235</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642044080506-12-P</SUBMITTER_ID>
      <UUID>d2e96358-9bc2-437c-af91-93f692cd8fec</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1104' containing sample 'BROAD:SEQUENCING_SAMPLE:17327.0'</TITLE>
    <STUDY_REF accession="SRP001630">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001630</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32453</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Citrobacter sp. 30_2">Reference genome for the Human Microbiome Project Citrobacter_sp_30_2_ltp_CSAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002761">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002761</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17327.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1104</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="350"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-06 10:34:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17327.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17327.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1338</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16546</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004236" center_name="BI" alias="642044080506-13-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004236</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642044080506-13-P</SUBMITTER_ID>
      <UUID>f4ccabf9-eaaf-4615-b35f-a6b5a3b082b9</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1103' containing sample 'BROAD:SEQUENCING_SAMPLE:22675.0'</TITLE>
    <STUDY_REF accession="SRP001683">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001683</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32447</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. D1">Reference genome for the Human Microbiome Project Bacteroides_sp_D1_ltp_BSAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002767">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002767</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22675.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1103</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="382"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-06 10:34:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22675.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22675.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1414</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16628</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004237" center_name="BI" alias="642044080506-14-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004237</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642044080506-14-P</SUBMITTER_ID>
      <UUID>355003ad-ce98-4c36-8e6c-815c2eeaa07a</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1103' containing sample 'BROAD:SEQUENCING_SAMPLE:22675.0'</TITLE>
    <STUDY_REF accession="SRP001683">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001683</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32447</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. D1">Reference genome for the Human Microbiome Project Bacteroides_sp_D1_ltp_BSAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002767">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002767</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22675.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1103</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="382"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-06 10:34:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22675.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22675.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1414</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16628</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004238" center_name="BI" alias="642044080506-15-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004238</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642044080506-15-S</SUBMITTER_ID>
      <UUID>252d37cf-5262-4716-b2fc-73cfc2c29b3e</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1088' containing sample 'BROAD:SEQUENCING_SAMPLE:17336.0'</TITLE>
    <STUDY_REF accession="SRP001668">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001668</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32421</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium mortiferum ATCC 9817">This strain will be used for comparative genome analysis Fusobacterium_mortiferum_ATCC_9817_ltp_FMAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002768">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002768</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17336.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1088</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-06 10:34:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17336.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17336.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1426</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16664</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004239" center_name="BI" alias="643281080507-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004239</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">643281080507-1-S</SUBMITTER_ID>
      <UUID>f48dd514-d94b-485a-8e1e-4a08b48c4820</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1062' containing sample 'BROAD:SEQUENCING_SAMPLE:22681.0'</TITLE>
    <STUDY_REF accession="SRP001685">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001685</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32459</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Clostridium sp. D5">Reference genome for the Human Microbiome Project Clostridium_sp_D5_ltp_HMPREF0240_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002769">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002769</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22681.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1062</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-08-05 18:50:27.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22681.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22681.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1417</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16647</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004240" center_name="BI" alias="641914080508-2-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004240</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641914080508-2-S</SUBMITTER_ID>
      <UUID>9e2c1a4c-758d-455d-bcd3-3dc51b949fee</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1088' containing sample 'BROAD:SEQUENCING_SAMPLE:17336.0'</TITLE>
    <STUDY_REF accession="SRP001668">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001668</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32421</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium mortiferum ATCC 9817">This strain will be used for comparative genome analysis Fusobacterium_mortiferum_ATCC_9817_ltp_FMAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002768">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002768</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17336.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1088</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-08 22:40:45.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17336.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17336.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1426</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16664</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004241" center_name="BI" alias="643172080509-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004241</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">643172080509-1-S</SUBMITTER_ID>
      <UUID>794efca0-9035-46c9-860e-ff50893f3650</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1063' containing sample 'BROAD:SEQUENCING_SAMPLE:22678.0'</TITLE>
    <STUDY_REF accession="SRP001686">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001686</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32451</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides dorei 5_1_36/D4">Reference genome for the Human Microbiome Project Bacteroides_dorei_5_1_36_D4_ltp_BSEG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002770">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002770</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22678.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1063</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-09 20:11:48.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22678.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22678.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1416</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16645</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004242" center_name="BI" alias="643172080509-2-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004242</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">643172080509-2-S</SUBMITTER_ID>
      <UUID>0c493a82-79eb-4cfc-acd0-59d03c76a46b</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1063' containing sample 'BROAD:SEQUENCING_SAMPLE:22678.0'</TITLE>
    <STUDY_REF accession="SRP001686">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001686</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32451</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides dorei 5_1_36/D4">Reference genome for the Human Microbiome Project Bacteroides_dorei_5_1_36_D4_ltp_BSEG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002770">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002770</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22678.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1063</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-09 20:11:48.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22678.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22678.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1416</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16645</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004243" center_name="BI" alias="643172080509-4-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004243</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">643172080509-4-S</SUBMITTER_ID>
      <UUID>958ee809-ed30-4084-a797-52ce37e4bc6f</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1064' containing sample 'BROAD:SEQUENCING_SAMPLE:22684.0'</TITLE>
    <STUDY_REF accession="SRP001684">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001684</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32485</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium necrophorum D12">Reference genome for the Human Microbiome Project Fusobacterium_necrophorum_D12_ltp_FSEG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002771">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002771</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22684.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1064</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-09 20:11:48.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22684.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22684.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1418</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16649</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004244" center_name="BI" alias="643172080509-5-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004244</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">643172080509-5-S</SUBMITTER_ID>
      <UUID>bd47f0e5-2601-4d5a-9acf-efe8ed94cd35</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1107' containing sample 'BROAD:SEQUENCING_SAMPLE:16677.0'</TITLE>
    <STUDY_REF accession="SRP001669">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001669</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32467</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Escherichia sp. 4_1_40B">Reference genome for the Human Microbiome Project Escherichia_sp_4_1_40B_ltp_ESBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002772">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002772</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16677.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1107</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-09 20:11:48.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16677.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16677.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1425</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16662</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004245" center_name="BI" alias="643172080509-6-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004245</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">643172080509-6-S</SUBMITTER_ID>
      <UUID>b8f41d7d-506c-4b9a-bb87-da9da4673f14</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1107' containing sample 'BROAD:SEQUENCING_SAMPLE:16677.0'</TITLE>
    <STUDY_REF accession="SRP001669">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001669</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32467</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Escherichia sp. 4_1_40B">Reference genome for the Human Microbiome Project Escherichia_sp_4_1_40B_ltp_ESBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002772">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002772</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16677.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1107</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-09 20:11:48.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16677.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16677.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1425</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16662</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004246" center_name="BI" alias="643172080509-7-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004246</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">643172080509-7-S</SUBMITTER_ID>
      <UUID>f425831f-38f8-4c70-aa89-db79854f31ec</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1108' containing sample 'Fusobacterium sp. 2_1_31'</TITLE>
    <STUDY_REF accession="SRP001671">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001671</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32473</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium periodonticum 2_1_31">Reference genome for the Human Microbiome Project Fusobacterium_periodonticum_2_1_31_ltp_FSAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002773">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002773</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 2_1_31</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1108</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-09 20:11:48.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17338.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17338.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1428</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16668</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004247" center_name="BI" alias="643172080509-8-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004247</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">643172080509-8-S</SUBMITTER_ID>
      <UUID>84e3219a-b337-438f-b110-0450902fa7f5</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1108' containing sample 'Fusobacterium sp. 2_1_31'</TITLE>
    <STUDY_REF accession="SRP001671">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001671</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32473</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium periodonticum 2_1_31">Reference genome for the Human Microbiome Project Fusobacterium_periodonticum_2_1_31_ltp_FSAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002773">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002773</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 2_1_31</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1108</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-09 20:11:48.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17338.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17338.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1428</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16668</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004248" center_name="BI" alias="641736080509-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004248</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641736080509-1-S</SUBMITTER_ID>
      <UUID>fab140e5-2932-4dcf-a792-a1e0a1159867</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1087' containing sample 'BROAD:SEQUENCING_SAMPLE:16658.0'</TITLE>
    <STUDY_REF accession="SRP001667">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001667</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32437</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 2_1_7">Reference genome for the Human Microbiome Project Bacteroides_sp_2_1_7_ltp_BSDG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002766">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002766</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16658.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1087</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-09 20:39:01.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16658.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16658.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1423</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16658</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004249" center_name="BI" alias="642688080424-1-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004249</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642688080424-1-P</SUBMITTER_ID>
      <UUID>52ee6c28-5469-4959-8d8a-c0f159077005</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1020' containing sample 'Bacteroides sp. 9_1_42FAA'</TITLE>
    <STUDY_REF accession="SRP001632">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001632</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32445</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 9_1_42FAA">Reference genome for the Human Microbiome Project Bacteroides_sp_9_1_42FAA_ltp_BSBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bacteroides sp. 9_1_42FAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002759">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002759</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Bacteroides sp. 9_1_42FAA</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1020</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="431"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-08-15 12:57:01.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16665.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16665.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1329</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004250" center_name="BI" alias="642688080424-2-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004250</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642688080424-2-P</SUBMITTER_ID>
      <UUID>5c71b9c7-3d87-4d06-9bee-741872d8ce79</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1023' containing sample 'BROAD:SEQUENCING_SAMPLE:18641.0'</TITLE>
    <STUDY_REF accession="SRP001628">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001628</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32497</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Oxalobacter formigenes HOxBLS">Reference genome for the Human Microbiome Project Oxalobacter_formigenes_HOxBLS_ltp_OFAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Oxalobacter formigenes HOxBLS via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002763">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002763</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:18641.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1023</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="382"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-08-15 12:57:01.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>18641.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:18641.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1336</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>fecal</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004251" center_name="BI" alias="639273080425-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004251</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639273080425-1-S</SUBMITTER_ID>
      <UUID>5d40e6b7-e805-4677-acad-1a4ba7aa888f</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-685' containing sample 'BROAD:SEQUENCING_SAMPLE:18640.0'</TITLE>
    <STUDY_REF accession="SRP001623">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001623</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32499</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Oxalobacter formigenes OXCC13">Reference genome for the Human Microbiome Project Oxalobacter_formigenes_OXCC13_ltp_OFBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Oxalobacter formigenes OXCC13 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002758">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002758</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:18640.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-685</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-25 23:39:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>18640.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:18640.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1335</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>Fecal</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004252" center_name="BI" alias="639273080425-2-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004252</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639273080425-2-P</SUBMITTER_ID>
      <UUID>55524806-c9e1-43af-9cc3-426771825ab1</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-698' containing sample 'Fusobacterium sp. 12_1B'</TITLE>
    <STUDY_REF accession="SRP001624">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001624</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32471</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium ulcerans 12-1B">Reference genome for the Human Microbiome Project Fusobacterium_ulcerans_12_1B_12_1B_ltp_HMPREF0402_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Fusobacterium ulcerans 12-1B via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS107454">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS107454</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 12_1B</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-698</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="501"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-25 23:39:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16680.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16680.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1331</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004253" center_name="BI" alias="639273080425-3-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004253</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639273080425-3-P</SUBMITTER_ID>
      <UUID>6980ec39-9404-44a5-98c6-1ec556eb274e</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1021' containing sample 'BROAD:SEQUENCING_SAMPLE:16688.0'</TITLE>
    <STUDY_REF accession="SRP001626">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001626</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32503</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Ruminococcus sp. 5_1_39BFAA">Reference genome for the Human Microbiome Project Ruminococcus_sp_5_1_39BFAA_ltp_RSAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Ruminococcus sp. 5_1_39BFAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002755">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002755</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16688.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1021</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="435"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-25 23:39:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16688.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16688.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1332</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004254" center_name="BI" alias="639273080425-4-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004254</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">639273080425-4-P</SUBMITTER_ID>
      <UUID>c5825fe0-af2b-44a1-a44a-7b476d74fe24</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1022' containing sample 'BROAD:SEQUENCING_SAMPLE:16260.0'</TITLE>
    <STUDY_REF accession="SRP001619">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001619</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32489</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Helicobacter bilis ATCC 43879">Reference genome for the Human Microbiome Project Helicobacter_bilis_ATCC_43879_ltp_HRAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Helicobacter bilis ATCC 43879 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002757">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002757</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16260.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1022</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="468"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-04-25 23:39:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16260.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16260.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1333</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004255" center_name="BI" alias="642670080425-1-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004255</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642670080425-1-P</SUBMITTER_ID>
      <UUID>fff3e2fc-9b65-471c-aecb-1c99278a4176</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-697' containing sample 'BROAD:SEQUENCING_SAMPLE:16664.0'</TITLE>
    <STUDY_REF accession="SRP001631">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001631</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32443</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 4_3_47FAA">Reference genome for the Human Microbiome Project Bacteroides_sp_4_3_47FAA_ltp_BSFG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bacteroides sp. 4_3_47FAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002756">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002756</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16664.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-697</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="445"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-13 23:15:48.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16664.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16664.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1328</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004256" center_name="BI" alias="642109080429-9-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004256</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642109080429-9-S</SUBMITTER_ID>
      <UUID>3bc9f35d-2aec-448c-b074-ec9d994a88b6</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1060' containing sample 'BROAD:SEQUENCING_SAMPLE:22676.0'</TITLE>
    <STUDY_REF accession="SRP001682">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001682</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32449</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. D2">Reference genome for the Human Microbiome Project Bacteroides_sp_D2_ltp_BSGG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002774">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002774</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22676.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1060</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-07-01 15:18:10.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22676.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22676.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1415</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16643</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004257" center_name="BI" alias="642109080429-10-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004257</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642109080429-10-S</SUBMITTER_ID>
      <UUID>abb82674-64be-4555-bc7e-c48d78560e10</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1060' containing sample 'BROAD:SEQUENCING_SAMPLE:22676.0'</TITLE>
    <STUDY_REF accession="SRP001682">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001682</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32449</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. D2">Reference genome for the Human Microbiome Project Bacteroides_sp_D2_ltp_BSGG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002774">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002774</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22676.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1060</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-07-01 15:18:10.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22676.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22676.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1415</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16643</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004258" center_name="BI" alias="642109080429-11-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004258</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642109080429-11-S</SUBMITTER_ID>
      <UUID>ffa5b029-ea67-4274-83cc-9bb2a0ab682f</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1062' containing sample 'BROAD:SEQUENCING_SAMPLE:22681.0'</TITLE>
    <STUDY_REF accession="SRP001685">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001685</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32459</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Clostridium sp. D5">Reference genome for the Human Microbiome Project Clostridium_sp_D5_ltp_HMPREF0240_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002769">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002769</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22681.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1062</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-07-01 15:18:10.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22681.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22681.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1417</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16647</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004259" center_name="BI" alias="642109080429-12-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004259</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642109080429-12-S</SUBMITTER_ID>
      <UUID>5f67e27d-7e84-45d5-80d4-91957a9d43e6</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1062' containing sample 'BROAD:SEQUENCING_SAMPLE:22681.0'</TITLE>
    <STUDY_REF accession="SRP001685">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001685</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32459</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Clostridium sp. D5">Reference genome for the Human Microbiome Project Clostridium_sp_D5_ltp_HMPREF0240_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002769">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002769</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22681.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1062</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-07-01 15:18:10.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22681.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22681.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1417</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16647</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004260" center_name="BI" alias="642109080429-13-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004260</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642109080429-13-P</SUBMITTER_ID>
      <UUID>cc7b9a18-fa38-4845-a064-aea032e5255c</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1083' containing sample 'BROAD:SEQUENCING_SAMPLE:16676.0'</TITLE>
    <STUDY_REF accession="SRP001629">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001629</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32463</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Escherichia sp. 1_1_43">Reference genome for the Human Microbiome Project Escherichia_sp_1_1_43_ltp_ESCG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002762">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002762</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16676.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1083</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="343"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-07-01 15:18:10.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16676.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16676.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1337</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16544</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004261" center_name="BI" alias="642109080429-14-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004261</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642109080429-14-P</SUBMITTER_ID>
      <UUID>0d09acd6-52c0-432f-aafc-bb7044132d8b</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1083' containing sample 'BROAD:SEQUENCING_SAMPLE:16676.0'</TITLE>
    <STUDY_REF accession="SRP001629">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001629</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32463</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Escherichia sp. 1_1_43">Reference genome for the Human Microbiome Project Escherichia_sp_1_1_43_ltp_ESCG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002762">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002762</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16676.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1083</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="343"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-07-01 15:18:10.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16676.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16676.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1337</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16544</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004262" center_name="BI" alias="642109080429-15-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004262</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642109080429-15-P</SUBMITTER_ID>
      <UUID>3920d3b4-cff8-443c-9b17-a48e7bf5cb91</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1084' containing sample 'BROAD:SEQUENCING_SAMPLE:16261.0'</TITLE>
    <STUDY_REF accession="SRP001621">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001621</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32491</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Helicobacter winghamensis ATCC BAA-430">Reference genome for the Human Microbiome Project Helicobacter_winghamensis_ATCC_BAA_430_ltp_HWAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002760">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002760</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16261.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1084</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="396"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-07-01 15:18:10.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16261.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16261.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1334</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16472</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004263" center_name="BI" alias="642109080429-16-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004263</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642109080429-16-P</SUBMITTER_ID>
      <UUID>a648d1a7-7cf1-439a-b1dd-4bea11948948</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1084' containing sample 'BROAD:SEQUENCING_SAMPLE:16261.0'</TITLE>
    <STUDY_REF accession="SRP001621">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001621</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32491</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Helicobacter winghamensis ATCC BAA-430">Reference genome for the Human Microbiome Project Helicobacter_winghamensis_ATCC_BAA_430_ltp_HWAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002760">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002760</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16261.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1084</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="396"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-07-01 15:18:10.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16261.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16261.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1334</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16472</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004264" center_name="BI" alias="643166080502-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004264</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">643166080502-1-S</SUBMITTER_ID>
      <UUID>7c9fc9cc-d5a5-4a2a-8fa3-2189798fa5a0</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1062' containing sample 'BROAD:SEQUENCING_SAMPLE:22681.0'</TITLE>
    <STUDY_REF accession="SRP001685">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001685</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32459</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Clostridium sp. D5">Reference genome for the Human Microbiome Project Clostridium_sp_D5_ltp_HMPREF0240_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002769">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002769</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22681.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1062</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-08 09:05:49.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22681.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22681.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1417</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16647</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004265" center_name="BI" alias="643166080502-2-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004265</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">643166080502-2-P</SUBMITTER_ID>
      <UUID>79527a62-97a3-46ce-9389-0441cd98134c</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1084' containing sample 'BROAD:SEQUENCING_SAMPLE:16261.0'</TITLE>
    <STUDY_REF accession="SRP001621">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001621</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32491</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Helicobacter winghamensis ATCC BAA-430">Reference genome for the Human Microbiome Project Helicobacter_winghamensis_ATCC_BAA_430_ltp_HWAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002760">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002760</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16261.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1084</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="396"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-08 09:05:49.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16261.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16261.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1334</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16472</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004266" center_name="BI" alias="643138080527-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004266</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">643138080527-1-S</SUBMITTER_ID>
      <UUID>dcbd0737-53f1-4b1d-840f-8faa4a6f0147</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1145' containing sample 'BROAD:SEQUENCING_SAMPLE:22693.0'</TITLE>
    <STUDY_REF accession="SRP001675">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001675</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32501</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis D11">Reference genome for the Human Microbiome Project Fusobacterium_nucleatum_subsp_animalis_D11_ltp_PSAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002775">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002775</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22693.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1145</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-09-26 12:02:53.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22693.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22693.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1433</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16686</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004267" center_name="BI" alias="643138080527-2-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004267</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">643138080527-2-S</SUBMITTER_ID>
      <UUID>d9603595-925c-4dd6-882a-427276d87c5d</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1146' containing sample 'BROAD:SEQUENCING_SAMPLE:22695.0'</TITLE>
    <STUDY_REF accession="SRP001673">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001673</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32507</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Shigella sp. D9">Reference genome for the Human Microbiome Project Shigella_sp_D9_ltp_SSJG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002776">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002776</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22695.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1146</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-09-26 12:02:53.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22695.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22695.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1435</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16690</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004268" center_name="BI" alias="642369080527-1-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004268</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642369080527-1-P</SUBMITTER_ID>
      <UUID>bf5a2615-009a-41cb-8454-9ad54d46f74b</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1121' containing sample 'BROAD:SEQUENCING_SAMPLE:22676.0'</TITLE>
    <STUDY_REF accession="SRP001682">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001682</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32449</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. D2">Reference genome for the Human Microbiome Project Bacteroides_sp_D2_ltp_BSGG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002774">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002774</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22676.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1121</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="363"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-27 23:10:52.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22676.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22676.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1415</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16644</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004269" center_name="BI" alias="642369080527-2-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004269</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642369080527-2-S</SUBMITTER_ID>
      <UUID>04f433a3-4657-4a43-9ea0-a9614fede288</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1134' containing sample 'BROAD:SEQUENCING_SAMPLE:17348.0'</TITLE>
    <STUDY_REF accession="SRP001677">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001677</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32423</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium varium ATCC 27725">This strain will be used for comparative genome analysis Fusobacterium_varium_ATCC_27725_ltp_FVAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002777">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002777</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17348.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1134</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-27 23:10:52.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17348.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17348.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1431</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16672</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004270" center_name="BI" alias="641370080529-2-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004270</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641370080529-2-P</SUBMITTER_ID>
      <UUID>556124e2-fbc9-4a01-a1bb-edd9b298a490</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1154' containing sample 'BROAD:SEQUENCING_SAMPLE:22678.0'</TITLE>
    <STUDY_REF accession="SRP001686">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001686</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32451</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides dorei 5_1_36/D4">Reference genome for the Human Microbiome Project Bacteroides_dorei_5_1_36_D4_ltp_BSEG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002770">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002770</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22678.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1154</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="440"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-09 16:41:40.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22678.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22678.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1416</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16646</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004271" center_name="BI" alias="642286080530-1-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004271</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642286080530-1-P</SUBMITTER_ID>
      <UUID>493771e2-616d-4a73-8d34-7490d16bedd4</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1166' containing sample 'BROAD:SEQUENCING_SAMPLE:16658.0'</TITLE>
    <STUDY_REF accession="SRP001667">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001667</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32437</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 2_1_7">Reference genome for the Human Microbiome Project Bacteroides_sp_2_1_7_ltp_BSDG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002766">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002766</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16658.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1166</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="479"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-02 10:45:01.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16658.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16658.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1423</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16659</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004272" center_name="BI" alias="642286080530-2-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004272</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642286080530-2-P</SUBMITTER_ID>
      <UUID>db1dcf5b-6e0f-45ae-86eb-b1c069bc93c2</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1174' containing sample 'BROAD:SEQUENCING_SAMPLE:17347.0'</TITLE>
    <STUDY_REF accession="SRP001678">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001678</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32487</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium ulcerans ATCC 49185">Reference genome for the Human Microbiome Project Fusobacterium_ulcerans_ATCC_49185_ltp_FUAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002778">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002778</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17347.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1174</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="437"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-02 10:45:01.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17347.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17347.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1430</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16671</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004273" center_name="BI" alias="641837080512-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004273</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641837080512-1-S</SUBMITTER_ID>
      <UUID>39047598-b25d-4324-a233-3681fec25792</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-675' containing sample 'BROAD:SEQUENCING_SAMPLE:16662.0'</TITLE>
    <STUDY_REF accession="SRP001627">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001627</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32441</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 3_2_5">Reference genome for the Human Microbiome Project Bacteroides_sp_3_2_5_ltp_BSHG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bacteroides sp. 3_2_5 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002753">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002753</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16662.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-675</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-14 10:32:18.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16662.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16662.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1327</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004274" center_name="BI" alias="641837080512-2-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004274</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641837080512-2-S</SUBMITTER_ID>
      <UUID>8d089b39-1c6c-4d01-91bd-43960d6f1a05</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-691' containing sample 'BROAD:SEQUENCING_SAMPLE:18641.0'</TITLE>
    <STUDY_REF accession="SRP001628">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001628</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32497</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Oxalobacter formigenes HOxBLS">Reference genome for the Human Microbiome Project Oxalobacter_formigenes_HOxBLS_ltp_OFAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Oxalobacter formigenes HOxBLS via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002763">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002763</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:18641.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-691</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-14 10:32:18.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>18641.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:18641.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1336</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>fecal</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004275" center_name="BI" alias="642479080512-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004275</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642479080512-1-S</SUBMITTER_ID>
      <UUID>56fdec49-4e77-472f-b9d1-b13584a1a23d</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1087' containing sample 'BROAD:SEQUENCING_SAMPLE:16658.0'</TITLE>
    <STUDY_REF accession="SRP001667">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001667</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32437</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 2_1_7">Reference genome for the Human Microbiome Project Bacteroides_sp_2_1_7_ltp_BSDG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002766">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002766</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16658.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1087</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-13 17:46:17.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16658.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16658.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1423</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16658</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004276" center_name="BI" alias="642479080512-2-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004276</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642479080512-2-P</SUBMITTER_ID>
      <UUID>2d5139e8-169a-4e29-beda-9dd7c1408b69</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1091' containing sample 'BROAD:SEQUENCING_SAMPLE:18640.0'</TITLE>
    <STUDY_REF accession="SRP001623">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001623</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32499</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Oxalobacter formigenes OXCC13">Reference genome for the Human Microbiome Project Oxalobacter_formigenes_OXCC13_ltp_OFBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002758">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002758</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:18640.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1091</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="366"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-13 17:46:17.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>18640.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:18640.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1335</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>Fecal</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16516</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004277" center_name="BI" alias="642400080513-13-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004277</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642400080513-13-S</SUBMITTER_ID>
      <UUID>9d66504a-df96-44a7-b8bf-ac4d772e9ffa</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1099' containing sample 'BROAD:SEQUENCING_SAMPLE:22682.0'</TITLE>
    <STUDY_REF accession="SRP001666">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001666</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32461</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Coprobacillus sp. D6">Reference genome for the Human Microbiome Project Coprobacillus_sp_D6_ltp_HMPREF0273_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002764">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002764</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22682.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1099</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-14 03:10:23.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22682.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22682.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1424</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16660</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004278" center_name="BI" alias="642400080513-14-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004278</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642400080513-14-S</SUBMITTER_ID>
      <UUID>5fc32871-d18d-44b2-8690-5a9d0c049919</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1100' containing sample 'BROAD:SEQUENCING_SAMPLE:17337.0'</TITLE>
    <STUDY_REF accession="SRP001672">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001672</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32469</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium periodonticum 1_1_41FAA">Reference genome for the Human Microbiome Project Fusobacterium_periodonticum_1_1_41FAA_ltp_HMPREF0400_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002765">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002765</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17337.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1100</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-14 03:10:23.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17337.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17337.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1427</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16666</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004279" center_name="BI" alias="642308080514-1-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004279</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642308080514-1-P</SUBMITTER_ID>
      <UUID>e1b6d4ec-bae0-4a86-9e04-863084db2e52</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1104' containing sample 'BROAD:SEQUENCING_SAMPLE:17327.0'</TITLE>
    <STUDY_REF accession="SRP001630">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001630</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32453</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Citrobacter sp. 30_2">Reference genome for the Human Microbiome Project Citrobacter_sp_30_2_ltp_CSAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002761">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002761</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17327.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1104</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="350"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-14 23:39:05.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17327.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17327.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1338</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16546</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004280" center_name="BI" alias="642308080514-2-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004280</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642308080514-2-P</SUBMITTER_ID>
      <UUID>0b54d0ed-6cdc-4052-a5b6-85a588718e22</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1103' containing sample 'BROAD:SEQUENCING_SAMPLE:22675.0'</TITLE>
    <STUDY_REF accession="SRP001683">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001683</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32447</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. D1">Reference genome for the Human Microbiome Project Bacteroides_sp_D1_ltp_BSAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002767">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002767</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22675.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1103</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="382"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-14 23:39:05.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22675.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22675.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1414</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16628</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004281" center_name="BI" alias="642875080515-2-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004281</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642875080515-2-S</SUBMITTER_ID>
      <UUID>35a8532e-2f2e-48e2-86f2-d57c8a92a67d</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1125' containing sample 'BROAD:SEQUENCING_SAMPLE:17347.0'</TITLE>
    <STUDY_REF accession="SRP001678">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001678</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32487</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium ulcerans ATCC 49185">Reference genome for the Human Microbiome Project Fusobacterium_ulcerans_ATCC_49185_ltp_FUAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002778">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002778</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17347.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1125</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-07-07 16:52:22.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17347.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17347.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1430</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16670</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004282" center_name="BI" alias="642875080515-3-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004282</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642875080515-3-S</SUBMITTER_ID>
      <UUID>15e7a946-ffe6-4114-8ee7-35797964ff90</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1126' containing sample 'BROAD:SEQUENCING_SAMPLE:22686.0'</TITLE>
    <STUDY_REF accession="SRP001676">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001676</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32495</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Coprobacillus sp. D7">Reference genome for the Human Microbiome Project Coprobacillus_sp_D7_ltp_MBAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002779">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002779</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22686.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1126</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-07-07 16:52:22.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22686.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22686.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1432</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16674</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004283" center_name="BI" alias="642875080515-4-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004283</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642875080515-4-S</SUBMITTER_ID>
      <UUID>8c898938-fc30-42cb-9297-44655b6718d0</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1126' containing sample 'BROAD:SEQUENCING_SAMPLE:22686.0'</TITLE>
    <STUDY_REF accession="SRP001676">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001676</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32495</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Coprobacillus sp. D7">Reference genome for the Human Microbiome Project Coprobacillus_sp_D7_ltp_MBAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002779">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002779</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22686.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1126</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-07-07 16:52:22.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22686.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22686.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1432</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16674</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004284" center_name="BI" alias="642875080515-5-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004284</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642875080515-5-S</SUBMITTER_ID>
      <UUID>a9f06009-7fa7-4cd9-bf60-0d779927896e</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1134' containing sample 'BROAD:SEQUENCING_SAMPLE:17348.0'</TITLE>
    <STUDY_REF accession="SRP001677">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001677</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32423</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium varium ATCC 27725">This strain will be used for comparative genome analysis Fusobacterium_varium_ATCC_27725_ltp_FVAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002777">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002777</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17348.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1134</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-07-07 16:52:22.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17348.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17348.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1431</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16672</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004285" center_name="BI" alias="642875080515-6-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004285</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642875080515-6-S</SUBMITTER_ID>
      <UUID>e50a89c4-a867-48a0-94a9-6f69c8120a10</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1134' containing sample 'BROAD:SEQUENCING_SAMPLE:17348.0'</TITLE>
    <STUDY_REF accession="SRP001677">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001677</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32423</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium varium ATCC 27725">This strain will be used for comparative genome analysis Fusobacterium_varium_ATCC_27725_ltp_FVAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002777">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002777</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17348.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1134</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-07-07 16:52:22.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17348.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17348.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1431</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16672</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004286" center_name="BI" alias="642875080515-7-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004286</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642875080515-7-S</SUBMITTER_ID>
      <UUID>53267ffd-2982-444a-a1e7-f64bb2a45029</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1135' containing sample 'BROAD:SEQUENCING_SAMPLE:22694.0'</TITLE>
    <STUDY_REF accession="SRP001674">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001674</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32505</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Shigella sp. D8">Reference genome for the Human Microbiome Project Shigella_sp_D8_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002780">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002780</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22694.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1135</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-07-07 16:52:22.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22694.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22694.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1434</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16688</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004287" center_name="BI" alias="642875080515-8-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004287</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642875080515-8-S</SUBMITTER_ID>
      <UUID>1dd503ae-0838-4ded-8523-fc0a1a9a3d87</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1135' containing sample 'BROAD:SEQUENCING_SAMPLE:22694.0'</TITLE>
    <STUDY_REF accession="SRP001674">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001674</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32505</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Shigella sp. D8">Reference genome for the Human Microbiome Project Shigella_sp_D8_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002780">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002780</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22694.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1135</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-07-07 16:52:22.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22694.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22694.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1434</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16688</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004288" center_name="BI" alias="641367080516-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004288</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641367080516-1-S</SUBMITTER_ID>
      <UUID>8de04844-e3c5-4a87-8985-89316df210b3</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1099' containing sample 'BROAD:SEQUENCING_SAMPLE:22682.0'</TITLE>
    <STUDY_REF accession="SRP001666">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001666</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32461</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Coprobacillus sp. D6">Reference genome for the Human Microbiome Project Coprobacillus_sp_D6_ltp_HMPREF0273_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002764">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002764</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22682.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1099</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-16 22:08:48.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22682.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22682.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1424</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16660</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004289" center_name="BI" alias="641367080516-2-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004289</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641367080516-2-S</SUBMITTER_ID>
      <UUID>4bd6790c-a179-49e2-950e-6df7ec233296</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1100' containing sample 'BROAD:SEQUENCING_SAMPLE:17337.0'</TITLE>
    <STUDY_REF accession="SRP001672">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001672</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32469</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium periodonticum 1_1_41FAA">Reference genome for the Human Microbiome Project Fusobacterium_periodonticum_1_1_41FAA_ltp_HMPREF0400_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002765">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002765</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17337.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1100</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-16 22:08:48.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17337.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17337.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1427</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16666</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004290" center_name="BI" alias="642301080519-2-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004290</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642301080519-2-S</SUBMITTER_ID>
      <UUID>c30549e6-7c47-432b-8346-548ef70ccecc</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1108' containing sample 'Fusobacterium sp. 2_1_31'</TITLE>
    <STUDY_REF accession="SRP001671">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001671</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32473</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium periodonticum 2_1_31">Reference genome for the Human Microbiome Project Fusobacterium_periodonticum_2_1_31_ltp_FSAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002773">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002773</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 2_1_31</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1108</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-20 00:39:53.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17338.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17338.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1428</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16668</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004291" center_name="BI" alias="641891080519-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004291</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641891080519-1-S</SUBMITTER_ID>
      <UUID>dd876e76-e038-418f-bbc0-6c7427b3dd63</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1107' containing sample 'BROAD:SEQUENCING_SAMPLE:16677.0'</TITLE>
    <STUDY_REF accession="SRP001669">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001669</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32467</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Escherichia sp. 4_1_40B">Reference genome for the Human Microbiome Project Escherichia_sp_4_1_40B_ltp_ESBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002772">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002772</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16677.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1107</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-20 00:14:19.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16677.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16677.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1425</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16662</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004292" center_name="BI" alias="641891080519-2-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004292</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641891080519-2-S</SUBMITTER_ID>
      <UUID>dc2e9272-fe7b-4968-b738-2ca5ef9e49a0</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1107' containing sample 'BROAD:SEQUENCING_SAMPLE:16677.0'</TITLE>
    <STUDY_REF accession="SRP001669">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001669</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32467</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Escherichia sp. 4_1_40B">Reference genome for the Human Microbiome Project Escherichia_sp_4_1_40B_ltp_ESBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002772">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002772</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16677.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1107</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-20 00:14:19.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16677.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16677.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1425</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16662</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004293" center_name="BI" alias="642513080520-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004293</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642513080520-1-S</SUBMITTER_ID>
      <UUID>2abe0bda-c36a-4071-ad0a-75c55903b0e8</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1064' containing sample 'BROAD:SEQUENCING_SAMPLE:22684.0'</TITLE>
    <STUDY_REF accession="SRP001684">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001684</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32485</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium necrophorum D12">Reference genome for the Human Microbiome Project Fusobacterium_necrophorum_D12_ltp_FSEG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002771">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002771</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22684.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1064</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-08-20 08:45:34.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22684.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22684.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1418</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16649</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004294" center_name="BI" alias="642513080520-2-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004294</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642513080520-2-S</SUBMITTER_ID>
      <UUID>f72404ff-392f-435a-bf60-72e37b19e041</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1099' containing sample 'BROAD:SEQUENCING_SAMPLE:22682.0'</TITLE>
    <STUDY_REF accession="SRP001666">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001666</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32461</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Coprobacillus sp. D6">Reference genome for the Human Microbiome Project Coprobacillus_sp_D6_ltp_HMPREF0273_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002764">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002764</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22682.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1099</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-08-20 08:45:34.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22682.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22682.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1424</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16660</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004295" center_name="BI" alias="641934080520-2-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004295</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641934080520-2-S</SUBMITTER_ID>
      <UUID>75dfafc4-ac6d-4be3-ac91-4cb76be65046</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1063' containing sample 'BROAD:SEQUENCING_SAMPLE:22678.0'</TITLE>
    <STUDY_REF accession="SRP001686">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001686</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32451</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides dorei 5_1_36/D4">Reference genome for the Human Microbiome Project Bacteroides_dorei_5_1_36_D4_ltp_BSEG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002770">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002770</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22678.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1063</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-20 23:13:45.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22678.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22678.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1416</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16645</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004296" center_name="BI" alias="642530080520-3-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004296</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642530080520-3-S</SUBMITTER_ID>
      <UUID>1f7dec91-7d77-413d-8946-f12611f847b7</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1145' containing sample 'BROAD:SEQUENCING_SAMPLE:22693.0'</TITLE>
    <STUDY_REF accession="SRP001675">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001675</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32501</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis D11">Reference genome for the Human Microbiome Project Fusobacterium_nucleatum_subsp_animalis_D11_ltp_PSAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002775">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002775</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22693.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1145</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-20 23:37:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22693.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22693.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1433</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16686</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004297" center_name="BI" alias="642530080520-4-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004297</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642530080520-4-S</SUBMITTER_ID>
      <UUID>73ef1526-2422-4909-bc7c-b8964fe105ef</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1145' containing sample 'BROAD:SEQUENCING_SAMPLE:22693.0'</TITLE>
    <STUDY_REF accession="SRP001675">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001675</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32501</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis D11">Reference genome for the Human Microbiome Project Fusobacterium_nucleatum_subsp_animalis_D11_ltp_PSAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002775">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002775</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22693.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1145</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-20 23:37:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22693.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22693.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1433</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16686</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004298" center_name="BI" alias="642530080520-5-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004298</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642530080520-5-S</SUBMITTER_ID>
      <UUID>7a7f6a51-f2bf-45f9-98f3-8717f3f86630</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1146' containing sample 'BROAD:SEQUENCING_SAMPLE:22695.0'</TITLE>
    <STUDY_REF accession="SRP001673">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001673</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32507</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Shigella sp. D9">Reference genome for the Human Microbiome Project Shigella_sp_D9_ltp_SSJG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002776">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002776</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22695.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1146</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-20 23:37:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22695.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22695.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1435</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16690</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004299" center_name="BI" alias="642530080520-6-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004299</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642530080520-6-S</SUBMITTER_ID>
      <UUID>b63d1d9c-5fbe-4c1b-90db-94dbd3faad1e</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1146' containing sample 'BROAD:SEQUENCING_SAMPLE:22695.0'</TITLE>
    <STUDY_REF accession="SRP001673">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001673</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32507</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Shigella sp. D9">Reference genome for the Human Microbiome Project Shigella_sp_D9_ltp_SSJG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002776">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002776</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22695.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1146</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-20 23:37:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22695.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22695.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1435</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16690</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004300" center_name="BI" alias="642530080520-7-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004300</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642530080520-7-P</SUBMITTER_ID>
      <UUID>7b01d320-53fa-44dc-95f7-65a48e7c8ed7</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1121' containing sample 'BROAD:SEQUENCING_SAMPLE:22676.0'</TITLE>
    <STUDY_REF accession="SRP001682">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001682</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32449</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. D2">Reference genome for the Human Microbiome Project Bacteroides_sp_D2_ltp_BSGG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002774">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002774</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22676.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1121</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="363"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-20 23:37:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22676.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22676.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1415</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16644</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004301" center_name="BI" alias="642530080520-8-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004301</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642530080520-8-P</SUBMITTER_ID>
      <UUID>4e62b153-c00a-46cc-801c-bad4e97f3c53</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1121' containing sample 'BROAD:SEQUENCING_SAMPLE:22676.0'</TITLE>
    <STUDY_REF accession="SRP001682">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001682</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32449</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. D2">Reference genome for the Human Microbiome Project Bacteroides_sp_D2_ltp_BSGG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002774">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002774</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22676.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1121</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="363"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-20 23:37:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22676.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22676.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1415</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16644</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004302" center_name="BI" alias="642530080520-9-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004302</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642530080520-9-P</SUBMITTER_ID>
      <UUID>724d1b40-def0-4f96-981c-ba3d8da22558</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1122' containing sample 'BROAD:SEQUENCING_SAMPLE:17336.0'</TITLE>
    <STUDY_REF accession="SRP001668">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001668</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32421</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium mortiferum ATCC 9817">This strain will be used for comparative genome analysis Fusobacterium_mortiferum_ATCC_9817_ltp_FMAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002768">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002768</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17336.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1122</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="415"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-20 23:37:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17336.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17336.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1426</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16665</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004303" center_name="BI" alias="642530080520-10-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004303</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642530080520-10-P</SUBMITTER_ID>
      <UUID>1ded901f-6d9a-4944-bf22-f9ae15ac436d</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1122' containing sample 'BROAD:SEQUENCING_SAMPLE:17336.0'</TITLE>
    <STUDY_REF accession="SRP001668">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001668</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32421</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium mortiferum ATCC 9817">This strain will be used for comparative genome analysis Fusobacterium_mortiferum_ATCC_9817_ltp_FMAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002768">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002768</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17336.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1122</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="415"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-20 23:37:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17336.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17336.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1426</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16665</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004304" center_name="BI" alias="642530080520-13-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004304</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642530080520-13-P</SUBMITTER_ID>
      <UUID>4c53c9a6-0d85-4893-a088-69bb3ec07d40</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1150' containing sample 'BROAD:SEQUENCING_SAMPLE:22681.0'</TITLE>
    <STUDY_REF accession="SRP001685">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001685</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32459</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Clostridium sp. D5">Reference genome for the Human Microbiome Project Clostridium_sp_D5_ltp_HMPREF0240_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002769">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002769</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22681.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1150</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="396"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-20 23:37:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22681.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22681.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1417</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16648</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004305" center_name="BI" alias="642530080520-14-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004305</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642530080520-14-P</SUBMITTER_ID>
      <UUID>eae8b3ac-f25c-4dd1-a213-cee354cdb40d</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1150' containing sample 'BROAD:SEQUENCING_SAMPLE:22681.0'</TITLE>
    <STUDY_REF accession="SRP001685">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001685</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32459</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Clostridium sp. D5">Reference genome for the Human Microbiome Project Clostridium_sp_D5_ltp_HMPREF0240_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002769">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002769</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22681.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1150</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="396"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-20 23:37:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22681.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22681.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1417</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16648</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004306" center_name="BI" alias="642530080520-15-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004306</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642530080520-15-P</SUBMITTER_ID>
      <UUID>f009eb3a-d0f0-4f6a-8b42-c41b4f8ddbca</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1151' containing sample 'BROAD:SEQUENCING_SAMPLE:22684.0'</TITLE>
    <STUDY_REF accession="SRP001684">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001684</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32485</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium necrophorum D12">Reference genome for the Human Microbiome Project Fusobacterium_necrophorum_D12_ltp_FSEG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002771">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002771</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22684.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1151</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="462"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-20 23:37:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22684.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22684.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1418</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16650</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004307" center_name="BI" alias="642530080520-16-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004307</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642530080520-16-P</SUBMITTER_ID>
      <UUID>678684d2-bd86-40b1-bef5-dcbee49f2d39</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1151' containing sample 'BROAD:SEQUENCING_SAMPLE:22684.0'</TITLE>
    <STUDY_REF accession="SRP001684">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001684</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32485</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium necrophorum D12">Reference genome for the Human Microbiome Project Fusobacterium_necrophorum_D12_ltp_FSEG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002771">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002771</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22684.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1151</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="462"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-20 23:37:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22684.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22684.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1418</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16650</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004308" center_name="BI" alias="642335080523-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004308</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642335080523-1-S</SUBMITTER_ID>
      <UUID>6950d734-05a7-4b55-bc2f-1cddd7dc6245</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1125' containing sample 'BROAD:SEQUENCING_SAMPLE:17347.0'</TITLE>
    <STUDY_REF accession="SRP001678">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001678</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32487</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium ulcerans ATCC 49185">Reference genome for the Human Microbiome Project Fusobacterium_ulcerans_ATCC_49185_ltp_FUAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002778">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002778</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17347.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1125</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-24 00:26:39.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17347.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17347.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1430</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16670</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004309" center_name="BI" alias="642335080523-2-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004309</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642335080523-2-S</SUBMITTER_ID>
      <UUID>556b487d-809a-4c68-94a7-775ad773cba8</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1126' containing sample 'BROAD:SEQUENCING_SAMPLE:22686.0'</TITLE>
    <STUDY_REF accession="SRP001676">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001676</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32495</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Coprobacillus sp. D7">Reference genome for the Human Microbiome Project Coprobacillus_sp_D7_ltp_MBAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002779">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002779</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22686.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1126</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-24 00:26:39.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22686.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22686.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1432</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16674</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004310" center_name="BI" alias="642439080523-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004310</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642439080523-1-S</SUBMITTER_ID>
      <UUID>0794dce2-f34e-4756-b5e9-0faf120a1bf1</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1107' containing sample 'BROAD:SEQUENCING_SAMPLE:16677.0'</TITLE>
    <STUDY_REF accession="SRP001669">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001669</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32467</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Escherichia sp. 4_1_40B">Reference genome for the Human Microbiome Project Escherichia_sp_4_1_40B_ltp_ESBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002772">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002772</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16677.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1107</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-27 12:18:42.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16677.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16677.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1425</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16662</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004311" center_name="BI" alias="642439080523-2-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004311</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642439080523-2-S</SUBMITTER_ID>
      <UUID>98959390-efa8-44de-b8e7-1566dea53209</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1135' containing sample 'BROAD:SEQUENCING_SAMPLE:22694.0'</TITLE>
    <STUDY_REF accession="SRP001674">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001674</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32505</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Shigella sp. D8">Reference genome for the Human Microbiome Project Shigella_sp_D8_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002780">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002780</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22694.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1135</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-27 12:18:42.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22694.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22694.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1434</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16688</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004312" center_name="BI" alias="642439080523-4-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004312</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642439080523-4-S</SUBMITTER_ID>
      <UUID>a047cffb-2c6f-4904-a0a7-5b26a1d5ddab</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1146' containing sample 'BROAD:SEQUENCING_SAMPLE:22695.0'</TITLE>
    <STUDY_REF accession="SRP001673">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001673</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32507</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Shigella sp. D9">Reference genome for the Human Microbiome Project Shigella_sp_D9_ltp_SSJG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002776">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002776</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22695.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1146</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-27 12:18:42.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22695.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22695.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1435</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16690</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004313" center_name="BI" alias="641557080523-1-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004313</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641557080523-1-P</SUBMITTER_ID>
      <UUID>1b4443f7-d797-4ca2-9990-0c61f74cd809</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1154' containing sample 'BROAD:SEQUENCING_SAMPLE:22678.0'</TITLE>
    <STUDY_REF accession="SRP001686">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001686</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32451</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides dorei 5_1_36/D4">Reference genome for the Human Microbiome Project Bacteroides_dorei_5_1_36_D4_ltp_BSEG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002770">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002770</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22678.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1154</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="440"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-24 00:40:16.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22678.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22678.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1416</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16646</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004314" center_name="BI" alias="641557080523-2-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004314</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641557080523-2-P</SUBMITTER_ID>
      <UUID>91a86441-e16e-4203-89c9-94e8e55d18f8</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1154' containing sample 'BROAD:SEQUENCING_SAMPLE:22678.0'</TITLE>
    <STUDY_REF accession="SRP001686">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001686</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32451</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides dorei 5_1_36/D4">Reference genome for the Human Microbiome Project Bacteroides_dorei_5_1_36_D4_ltp_BSEG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002770">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002770</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22678.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1154</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="440"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-24 00:40:16.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22678.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22678.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1416</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16646</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004315" center_name="BI" alias="641557080523-3-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004315</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641557080523-3-P</SUBMITTER_ID>
      <UUID>86a1d105-ac9d-45ea-8358-42aeb0fda52d</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1155' containing sample 'BROAD:SEQUENCING_SAMPLE:17337.0'</TITLE>
    <STUDY_REF accession="SRP001672">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001672</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32469</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium periodonticum 1_1_41FAA">Reference genome for the Human Microbiome Project Fusobacterium_periodonticum_1_1_41FAA_ltp_HMPREF0400_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002765">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002765</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17337.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1155</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="552"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-24 00:40:16.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17337.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17337.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1427</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16667</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004316" center_name="BI" alias="641557080523-4-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004316</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641557080523-4-P</SUBMITTER_ID>
      <UUID>5cac382f-7c9e-4ee7-97d9-22379378abf2</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1155' containing sample 'BROAD:SEQUENCING_SAMPLE:17337.0'</TITLE>
    <STUDY_REF accession="SRP001672">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001672</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32469</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium periodonticum 1_1_41FAA">Reference genome for the Human Microbiome Project Fusobacterium_periodonticum_1_1_41FAA_ltp_HMPREF0400_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002765">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002765</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17337.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1155</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="552"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-24 00:40:16.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17337.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17337.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1427</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16667</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004317" center_name="BI" alias="641557080523-5-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004317</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641557080523-5-P</SUBMITTER_ID>
      <UUID>c7c275b6-7600-4145-9f33-af65bd02ae16</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1166' containing sample 'BROAD:SEQUENCING_SAMPLE:16658.0'</TITLE>
    <STUDY_REF accession="SRP001667">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001667</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32437</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 2_1_7">Reference genome for the Human Microbiome Project Bacteroides_sp_2_1_7_ltp_BSDG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002766">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002766</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16658.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1166</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="479"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-24 00:40:16.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16658.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16658.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1423</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16659</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004318" center_name="BI" alias="641557080523-6-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004318</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641557080523-6-P</SUBMITTER_ID>
      <UUID>23e65e71-747a-4d7e-8532-9ee944412c66</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1166' containing sample 'BROAD:SEQUENCING_SAMPLE:16658.0'</TITLE>
    <STUDY_REF accession="SRP001667">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001667</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32437</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 2_1_7">Reference genome for the Human Microbiome Project Bacteroides_sp_2_1_7_ltp_BSDG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002766">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002766</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16658.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1166</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="479"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-24 00:40:16.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16658.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16658.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1423</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16659</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004319" center_name="BI" alias="641557080523-7-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004319</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641557080523-7-P</SUBMITTER_ID>
      <UUID>38d2678c-4227-4d0b-9974-7ee0b2d31219</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1167' containing sample 'BROAD:SEQUENCING_SAMPLE:22682.0'</TITLE>
    <STUDY_REF accession="SRP001666">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001666</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32461</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Coprobacillus sp. D6">Reference genome for the Human Microbiome Project Coprobacillus_sp_D6_ltp_HMPREF0273_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002764">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002764</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22682.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1167</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="489"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-24 00:40:16.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22682.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22682.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1424</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16661</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004320" center_name="BI" alias="641557080523-8-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004320</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641557080523-8-P</SUBMITTER_ID>
      <UUID>9f737562-2652-489d-adf2-d2a93d7ebc71</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1167' containing sample 'BROAD:SEQUENCING_SAMPLE:22682.0'</TITLE>
    <STUDY_REF accession="SRP001666">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001666</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32461</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Coprobacillus sp. D6">Reference genome for the Human Microbiome Project Coprobacillus_sp_D6_ltp_HMPREF0273_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002764">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002764</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22682.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1167</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="489"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-24 00:40:16.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22682.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22682.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1424</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16661</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004321" center_name="BI" alias="641557080523-9-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004321</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641557080523-9-P</SUBMITTER_ID>
      <UUID>83a63a40-cd58-4f78-97dc-e4350cd4aca2</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1174' containing sample 'BROAD:SEQUENCING_SAMPLE:17347.0'</TITLE>
    <STUDY_REF accession="SRP001678">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001678</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32487</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium ulcerans ATCC 49185">Reference genome for the Human Microbiome Project Fusobacterium_ulcerans_ATCC_49185_ltp_FUAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002778">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002778</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17347.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1174</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="437"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-24 00:40:16.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17347.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17347.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1430</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16671</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004322" center_name="BI" alias="641557080523-10-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004322</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641557080523-10-P</SUBMITTER_ID>
      <UUID>b2595386-6961-4b96-9895-9c2cf9f99ed9</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1174' containing sample 'BROAD:SEQUENCING_SAMPLE:17347.0'</TITLE>
    <STUDY_REF accession="SRP001678">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001678</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32487</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium ulcerans ATCC 49185">Reference genome for the Human Microbiome Project Fusobacterium_ulcerans_ATCC_49185_ltp_FUAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002778">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002778</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17347.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1174</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="437"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-24 00:40:16.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17347.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17347.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1430</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16671</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004323" center_name="BI" alias="642035080605-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004323</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642035080605-1-S</SUBMITTER_ID>
      <UUID>aba20c59-574b-48db-8796-692147028617</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1135' containing sample 'BROAD:SEQUENCING_SAMPLE:22694.0'</TITLE>
    <STUDY_REF accession="SRP001674">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001674</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32505</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Shigella sp. D8">Reference genome for the Human Microbiome Project Shigella_sp_D8_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002780">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002780</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22694.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1135</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-10 16:25:17.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22694.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22694.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1434</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16688</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004324" center_name="BI" alias="642035080605-2-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004324</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642035080605-2-S</SUBMITTER_ID>
      <UUID>a5b6d5e9-ab62-4b0a-b74a-f808912562ae</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1135' containing sample 'BROAD:SEQUENCING_SAMPLE:22694.0'</TITLE>
    <STUDY_REF accession="SRP001674">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001674</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32505</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Shigella sp. D8">Reference genome for the Human Microbiome Project Shigella_sp_D8_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002780">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002780</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22694.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1135</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-10 16:25:17.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22694.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22694.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1434</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16688</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004325" center_name="BI" alias="642035080605-5-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004325</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642035080605-5-S</SUBMITTER_ID>
      <UUID>5b4129d2-33ea-49f1-81d4-c269313e8026</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1063' containing sample 'BROAD:SEQUENCING_SAMPLE:22678.0'</TITLE>
    <STUDY_REF accession="SRP001686">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001686</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32451</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides dorei 5_1_36/D4">Reference genome for the Human Microbiome Project Bacteroides_dorei_5_1_36_D4_ltp_BSEG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002770">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002770</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22678.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1063</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-10 16:25:17.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22678.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22678.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1416</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16645</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004326" center_name="BI" alias="642035080605-6-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004326</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642035080605-6-S</SUBMITTER_ID>
      <UUID>b39bdfad-fd8e-4659-b1f5-4cd32e80c1db</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1063' containing sample 'BROAD:SEQUENCING_SAMPLE:22678.0'</TITLE>
    <STUDY_REF accession="SRP001686">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001686</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32451</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides dorei 5_1_36/D4">Reference genome for the Human Microbiome Project Bacteroides_dorei_5_1_36_D4_ltp_BSEG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002770">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002770</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22678.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1063</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-10 16:25:17.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22678.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22678.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1416</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16645</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004327" center_name="BI" alias="642035080605-15-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004327</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642035080605-15-P</SUBMITTER_ID>
      <UUID>8c77adf8-c3ca-4766-94eb-424a1a138c07</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1211' containing sample 'BROAD:SEQUENCING_SAMPLE:16677.0'</TITLE>
    <STUDY_REF accession="SRP001669">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001669</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32467</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Escherichia sp. 4_1_40B">Reference genome for the Human Microbiome Project Escherichia_sp_4_1_40B_ltp_ESBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002772">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002772</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16677.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1211</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="312"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-10 16:25:17.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16677.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16677.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1425</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16663</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004328" center_name="BI" alias="642035080605-16-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004328</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642035080605-16-P</SUBMITTER_ID>
      <UUID>c1bab0f5-c4db-4c4e-aff2-997c1a37162a</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1211' containing sample 'BROAD:SEQUENCING_SAMPLE:16677.0'</TITLE>
    <STUDY_REF accession="SRP001669">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001669</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32467</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Escherichia sp. 4_1_40B">Reference genome for the Human Microbiome Project Escherichia_sp_4_1_40B_ltp_ESBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002772">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002772</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16677.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1211</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="312"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-10 16:25:17.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16677.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16677.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1425</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16663</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004329" center_name="BI" alias="641746080618-1-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004329</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641746080618-1-P</SUBMITTER_ID>
      <UUID>76e7ff86-d0e6-4dcf-ab9b-9fbc55e294c2</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1122' containing sample 'BROAD:SEQUENCING_SAMPLE:17336.0'</TITLE>
    <STUDY_REF accession="SRP001668">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001668</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32421</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium mortiferum ATCC 9817">This strain will be used for comparative genome analysis Fusobacterium_mortiferum_ATCC_9817_ltp_FMAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002768">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002768</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17336.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1122</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="415"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-18 20:10:36.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17336.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17336.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1426</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16665</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004330" center_name="BI" alias="641746080618-2-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004330</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641746080618-2-P</SUBMITTER_ID>
      <UUID>3db173a3-8396-48bf-a4e4-223f3e67e726</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1151' containing sample 'BROAD:SEQUENCING_SAMPLE:22684.0'</TITLE>
    <STUDY_REF accession="SRP001684">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001684</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32485</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium necrophorum D12">Reference genome for the Human Microbiome Project Fusobacterium_necrophorum_D12_ltp_FSEG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002771">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002771</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22684.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1151</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="462"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-18 20:10:36.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22684.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22684.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1418</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16650</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004331" center_name="BI" alias="641746080618-3-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004331</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641746080618-3-P</SUBMITTER_ID>
      <UUID>deb86b0d-9ba5-42e5-af49-73ae884d8755</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1155' containing sample 'BROAD:SEQUENCING_SAMPLE:17337.0'</TITLE>
    <STUDY_REF accession="SRP001672">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001672</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32469</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium periodonticum 1_1_41FAA">Reference genome for the Human Microbiome Project Fusobacterium_periodonticum_1_1_41FAA_ltp_HMPREF0400_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002765">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002765</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17337.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1155</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="552"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-18 20:10:36.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17337.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17337.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1427</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16667</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004332" center_name="BI" alias="641746080618-4-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004332</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641746080618-4-P</SUBMITTER_ID>
      <UUID>b7d7d125-1e0c-4416-99ab-c39500fbfffe</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1174' containing sample 'BROAD:SEQUENCING_SAMPLE:17347.0'</TITLE>
    <STUDY_REF accession="SRP001678">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001678</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32487</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium ulcerans ATCC 49185">Reference genome for the Human Microbiome Project Fusobacterium_ulcerans_ATCC_49185_ltp_FUAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002778">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002778</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17347.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1174</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="437"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-18 20:10:36.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17347.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17347.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1430</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16671</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004333" center_name="BI" alias="641585080618-1-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004333</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641585080618-1-P</SUBMITTER_ID>
      <UUID>55067988-a653-419f-9d5b-d918b8be20bc</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1211' containing sample 'BROAD:SEQUENCING_SAMPLE:16677.0'</TITLE>
    <STUDY_REF accession="SRP001669">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001669</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32467</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Escherichia sp. 4_1_40B">Reference genome for the Human Microbiome Project Escherichia_sp_4_1_40B_ltp_ESBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002772">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002772</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16677.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1211</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="312"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-18 22:39:43.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16677.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16677.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1425</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16663</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004334" center_name="BI" alias="641585080618-2-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004334</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641585080618-2-P</SUBMITTER_ID>
      <UUID>1218db37-6c21-4d95-936b-7832729b3d0f</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1211' containing sample 'BROAD:SEQUENCING_SAMPLE:16677.0'</TITLE>
    <STUDY_REF accession="SRP001669">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001669</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32467</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Escherichia sp. 4_1_40B">Reference genome for the Human Microbiome Project Escherichia_sp_4_1_40B_ltp_ESBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002772">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002772</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16677.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1211</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="312"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-18 22:39:43.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16677.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16677.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1425</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16663</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004335" center_name="BI" alias="641585080618-3-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004335</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641585080618-3-P</SUBMITTER_ID>
      <UUID>f2038501-74cc-44eb-aadf-daccc37dc884</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1212' containing sample 'Fusobacterium sp. 2_1_31'</TITLE>
    <STUDY_REF accession="SRP001671">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001671</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32473</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium periodonticum 2_1_31">Reference genome for the Human Microbiome Project Fusobacterium_periodonticum_2_1_31_ltp_FSAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002773">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002773</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 2_1_31</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1212</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="455"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-18 22:39:43.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17338.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17338.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1428</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16669</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004336" center_name="BI" alias="641585080618-4-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004336</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641585080618-4-P</SUBMITTER_ID>
      <UUID>62e751fd-62ba-4c08-b5ac-1c23856beb71</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1189' containing sample 'BROAD:SEQUENCING_SAMPLE:17348.0'</TITLE>
    <STUDY_REF accession="SRP001677">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001677</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32423</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium varium ATCC 27725">This strain will be used for comparative genome analysis Fusobacterium_varium_ATCC_27725_ltp_FVAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002777">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002777</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17348.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1189</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="403"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-18 22:39:43.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17348.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17348.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1431</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16673</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004337" center_name="BI" alias="642233080619-2-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004337</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642233080619-2-P</SUBMITTER_ID>
      <UUID>1362a8b7-6d98-42fe-b552-7a225a9450b4</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1190' containing sample 'BROAD:SEQUENCING_SAMPLE:22694.0'</TITLE>
    <STUDY_REF accession="SRP001674">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001674</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32505</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Shigella sp. D8">Reference genome for the Human Microbiome Project Shigella_sp_D8_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002780">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002780</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22694.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1190</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="407"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-20 16:59:46.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22694.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22694.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1434</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16689</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004338" center_name="BI" alias="642495080619-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004338</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642495080619-1-S</SUBMITTER_ID>
      <UUID>cfa900cb-0b58-4dd4-aa8f-0782855c8e89</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1135' containing sample 'BROAD:SEQUENCING_SAMPLE:22694.0'</TITLE>
    <STUDY_REF accession="SRP001674">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001674</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32505</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Shigella sp. D8">Reference genome for the Human Microbiome Project Shigella_sp_D8_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002780">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002780</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22694.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1135</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-19 19:40:50.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22694.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22694.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1434</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16688</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004339" center_name="BI" alias="642495080619-2-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004339</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642495080619-2-S</SUBMITTER_ID>
      <UUID>9471e3ba-b7c3-4692-9220-17b7d0ed7d7c</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1063' containing sample 'BROAD:SEQUENCING_SAMPLE:22678.0'</TITLE>
    <STUDY_REF accession="SRP001686">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001686</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32451</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides dorei 5_1_36/D4">Reference genome for the Human Microbiome Project Bacteroides_dorei_5_1_36_D4_ltp_BSEG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002770">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002770</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22678.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1063</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-19 19:40:50.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22678.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22678.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1416</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16645</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004340" center_name="BI" alias="641788080620-1-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004340</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641788080620-1-P</SUBMITTER_ID>
      <UUID>c949f261-c51a-4b17-bc64-8fa26e595367</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1167' containing sample 'BROAD:SEQUENCING_SAMPLE:22682.0'</TITLE>
    <STUDY_REF accession="SRP001666">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001666</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32461</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Coprobacillus sp. D6">Reference genome for the Human Microbiome Project Coprobacillus_sp_D6_ltp_HMPREF0273_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002764">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002764</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22682.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1167</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="489"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-08-15 18:35:01.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22682.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22682.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1424</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16661</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004341" center_name="BI" alias="641788080620-2-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004341</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641788080620-2-P</SUBMITTER_ID>
      <UUID>0644c35f-3893-4f32-81da-aac49d858f25</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1167' containing sample 'BROAD:SEQUENCING_SAMPLE:22682.0'</TITLE>
    <STUDY_REF accession="SRP001666">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001666</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32461</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Coprobacillus sp. D6">Reference genome for the Human Microbiome Project Coprobacillus_sp_D6_ltp_HMPREF0273_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002764">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002764</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22682.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1167</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="489"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-08-15 18:35:01.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22682.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22682.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1424</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16661</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004342" center_name="BI" alias="642319080625-1-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004342</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642319080625-1-P</SUBMITTER_ID>
      <UUID>1a8de0d3-8cec-42dc-adb9-d9beb06df6df</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1175' containing sample 'BROAD:SEQUENCING_SAMPLE:22686.0'</TITLE>
    <STUDY_REF accession="SRP001676">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001676</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32495</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Coprobacillus sp. D7">Reference genome for the Human Microbiome Project Coprobacillus_sp_D7_ltp_MBAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002779">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002779</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22686.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1175</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="458"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-08-13 15:34:35.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22686.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22686.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1432</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16675</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004343" center_name="BI" alias="642319080625-2-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004343</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642319080625-2-P</SUBMITTER_ID>
      <UUID>c6564119-26d3-4e6a-b43f-5fc595581c0f</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1216' containing sample 'BROAD:SEQUENCING_SAMPLE:22693.0'</TITLE>
    <STUDY_REF accession="SRP001675">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001675</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32501</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis D11">Reference genome for the Human Microbiome Project Fusobacterium_nucleatum_subsp_animalis_D11_ltp_PSAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002775">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002775</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22693.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1216</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="401"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-08-13 15:34:35.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22693.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22693.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1433</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16687</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004344" center_name="BI" alias="644924080627-1-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004344</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">644924080627-1-P</SUBMITTER_ID>
      <UUID>aa0bde17-24b5-4959-85d1-1c5541fe252c</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1217' containing sample 'BROAD:SEQUENCING_SAMPLE:22695.0'</TITLE>
    <STUDY_REF accession="SRP001673">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001673</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32507</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Shigella sp. D9">Reference genome for the Human Microbiome Project Shigella_sp_D9_ltp_SSJG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002776">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002776</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22695.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1217</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="376"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-08-13 15:50:34.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22695.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22695.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1435</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16691</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004345" center_name="BI" alias="644924080627-2-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004345</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">644924080627-2-P</SUBMITTER_ID>
      <UUID>d7dc0861-4832-44ba-9ad2-875ebed52eab</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1217' containing sample 'BROAD:SEQUENCING_SAMPLE:22695.0'</TITLE>
    <STUDY_REF accession="SRP001673">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001673</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32507</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Shigella sp. D9">Reference genome for the Human Microbiome Project Shigella_sp_D9_ltp_SSJG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002776">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002776</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22695.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1217</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="376"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-08-13 15:50:34.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22695.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22695.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1435</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16691</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004346" center_name="BI" alias="22816.WR16989.454-1322.645474080721.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004346</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22816.WR16989.454-1322.645474080721.S</SUBMITTER_ID>
      <UUID>9e406492-2ba7-4d70-94ee-456694afb5dc</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1322' containing sample 'BROAD:SEQUENCING_SAMPLE:17346.0'</TITLE>
    <STUDY_REF accession="SRP001680">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001680</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32481</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 4_8">Reference genome for the Human Microbiome Project Fusobacterium_nucleatum_subsp_animalis_4_8_ltp_HMPREF0409_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002781">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002781</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17346.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1322</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TTGTGTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-03-18 22:14:51.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17346.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17346.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1540</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16989</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004347" center_name="BI" alias="22812.WR16990.454-1324.645016080723.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004347</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22812.WR16990.454-1324.645016080723.S</SUBMITTER_ID>
      <UUID>f6479861-4bc9-4bd2-be0b-316248eaf02c</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1324' containing sample 'BROAD:SEQUENCING_SAMPLE:16681.0'</TITLE>
    <STUDY_REF accession="SRP001679">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001679</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32483</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 7_1">Reference genome for the Human Microbiome Project Fusobacterium_nucleatum_subsp_animalis_7_1_ltp_FSDG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002782">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002782</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16681.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1324</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TTGGAGGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-03-18 16:43:20.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16681.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16681.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1541</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16990</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004348" center_name="BI" alias="463181.WR25916.Solexa-67946.B02H8ACXX110804.P.UNMATCHED">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004348</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">463181.WR25916.Solexa-67946.B02H8ACXX110804.P.UNMATCHED</SUBMITTER_ID>
      <UUID>7a21563a-81d4-4f17-98fe-60f2e8c5ee17</UUID>
    </IDENTIFIERS>
    <TITLE>Genome Sequencing and Assembly of Heterocephalus glaber (Naked Mole Rat).</TITLE>
    <STUDY_REF accession="SRP007995">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP007995</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA72441</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Heterocephalus glaber">Heterocephalus glaber genome sequencing Lab_Born_Non_Inbred_ltp_KGO_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>6-14kb genomic insert library</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS024887">
        <POOL>
          <DEFAULT_MEMBER>
            <IDENTIFIERS>
              <PRIMARY_ID>SRS024887</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN00009845</EXTERNAL_ID>
              <EXTERNAL_ID namespace="NCBI">unidentified</EXTERNAL_ID>
            </IDENTIFIERS>
          </DEFAULT_MEMBER>
          <MEMBER member_name="tagged_375_CATGCTTA" proportion="0.25" accession="SRS259217">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS259217</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">PRJNA167910.NMR 29</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_375">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="tagged_504_CTACCAGG" proportion="0.25" accession="SRS259217">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS259217</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">PRJNA167910.NMR 29</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_504">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="tagged_630_GCACATCT" proportion="0.25" accession="SRS259217">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS259217</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">PRJNA167910.NMR 29</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_630">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="tagged_908_TGCTCGAC" proportion="0.25" accession="SRS259217">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS259217</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">PRJNA167910.NMR 29</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_908">barcode</READ_LABEL>
          </MEMBER>
        </POOL>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-67946</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="418" NOMINAL_SDEV="0.0E0"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>210</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="102">
              <BASECALL read_group_tag="tagged_375" min_match="7" max_mismatch="1" match_edge="full">CATGCTTA</BASECALL>
              <BASECALL read_group_tag="tagged_504" min_match="7" max_mismatch="1" match_edge="full">CTACCAGG</BASECALL>
              <BASECALL read_group_tag="tagged_630" min_match="7" max_mismatch="1" match_edge="full">GCACATCT</BASECALL>
              <BASECALL read_group_tag="tagged_908" min_match="7" max_mismatch="1" match_edge="full">TGCTCGAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>110</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-08-13 22:24:00.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.12.4.2</VERSION>
          <NOTES>Sequencer Application 1.4.8</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_ids</TAG>
        <VALUE>113363.0, 113364.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsids</TAG>
        <VALUE>broadinstitute.org:bsp.prod.sample:23ZDM, broadinstitute.org:bsp.prod.sample:23ZDN</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>DNA:DNA Genomic</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G14382</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>root_sample_id</TAG>
        <VALUE>SM-21KSM</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_ids</TAG>
        <VALUE>SM-23ZDM, SM-23ZDN</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25916</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004349" center_name="BI" alias="645016080723-4-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004349</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">645016080723-4-P</SUBMITTER_ID>
      <UUID>506ddcc5-3232-4853-9e7f-773710c2a40a</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1335' containing sample 'BROAD:SEQUENCING_SAMPLE:17344.0'</TITLE>
    <STUDY_REF accession="SRP001614">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001614</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32477</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium gonidiaformans 3-1-5R">Reference genome for the Human Microbiome Project Fusobacterium_gonidiaformans_3_1_5R_3_1_5R_ltp_FSBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002783">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002783</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17344.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1335</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="330"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-03-18 16:43:20.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17344.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17344.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1538</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16993</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004350" center_name="BI" alias="645072080723-4-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004350</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">645072080723-4-P</SUBMITTER_ID>
      <UUID>32a8d527-8911-405a-b71f-f432042b5a41</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1342' containing sample 'BROAD:SEQUENCING_SAMPLE:17340.0'</TITLE>
    <STUDY_REF accession="SRP001681">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001681</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32475</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 21_1A">Reference genome for the Human Microbiome Project Fusobacterium_nucleatum_subsp_animalis_21_1A_ltp_HMPREF0404_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002784">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002784</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17340.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1342</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="413"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-07-25 18:41:00.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17340.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17340.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1542</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16997</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004351" center_name="BI" alias="645020080724-3-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004351</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">645020080724-3-P</SUBMITTER_ID>
      <UUID>38ff57cf-1589-4878-83aa-18f8235390da</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1311' containing sample 'BROAD:SEQUENCING_SAMPLE:17321.0'</TITLE>
    <STUDY_REF accession="SRP001620">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001620</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32439</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 2_2_4">Reference genome for the Human Microbiome Project Bacteroides_sp_2_2_4_ltp_BSCG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002785">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002785</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17321.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1311</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="403"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-09-25 14:27:33.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17321.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17321.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1535</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16983</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004352" center_name="BI" alias="645020080724-4-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004352</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">645020080724-4-P</SUBMITTER_ID>
      <UUID>f9559b25-9c9b-4154-90ef-f578418c5ce9</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1338' containing sample 'BROAD:SEQUENCING_SAMPLE:17346.0'</TITLE>
    <STUDY_REF accession="SRP001680">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001680</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32481</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 4_8">Reference genome for the Human Microbiome Project Fusobacterium_nucleatum_subsp_animalis_4_8_ltp_HMPREF0409_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002781">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002781</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17346.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1338</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="394"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-09-25 14:27:33.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17346.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17346.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1540</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16995</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004353" center_name="BI" alias="22814.WR16984.454-1291.645324080708.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004353</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22814.WR16984.454-1291.645324080708.S</SUBMITTER_ID>
      <UUID>84f81be0-183a-4b68-99c2-be45a42ffebf</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1291' containing sample 'BROAD:SEQUENCING_SAMPLE:17333.0'</TITLE>
    <STUDY_REF accession="SRP001622">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001622</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32465</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Escherichia sp. 3_2_53FAA">Reference genome for the Human Microbiome Project Escherichia_sp_3_2_53FAA_ltp_ESAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002786">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002786</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17333.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1291</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">AAGAGTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-07-09 00:13:56.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17333.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17333.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1536</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16984</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004354" center_name="BI" alias="22811.WR16986.454-1294.642553080709.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004354</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22811.WR16986.454-1294.642553080709.S</SUBMITTER_ID>
      <UUID>20ef4fb2-0fef-48c3-aea5-2fab30f97f53</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1294' containing sample 'BROAD:SEQUENCING_SAMPLE:17335.0'</TITLE>
    <STUDY_REF accession="SRP001613">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001613</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32419</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium gonidiaformans ATCC 25563">This strain will be used for comparative genome analysis Fusobacterium_gonidiaformans_ATCC_25563_ltp_FGAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002787">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002787</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17335.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1294</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">AAGGCCTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-07-09 22:10:03.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17335.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17335.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1537</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16986</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004355" center_name="BI" alias="645073080714-1-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004355</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">645073080714-1-P</SUBMITTER_ID>
      <UUID>1327d4b0-9b35-4714-8e6b-2a88eb92510a</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1299' containing sample 'BROAD:SEQUENCING_SAMPLE:16656.0'</TITLE>
    <STUDY_REF accession="SRP001625">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001625</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32433</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides fragilis 3_1_12">Reference genome for the Human Microbiome Project Bacteroides_fragilis_3_1_12_ltp_BFAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002788">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002788</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16656.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1299</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="398"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-07-14 19:14:58.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16656.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16656.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1533</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16981</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004356" center_name="BI" alias="22796.WR16987.454-1302.645088080715.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004356</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22796.WR16987.454-1302.645088080715.S</SUBMITTER_ID>
      <UUID>146d3ed0-ca81-45ba-a34a-7a04a2ab487f</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1302' containing sample 'BROAD:SEQUENCING_SAMPLE:17344.0'</TITLE>
    <STUDY_REF accession="SRP001614">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001614</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32477</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium gonidiaformans 3-1-5R">Reference genome for the Human Microbiome Project Fusobacterium_gonidiaformans_3_1_5R_3_1_5R_ltp_FSBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002783">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002783</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17344.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1302</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">AGGTTGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-03-18 19:20:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17344.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17344.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1538</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16987</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004357" center_name="BI" alias="22798.WR16988.454-1304.645088080715.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004357</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22798.WR16988.454-1304.645088080715.S</SUBMITTER_ID>
      <UUID>3c9203ed-678e-47b5-848b-0762c2c7d5dd</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1304' containing sample 'Fusobacterium sp. 4_1_13'</TITLE>
    <STUDY_REF accession="SRP001618">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001618</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32479</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. vincentii 4_1_13">Reference genome for the Human Microbiome Project Fusobacterium_nucleatum_subsp_vincentii_4_1_13_ltp_FSCG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002789">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002789</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 4_1_13</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1304</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TGGTGAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-03-18 19:20:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17345.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17345.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1539</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16988</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004358" center_name="BI" alias="22806.WR16980.454-1293.645426080716.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004358</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22806.WR16980.454-1293.645426080716.S</SUBMITTER_ID>
      <UUID>c67ca8a2-e1df-4f31-bfa8-3561c36779f4</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1293' containing sample 'BROAD:SEQUENCING_SAMPLE:17321.0'</TITLE>
    <STUDY_REF accession="SRP001620">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001620</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32439</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 2_2_4">Reference genome for the Human Microbiome Project Bacteroides_sp_2_2_4_ltp_BSCG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002785">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002785</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17321.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1293</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">CGGTCTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-03-18 21:57:32.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17321.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17321.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1535</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16980</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004359" center_name="BI" alias="2097117.WR36671.Solexa-166687.H0T24ADXX130627.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004359</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">2097117.WR36671.Solexa-166687.H0T24ADXX130627.P</SUBMITTER_ID>
      <UUID>b8513297-5a6c-42ab-b35b-ca4067bbba00</UUID>
    </IDENTIFIERS>
    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-166687' containing sample '7320.2012' from individual 'PTminsk0003'</TITLE>
    <STUDY_REF accession="SRP026513">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP026513</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA200330</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Mycobacterium tuberculosis minsk0007">TB ARC Belarus Mycobacterium_tuberculosis_minsk0007_ltp_L157_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Mycobacterium tuberculosis minsk0007 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS454496">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS454496</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN02086224</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Broad Institute">7320.2012</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-166687</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="5000" NOMINAL_SDEV="208.743785"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2013-06-28 19:57:08.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.17.20</VERSION>
          <NOTES>Sequencer Application 2.0.5</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>340232.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>broadinstitute.org:bsp.prod.sample:4GRF2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>DNA:DNA Somatic</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>product_order</TAG>
        <VALUE>PDO-1107</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>product_part_number</TAG>
        <VALUE>P-MCV-0001</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G36101</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>research_project</TAG>
        <VALUE>RP-114</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>root_sample_id</TAG>
        <VALUE>SM-3S1OM</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_id</TAG>
        <VALUE>SM-4GRF2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>36671</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004360" center_name="BI" alias="645994080717-4-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004360</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">645994080717-4-P</SUBMITTER_ID>
      <UUID>06440262-3876-4fe7-b2e0-fd3173f63961</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1317' containing sample 'BROAD:SEQUENCING_SAMPLE:17335.0'</TITLE>
    <STUDY_REF accession="SRP001613">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001613</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32419</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium gonidiaformans ATCC 25563">This strain will be used for comparative genome analysis Fusobacterium_gonidiaformans_ATCC_25563_ltp_FGAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002787">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002787</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17335.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1317</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="477"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-08-13 15:32:15.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17335.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17335.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1537</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16992</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004361" center_name="BI" alias="642557080811-1-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004361</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642557080811-1-P</SUBMITTER_ID>
      <UUID>a7c670f1-db4d-4055-a01f-0b5348abf24d</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1319' containing sample 'BROAD:SEQUENCING_SAMPLE:17333.0'</TITLE>
    <STUDY_REF accession="SRP001622">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001622</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32465</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Escherichia sp. 3_2_53FAA">Reference genome for the Human Microbiome Project Escherichia_sp_3_2_53FAA_ltp_ESAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002786">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002786</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17333.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1319</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="346"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-08-15 18:33:30.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
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        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17333.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17333.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1536</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16985</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004362" center_name="BI" alias="22824.WR16978.454-1288.645011080728.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004362</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22824.WR16978.454-1288.645011080728.S</SUBMITTER_ID>
      <UUID>453dae3e-b05b-4f13-9a88-d05112c8fdec</UUID>
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    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1288' containing sample 'BROAD:SEQUENCING_SAMPLE:16656.0'</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001625</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32433</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides fragilis 3_1_12">Reference genome for the Human Microbiome Project Bacteroides_fragilis_3_1_12_ltp_BFAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002788">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002788</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16656.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1288</LIBRARY_NAME>
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        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
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            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">CCGGTCGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16656.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1533</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16978</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004363" center_name="BI" alias="2097118.WR36671.Solexa-166682.H0T24ADXX130627.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004363</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">2097118.WR36671.Solexa-166682.H0T24ADXX130627.P</SUBMITTER_ID>
      <UUID>7d6e34fd-3b28-40ce-8851-3bedad20322d</UUID>
    </IDENTIFIERS>
    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-166682' containing sample '5316.2012' from individual 'PTminsk0002'</TITLE>
    <STUDY_REF accession="SRP026516">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP026516</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA200331</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Mycobacterium tuberculosis minsk0008">TB ARC Belarus Mycobacterium_tuberculosis_minsk0008_ltp_L158_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Mycobacterium tuberculosis minsk0008 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS454499">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS454499</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN02086225</EXTERNAL_ID>
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        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-166682</LIBRARY_NAME>
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        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="5000" NOMINAL_SDEV="191.61747"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
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      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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          <NOTES>Sequencer Application 2.0.5</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>340228.0</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>DNA:DNA Somatic</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>product_order</TAG>
        <VALUE>PDO-1107</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>product_part_number</TAG>
        <VALUE>P-MCV-0001</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G36100</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>research_project</TAG>
        <VALUE>RP-114</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>root_sample_id</TAG>
        <VALUE>SM-3S1OL</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_id</TAG>
        <VALUE>SM-4GREX</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>36671</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004364" center_name="BI" alias="22824.WR16978.454-1288.648965080826.S">
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      <PRIMARY_ID>SRX004364</PRIMARY_ID>
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    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1288' containing sample 'BROAD:SEQUENCING_SAMPLE:16656.0'</TITLE>
    <STUDY_REF accession="SRP001625">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001625</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32433</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides fragilis 3_1_12">Reference genome for the Human Microbiome Project Bacteroides_fragilis_3_1_12_ltp_BFAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002788">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002788</PRIMARY_ID>
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        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1288</LIBRARY_NAME>
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        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
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          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
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            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">CCGGTCGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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          <PROGRAM>454BaseCaller</PROGRAM>
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        </PIPE_SECTION>
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    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16656.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16656.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1533</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16978</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX004365</PRIMARY_ID>
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      <UUID>d0c91fcf-db96-4ff3-a222-96d18b809346</UUID>
    </IDENTIFIERS>
    <TITLE>Illumina RNA sequencing of transcriptome paired-end library 'Solexa-69042' containing 3 pooled Anopheles arabiensis samples</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP007996</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA72439</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Anopheles sp.">Anopheles 15 Genomes RNA portion sp_Whole_Transcriptome_Sequencing_Multispecies</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Anopheles arabiensis via complementary DNA</DESIGN_DESCRIPTION>
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        <POOL>
          <DEFAULT_MEMBER>
            <IDENTIFIERS>
              <PRIMARY_ID>SRS024887</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN00009845</EXTERNAL_ID>
              <EXTERNAL_ID namespace="NCBI">unidentified</EXTERNAL_ID>
            </IDENTIFIERS>
          </DEFAULT_MEMBER>
          <MEMBER proportion="0.3333333" member_name="tagged_357_CAGGAGCC" accession="SRS259215">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS259215</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">PRJNA173648.DONG5_RNA</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_357">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER proportion="0.3333333" member_name="tagged_367_CATAGCGA" accession="SRS259216">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS259216</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">PRJNA173648.ALBI9_RNA</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_367">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER proportion="0.3333333" member_name="tagged_880_TCTGGCGA" accession="SRS259214">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS259214</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">PRJNA173648.QUAD4_RNA</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_880">barcode</READ_LABEL>
          </MEMBER>
        </POOL>
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        <LIBRARY_NAME>Solexa-69042</LIBRARY_NAME>
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        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="542"/>
        </LIBRARY_LAYOUT>
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      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
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            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
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            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE base_coord="102" default_length="8">
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_357">CAGGAGCC</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_367">CATAGCGA</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_880">TCTGGCGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>110</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-08-27 07:22:26.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.12.4.2</VERSION>
          <NOTES>Sequencer Application 1.4.8</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Resequencing</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_ids</TAG>
        <VALUE>113323.0, 113324.0, 113325.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>library_type</TAG>
        <VALUE>cDNAShotgunReadTwoSense</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsids</TAG>
        <VALUE>broadinstitute.org:bsp.prod.sample:21U3E, broadinstitute.org:bsp.prod.sample:21U3F, broadinstitute.org:bsp.prod.sample:21U3G</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>RNA:Total RNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>projects</TAG>
        <VALUE>G14376, G14377, G14378</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>root_sample_ids</TAG>
        <VALUE>SM-1VT81, SM-1VT82, SM-1VT83</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_ids</TAG>
        <VALUE>SM-21U3E, SM-21U3F, SM-21U3G</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25946</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004366" center_name="BI" alias="642583080813-2-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004366</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642583080813-2-P</SUBMITTER_ID>
      <UUID>232f048d-3939-4675-9194-163bf16cd7d4</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1340' containing sample 'Fusobacterium sp. 4_1_13'</TITLE>
    <STUDY_REF accession="SRP001618">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001618</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32479</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. vincentii 4_1_13">Reference genome for the Human Microbiome Project Fusobacterium_nucleatum_subsp_vincentii_4_1_13_ltp_FSCG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002789">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002789</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 4_1_13</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1340</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="529"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-03-03 18:54:49.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17345.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17345.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1539</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16994</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004367" center_name="BI" alias="645064080815-4-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004367</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">645064080815-4-P</SUBMITTER_ID>
      <UUID>a0a16539-8aa2-4e22-acfd-88433a4fee82</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1392' containing sample 'BROAD:SEQUENCING_SAMPLE:16681.0'</TITLE>
    <STUDY_REF accession="SRP001679">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001679</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32483</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 7_1">Reference genome for the Human Microbiome Project Fusobacterium_nucleatum_subsp_animalis_7_1_ltp_FSDG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002782">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002782</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16681.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1392</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="337"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-08-15 21:42:12.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16681.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16681.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1541</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17176</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004368" center_name="BI" alias="642557080926-3-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004368</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642557080926-3-S</SUBMITTER_ID>
      <UUID>1866eed4-c16c-4431-9d9e-732c8265b858</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1099' containing sample 'BROAD:SEQUENCING_SAMPLE:22682.0'</TITLE>
    <STUDY_REF accession="SRP001666">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001666</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32461</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Coprobacillus sp. D6">Reference genome for the Human Microbiome Project Coprobacillus_sp_D6_ltp_HMPREF0273_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002764">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002764</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22682.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1099</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-09-27 07:39:30.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22682.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22682.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1424</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16660</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004369" center_name="BI" alias="642557080926-4-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004369</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642557080926-4-S</SUBMITTER_ID>
      <UUID>d3772b71-1c22-4031-9a76-ebf711760a3d</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1099' containing sample 'BROAD:SEQUENCING_SAMPLE:22682.0'</TITLE>
    <STUDY_REF accession="SRP001666">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001666</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32461</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Coprobacillus sp. D6">Reference genome for the Human Microbiome Project Coprobacillus_sp_D6_ltp_HMPREF0273_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002764">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002764</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22682.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1099</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-09-27 07:39:30.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22682.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22682.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1424</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16660</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004370" center_name="BI" alias="22787.WR17615.454-1823.646406081111.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004370</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22787.WR17615.454-1823.646406081111.S</SUBMITTER_ID>
      <UUID>429fb8de-b6ba-4b5e-9bdd-d00cf7f9ec8e</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1823' containing sample 'BROAD:SEQUENCING_SAMPLE:17326.0'</TITLE>
    <STUDY_REF accession="SRP001617">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001617</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41965</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Burkholderiales bacterium 1_1_47">Reference genome for Human Microbiome Project Burkholderiales_bacterium_1_1_47_ltp_HMPREF0189_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002790">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002790</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17326.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1823</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TTGGAGGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-24 16:32:01.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17326.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17326.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1738</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17615</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004371" center_name="BI" alias="22760.WR17629.454-1826.648110081112.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004371</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22760.WR17629.454-1826.648110081112.S</SUBMITTER_ID>
      <UUID>4f670954-ffb8-4d2d-b35b-c03389fd1321</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1826' containing sample 'BROAD:SEQUENCING_SAMPLE:17330.0'</TITLE>
    <STUDY_REF accession="SRP001638">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001638</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41961</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bilophila sp. 4_1_30">Reference genome for Human Microbiome project Bilophila_sp_4_1_30_ltp_HMPREF0178_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002791">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002791</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17330.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1826</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TTCTCAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-03-19 11:25:28.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17330.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17330.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1750</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17629</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004372" center_name="BI" alias="22780.WR17646.454-1793.648134081112.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004372</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22780.WR17646.454-1793.648134081112.S</SUBMITTER_ID>
      <UUID>402688c8-52d1-416a-9b69-e56c3d065303</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1793' containing sample 'BROAD:SEQUENCING_SAMPLE:16683.0'</TITLE>
    <STUDY_REF accession="SRP001636">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001636</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA40051</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Pediococcus acidilactici 7_4">Reference Genome for Human Microbiome Project Pediococcus_acidilactici_7_4_ltp_HMPREF9024_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002792">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002792</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16683.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1793</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TGGTGAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-03-19 01:37:55.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16683.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16683.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1758</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17646</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004373" center_name="BI" alias="22782.WR17647.454-1821.648134081112.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004373</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22782.WR17647.454-1821.648134081112.S</SUBMITTER_ID>
      <UUID>1327d18d-4e6e-4c26-bb5f-230dd68b5823</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1821' containing sample 'BROAD:SEQUENCING_SAMPLE:16691.0'</TITLE>
    <STUDY_REF accession="SRP001637">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001637</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41975</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Veillonella sp. 3_1_44">Reference genome for Human Microbiome Project Veillonella_sp_3_1_44_ltp_HMPREF0873_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002793">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002793</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16691.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1821</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TTGTGTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-03-19 01:37:55.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16691.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16691.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1759</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17647</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004374" center_name="BI" alias="22769.WR17642.454-1822.648134081112.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004374</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22769.WR17642.454-1822.648134081112.S</SUBMITTER_ID>
      <UUID>c73ed476-d779-4748-8434-d06ffa7b7bd5</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1822' containing sample 'BROAD:SEQUENCING_SAMPLE:16693.0'</TITLE>
    <STUDY_REF accession="SRP001277">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001277</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA39393</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Lachnospiraceae bacterium 4_1_37FAA">Reference genome for the Human Microbiome Project Lachnospiraceae_bacterium_4_1_37FAA_ltp_HMPREF0985_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002794">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002794</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16693.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1822</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">CCACGGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-03-19 01:37:55.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16693.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16693.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1756</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17642</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004375" center_name="BI" alias="22805.WR17648.454-1825.648134081112.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004375</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22805.WR17648.454-1825.648134081112.S</SUBMITTER_ID>
      <UUID>ebd93204-eca6-4fe4-93b9-6c4307a30789</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1825' containing sample 'BROAD:SEQUENCING_SAMPLE:16692.0'</TITLE>
    <STUDY_REF accession="SRP001649">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001649</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41977</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Veillonella sp. 6_1_27">Reference genome for Human Microbiome Project Veillonella_sp_6_1_27_ltp_HMPREF0874_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002795">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002795</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16692.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1825</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">AACTGTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-03-19 01:37:55.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16692.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16692.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1760</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17648</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004376" center_name="BI" alias="22753.WR17636.454-1827.646786081113.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004376</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22753.WR17636.454-1827.646786081113.S</SUBMITTER_ID>
      <UUID>f7a6a351-a1ac-4d76-8c9a-644b0dabe8a6</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1827' containing sample 'BROAD:SEQUENCING_SAMPLE:17334.0'</TITLE>
    <STUDY_REF accession="SRP001645">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001645</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41103</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Erysipelotrichaceae bacterium 5_2_54FAA">Reference genome for Human Microbiome Project Erysipelotrichaceae_bacterium_5_2_54FAA_ltp_HMPREF0863_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002796">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002796</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17334.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1827</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">CTTCCTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-24 16:26:08.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17334.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17334.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1753</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17636</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004377" center_name="BI" alias="22823.WR17619.454-1831.646786081113.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004377</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22823.WR17619.454-1831.646786081113.S</SUBMITTER_ID>
      <UUID>89a4a0e4-4174-4c5c-829f-b339a6da2b23</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1831' containing sample 'BROAD:SEQUENCING_SAMPLE:17350.0'</TITLE>
    <STUDY_REF accession="SRP001646">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001646</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA37947</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Streptococcus sp. 2_1_36FAA">Reference sequence for Human Microbiome Project Streptococcus_sp_2_1_36FAA_ltp_HMPREF0847_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002797">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002797</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17350.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1831</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">AACCAGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>12</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-24 16:26:08.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17350.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17350.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1740</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17619</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004378" center_name="BI" alias="647197081030-1-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004378</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">647197081030-1-P</SUBMITTER_ID>
      <UUID>f419364e-d510-4a31-9d29-99b1fb8f5752</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1083' containing sample 'BROAD:SEQUENCING_SAMPLE:16676.0'</TITLE>
    <STUDY_REF accession="SRP001629">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001629</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32463</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Escherichia sp. 1_1_43">Reference genome for the Human Microbiome Project Escherichia_sp_1_1_43_ltp_ESCG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002762">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002762</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16676.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1083</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="343"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-03-19 11:06:19.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16676.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16676.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1337</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17336</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004379" center_name="BI" alias="22813.WR17621.454-1784.648110081107.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004379</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22813.WR17621.454-1784.648110081107.S</SUBMITTER_ID>
      <UUID>84fa553d-7bf7-4e0a-9e6d-3c804686b968</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1784' containing sample 'Acidaminococcus sp. D21'</TITLE>
    <STUDY_REF accession="SRP001647">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001647</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA34117</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Acidaminococcus sp. D21">Reference genome for the Human Microbiome Project Acidaminococcus_sp_D21_ltp_ACDG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002798">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002798</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Acidaminococcus sp. D21</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1784</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TCCAGAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-03-19 11:25:28.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16654.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16654.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1745</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17621</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004380" center_name="BI" alias="22807.WR17622.454-1785.648110081107.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004380</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22807.WR17622.454-1785.648110081107.S</SUBMITTER_ID>
      <UUID>a44fd157-fabc-45f0-bbaa-115e26ccc340</UUID>
    </IDENTIFIERS>
    <TITLE>Sequencing of various genomes for the Human Microbiome Project on 454</TITLE>
    <STUDY_REF accession="SRP001641">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001641</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41949</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Alistipes sp. 10_1_37FAA">Reference genome for Human Microbiome Project Alistipes_sp_10_1_37FAA_ltp_HMPREF0068_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002799">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002799</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Alistipes sp. 10_1_37_FAA</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1785</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">AACACAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-03-19 11:25:28.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16655.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16655.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1746</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17622</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004381" center_name="BI" alias="23037.WR17638.454-1792.648110081107.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004381</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23037.WR17638.454-1792.648110081107.S</SUBMITTER_ID>
      <UUID>fd3852b7-4d3b-4456-abc5-163d688cdf5d</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1792' containing sample 'Fusobacterium sp. 11_3_2'</TITLE>
    <STUDY_REF accession="SRP001776">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001776</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA39559</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 11_3_2">Reference genome for Human Microbiome Project Fusobacterium_nucleatum_subsp_animalis_11_3_2_ltp_HMPREF0401_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002800">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002800</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 11_3_2</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1792</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">ACGAGAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-03-19 11:25:28.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16679.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16679.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1754</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17638</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004382" center_name="BI" alias="12055.WR17635.454-1901.648110081118.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004382</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">12055.WR17635.454-1901.648110081118.P</SUBMITTER_ID>
      <UUID>6f09b8f5-6d0d-4fef-94dc-5a8865dc0a36</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1901' containing sample 'BROAD:SEQUENCING_SAMPLE:16674.0'</TITLE>
    <STUDY_REF accession="SRP001866">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001866</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA39557</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Dorea sp. 4_1_36FAA">Reference genome for Human Microbiome Project Dorea_sp_4_1_36FAA_ltp_HMPREF0333_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002801">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002801</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16674.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1901</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="300"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">ATTCGTAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-17 14:55:18.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16674.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16674.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1752</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17635</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004383" center_name="BI" alias="22757.WR17634.454-1900.648110081118.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004383</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22757.WR17634.454-1900.648110081118.P</SUBMITTER_ID>
      <UUID>6a1e1e5e-d649-465c-aa9d-3911c850dbe4</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1900' containing sample 'BROAD:SEQUENCING_SAMPLE:16672.0'</TITLE>
    <STUDY_REF accession="SRP001633">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001633</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA42529</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Desulfovibrio sp. 3_1_syn3">Reference genome for Human Microbiome Project Desulfovibrio_sp_3_1_syn3_ltp_HMPREF0326_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002802">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002802</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16672.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1900</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="308"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">CCGACGTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-17 14:55:18.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16672.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16672.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1751</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17634</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004384" center_name="BI" alias="22765.WR17644.454-1841.648134081120.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004384</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22765.WR17644.454-1841.648134081120.S</SUBMITTER_ID>
      <UUID>e746e1b7-b1f9-4fd8-9ca4-288b511af4ca</UUID>
    </IDENTIFIERS>
    <TITLE>Sequencing of various genomes for the Human Microbiome Project on 454</TITLE>
    <STUDY_REF accession="SRP001635">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001635</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA38359</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Parabacteroides sp. D13">Reference genome for the Human Microbiome Project Parabacteroides_sp_D13_ltp_HMPREF0619_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002803">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002803</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.3_1_5_X</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1841</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TAGGAATC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-03-19 11:02:48.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22688.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22688.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1757</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17644</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004385" center_name="BI" alias="22760.WR17631.454-1904.646786081120.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004385</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22760.WR17631.454-1904.646786081120.P</SUBMITTER_ID>
      <UUID>49a6c60e-1557-4144-934d-e0c93d60849f</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1904' containing sample 'BROAD:SEQUENCING_SAMPLE:17330.0'</TITLE>
    <STUDY_REF accession="SRP001638">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001638</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41961</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bilophila sp. 4_1_30">Reference genome for Human Microbiome project Bilophila_sp_4_1_30_ltp_HMPREF0178_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002791">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002791</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17330.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1904</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="303"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">TAATTCCGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-24 16:06:54.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17330.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17330.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1750</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17631</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004386" center_name="BI" alias="22800.WR17652.454-1906.646786081120.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004386</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22800.WR17652.454-1906.646786081120.P</SUBMITTER_ID>
      <UUID>6c24f99d-9072-4c9c-b49a-96d2b806946e</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1906' containing sample 'BROAD:SEQUENCING_SAMPLE:17331.0'</TITLE>
    <STUDY_REF accession="SRP001648">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001648</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41973</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Enterobacteriaceae bacterium 9_2_54FAA">Reference genome for Human Microbiome Project Enterobacteriaceae_bacterium_9_2_54FAA_ltp_HMPREF0864_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002804">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002804</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17331.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1906</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="303"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">TGTCCGGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-24 16:06:54.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17331.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17331.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1762</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17652</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004387" center_name="BI" alias="22802.WR17630.454-1936.646786081120.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004387</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22802.WR17630.454-1936.646786081120.P</SUBMITTER_ID>
      <UUID>d82884f9-64b2-4348-b587-71a55c53543d</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1936' containing sample 'Bilophila wadsworthia 3_1_6'</TITLE>
    <STUDY_REF accession="SRP001640">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001640</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41963</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bilophila wadsworthia 3_1_6">Reference genome for Human Microbiome Project Bilophila_wadsworthia_3_1_6_ltp_HMPREF0179_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002805">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002805</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Bilophila wadsworthia 3_1_6</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1936</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="291"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">TCCGTCCGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-24 16:06:54.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16666.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16666.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1749</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17630</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004388" center_name="BI" alias="22769.WR17643.454-1937.646786081120.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004388</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22769.WR17643.454-1937.646786081120.P</SUBMITTER_ID>
      <UUID>2fbc12e0-7410-4b78-ac51-670ec8ac0a85</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1937' containing sample 'BROAD:SEQUENCING_SAMPLE:16693.0'</TITLE>
    <STUDY_REF accession="SRP001277">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001277</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA39393</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Lachnospiraceae bacterium 4_1_37FAA">Reference genome for the Human Microbiome Project Lachnospiraceae_bacterium_4_1_37FAA_ltp_HMPREF0985_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002794">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002794</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16693.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1937</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="338"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">AATAACGAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-24 16:06:54.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16693.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16693.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1756</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17643</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004389" center_name="BI" alias="22766.WR17796.454-1920.646281081121.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004389</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22766.WR17796.454-1920.646281081121.S</SUBMITTER_ID>
      <UUID>6a79c073-473c-4ff9-9935-18f79415ccf5</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1920' containing sample 'BROAD:SEQUENCING_SAMPLE:22495.0'</TITLE>
    <STUDY_REF accession="SRP001670">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001670</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA42545</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Lactobacillus johnsonii 135-1-CHN">Reference genome for Human Microbiome Project Lactobacillus_johnsonii_135_1_CHN_ltp_HMPREF5275_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002806">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002806</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22495.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1920</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TTATCGGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-03-06 13:41:26.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22495.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22495.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1809</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17796</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004390" center_name="BI" alias="22757.WR17632.454-1789.646345081124.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004390</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22757.WR17632.454-1789.646345081124.S</SUBMITTER_ID>
      <UUID>7d9b8105-56f2-430b-8f6d-ae69b6b94f6f</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1789' containing sample 'BROAD:SEQUENCING_SAMPLE:16672.0'</TITLE>
    <STUDY_REF accession="SRP001633">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001633</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA42529</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Desulfovibrio sp. 3_1_syn3">Reference genome for Human Microbiome Project Desulfovibrio_sp_3_1_syn3_ltp_HMPREF0326_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002802">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002802</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16672.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1789</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TGTCGGAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-17 15:19:07.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16672.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16672.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1751</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17632</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004391" center_name="BI" alias="22765.WR17644.454-1841.645759081124.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004391</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22765.WR17644.454-1841.645759081124.S</SUBMITTER_ID>
      <UUID>16dfa31c-94c1-46fe-adb6-54651dff29c0</UUID>
    </IDENTIFIERS>
    <TITLE>Sequencing of various genomes for the Human Microbiome Project on 454</TITLE>
    <STUDY_REF accession="SRP001635">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001635</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA38359</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Parabacteroides sp. D13">Reference genome for the Human Microbiome Project Parabacteroides_sp_D13_ltp_HMPREF0619_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002803">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002803</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.3_1_5_X</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1841</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TAGGAATC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-24 15:52:56.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22688.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22688.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1757</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17644</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004392" center_name="BI" alias="22783.WR17617.454-1837.648778081124.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004392</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22783.WR17617.454-1837.648778081124.S</SUBMITTER_ID>
      <UUID>9781632f-84b3-4b96-a9d2-25ca7e919d4a</UUID>
    </IDENTIFIERS>
    <TITLE>Sequencing of various genomes for the Human Microbiome Project on 454</TITLE>
    <STUDY_REF accession="SRP001616">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001616</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA42541</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Ruminococcaceae bacterium D16">Reference genome for Human Microbiome Project Ruminococcaceae_bacterium_D16_ltp_HMPREF0866_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002807">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002807</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.4_1_38B</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1837</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TATTCGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-24 15:45:31.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22680.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22680.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1739</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17617</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004393" center_name="BI" alias="22809.WR17626.454-1812.647176081125.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004393</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22809.WR17626.454-1812.647176081125.P</SUBMITTER_ID>
      <UUID>92dfc76b-944e-40fc-922d-dd294a8df8e6</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1812' containing sample 'BROAD:SEQUENCING_SAMPLE:16657.0'</TITLE>
    <STUDY_REF accession="SRP001642">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001642</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41955</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 1_1_30">Reference genome for Human Microbiome Project Bacteroides_sp_1_1_30_ltp_HMPREF0127_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002808">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002808</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16657.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1812</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="423"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">TCCTTCCAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-17 15:06:11.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16657.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16657.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1747</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17626</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004394" center_name="BI" alias="22782.WR17650.454-1960.648110081125.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004394</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22782.WR17650.454-1960.648110081125.P</SUBMITTER_ID>
      <UUID>2c71756d-81de-4f9a-9d38-e442cacc4ca1</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1960' containing sample 'BROAD:SEQUENCING_SAMPLE:16691.0'</TITLE>
    <STUDY_REF accession="SRP001637">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001637</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41975</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Veillonella sp. 3_1_44">Reference genome for Human Microbiome Project Veillonella_sp_3_1_44_ltp_HMPREF0873_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002793">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002793</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16691.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1960</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="290"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">AACGAGGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-24 15:22:01.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16691.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16691.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1759</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17650</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004395" center_name="BI" alias="22753.WR17637.454-1968.648110081125.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004395</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22753.WR17637.454-1968.648110081125.P</SUBMITTER_ID>
      <UUID>3863a40e-3546-4e47-87f3-404a8167b4e3</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1968' containing sample 'BROAD:SEQUENCING_SAMPLE:17334.0'</TITLE>
    <STUDY_REF accession="SRP001645">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001645</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41103</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Erysipelotrichaceae bacterium 5_2_54FAA">Reference genome for Human Microbiome Project Erysipelotrichaceae_bacterium_5_2_54FAA_ltp_HMPREF0863_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002796">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002796</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17334.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1968</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="319"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">TGACGAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>12</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-24 15:22:01.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17334.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17334.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1753</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17637</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004396" center_name="BI" alias="23039.WR17639.454-1969.648110081125.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004396</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23039.WR17639.454-1969.648110081125.P</SUBMITTER_ID>
      <UUID>9ab9374e-7ccc-466f-b5da-e771fdc602f2</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1969' containing sample 'Fusobacterium sp. 3_1_33'</TITLE>
    <STUDY_REF accession="SRP001771">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001771</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA38519</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 3_1_33">This strain will be used for comparative genome analysis Fusobacterium_nucleatum_subsp_animalis_3_1_33_ltp_HMPREF0406_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002809">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002809</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 3_1_33</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1969</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="319"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">CAACCGTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-24 15:22:01.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17342.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17342.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G3090</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17639</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004397" center_name="BI" alias="22771.WR17641.454-1970.648110081125.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004397</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22771.WR17641.454-1970.648110081125.P</SUBMITTER_ID>
      <UUID>5a0a8f1f-c581-4c6b-9c49-1431a30f4c7c</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1970' containing sample 'BROAD:SEQUENCING_SAMPLE:17349.0'</TITLE>
    <STUDY_REF accession="SRP001644">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001644</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA40049</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Klebsiella sp. 1_1_55">Reference Genome for the Human Microbiome Project Klebsiella_sp_1_1_55_ltp_HMPREF0485_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002810">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002810</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17349.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1970</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="319"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">TGGTTGGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-24 15:22:01.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17349.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17349.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1755</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17641</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004398" center_name="BI" alias="22804.WR17627.454-1903.632377081125.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004398</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22804.WR17627.454-1903.632377081125.P</SUBMITTER_ID>
      <UUID>b22fb5ab-8a51-4e07-9969-a015eb3894e7</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1903' containing sample 'BROAD:SEQUENCING_SAMPLE:17325.0'</TITLE>
    <STUDY_REF accession="SRP001639">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001639</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41959</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bifidobacterium sp. 12_1_47BFAA">Reference genome for Human Microbiome Project Bifidobacterium_sp_12_1_47BFAA_ltp_HMPREF0177_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002811">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002811</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17325.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1903</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="303"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">TATCAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>12</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-17 15:25:21.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17325.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17325.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1748</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17627</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004399" center_name="BI" alias="22805.WR17651.454-1908.632377081125.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004399</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22805.WR17651.454-1908.632377081125.P</SUBMITTER_ID>
      <UUID>671e4b07-699f-4894-b475-21e3a995e867</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1908' containing sample 'BROAD:SEQUENCING_SAMPLE:16692.0'</TITLE>
    <STUDY_REF accession="SRP001649">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001649</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41977</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Veillonella sp. 6_1_27">Reference genome for Human Microbiome Project Veillonella_sp_6_1_27_ltp_HMPREF0874_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002795">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002795</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16692.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1908</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="303"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">AACGGAGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-17 15:25:21.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16692.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16692.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1760</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17651</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004400" center_name="BI" alias="22766.WR17799.454-1938.632377081125.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004400</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22766.WR17799.454-1938.632377081125.P</SUBMITTER_ID>
      <UUID>b550fc00-964d-4a41-ad53-673f420b4866</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1938' containing sample 'BROAD:SEQUENCING_SAMPLE:22495.0'</TITLE>
    <STUDY_REF accession="SRP001670">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001670</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA42545</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Lactobacillus johnsonii 135-1-CHN">Reference genome for Human Microbiome Project Lactobacillus_johnsonii_135_1_CHN_ltp_HMPREF5275_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002806">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002806</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22495.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1938</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="323"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">ACCGTAATC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-17 15:25:21.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22495.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22495.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1809</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17799</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004401" center_name="BI" alias="22780.WR17649.454-1939.632377081125.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004401</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22780.WR17649.454-1939.632377081125.P</SUBMITTER_ID>
      <UUID>e3c2c369-bbe6-470a-a562-373686692d70</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1939' containing sample 'BROAD:SEQUENCING_SAMPLE:16683.0'</TITLE>
    <STUDY_REF accession="SRP001636">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001636</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA40051</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Pediococcus acidilactici 7_4">Reference Genome for Human Microbiome Project Pediococcus_acidilactici_7_4_ltp_HMPREF9024_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002792">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002792</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16683.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1939</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="307"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">AACTCGAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-17 15:25:21.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16683.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16683.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1758</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17649</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004402" center_name="BI" alias="646786081126-1-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004402</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">646786081126-1-P</SUBMITTER_ID>
      <UUID>9925e414-cb74-4473-a52e-c839cdb9975a</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1150' containing sample 'BROAD:SEQUENCING_SAMPLE:22681.0'</TITLE>
    <STUDY_REF accession="SRP001685">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001685</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32459</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Clostridium sp. D5">Reference genome for the Human Microbiome Project Clostridium_sp_D5_ltp_HMPREF0240_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002769">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002769</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22681.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1150</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="396"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-03-06 13:42:24.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22681.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22681.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1417</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17556</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004403" center_name="BI" alias="22783.WR17618.454-1971.646786081126.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004403</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22783.WR17618.454-1971.646786081126.P</SUBMITTER_ID>
      <UUID>f9616aaf-73ff-47c8-babe-9169baca7d97</UUID>
    </IDENTIFIERS>
    <TITLE>Sequencing of various genomes for the Human Microbiome Project on 454</TITLE>
    <STUDY_REF accession="SRP001616">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001616</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA42541</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Ruminococcaceae bacterium D16">Reference genome for Human Microbiome Project Ruminococcaceae_bacterium_D16_ltp_HMPREF0866_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002807">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002807</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.4_1_38B</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1971</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="319"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">TCGCGGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>12</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-03-06 13:42:24.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22680.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22680.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1739</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17618</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004404" center_name="BI" alias="22823.WR17620.454-1973.646786081126.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004404</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22823.WR17620.454-1973.646786081126.P</SUBMITTER_ID>
      <UUID>0670f486-04e8-4d5b-adaa-49f392a9a960</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1973' containing sample 'BROAD:SEQUENCING_SAMPLE:17350.0'</TITLE>
    <STUDY_REF accession="SRP001646">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001646</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA37947</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Streptococcus sp. 2_1_36FAA">Reference sequence for Human Microbiome Project Streptococcus_sp_2_1_36FAA_ltp_HMPREF0847_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002797">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002797</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17350.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1973</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="319"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="6" base_coord="5">
              <BASECALL min_match="6" max_mismatch="0" match_edge="full">TCACAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>11</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-03-06 13:42:24.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17350.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17350.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1740</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17620</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004405" center_name="BI" alias="22765.WR17645.454-1963.648134081126.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004405</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22765.WR17645.454-1963.648134081126.P</SUBMITTER_ID>
      <UUID>59bbe5e7-28fd-45b4-991d-a15a5598f94f</UUID>
    </IDENTIFIERS>
    <TITLE>Sequencing of various genomes for the Human Microbiome Project on 454</TITLE>
    <STUDY_REF accession="SRP001635">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001635</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA38359</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Parabacteroides sp. D13">Reference genome for the Human Microbiome Project Parabacteroides_sp_D13_ltp_HMPREF0619_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002803">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002803</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.3_1_5_X</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1963</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="315"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="6" base_coord="5">
              <BASECALL min_match="6" max_mismatch="0" match_edge="full">CGCAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>11</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-06 16:14:41.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22688.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22688.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1757</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17645</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004406" center_name="BI" alias="22771.WR17640.454-1829.647953081215.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004406</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22771.WR17640.454-1829.647953081215.S</SUBMITTER_ID>
      <UUID>c0f55f78-24c6-445f-858a-c3f6aad107dd</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1829' containing sample 'BROAD:SEQUENCING_SAMPLE:17349.0'</TITLE>
    <STUDY_REF accession="SRP001644">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001644</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA40049</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Klebsiella sp. 1_1_55">Reference Genome for the Human Microbiome Project Klebsiella_sp_1_1_55_ltp_HMPREF0485_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002810">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002810</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17349.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1829</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">CGGTCTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-03-19 11:05:34.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17349.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17349.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1755</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17640</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004407" center_name="BI" alias="23037.WR17639.454-1815.648878081215.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004407</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23037.WR17639.454-1815.648878081215.P</SUBMITTER_ID>
      <UUID>d2afadf3-bed5-498d-9afb-017aec445d7e</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1815' containing sample 'Fusobacterium sp. 11_3_2'</TITLE>
    <STUDY_REF accession="SRP001776">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001776</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA39559</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 11_3_2">Reference genome for Human Microbiome Project Fusobacterium_nucleatum_subsp_animalis_11_3_2_ltp_HMPREF0401_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002800">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002800</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 11_3_2</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1815</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="338"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">AAGCCGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>12</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-24 14:16:38.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16679.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16679.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1754</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17639</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004408" center_name="BI" alias="22787.WR17616.454-1905.648878081216.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004408</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22787.WR17616.454-1905.648878081216.P</SUBMITTER_ID>
      <UUID>af1de2d1-a6e4-4112-8440-0f3b6578f35e</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1905' containing sample 'BROAD:SEQUENCING_SAMPLE:17326.0'</TITLE>
    <STUDY_REF accession="SRP001617">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001617</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41965</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Burkholderiales bacterium 1_1_47">Reference genome for Human Microbiome Project Burkholderiales_bacterium_1_1_47_ltp_HMPREF0189_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002790">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002790</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17326.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1905</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="303"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">CAAGAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>12</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-24 14:05:21.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17326.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17326.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1738</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17616</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004409" center_name="BI" alias="23044.WR17794.454-1988.648878081216.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004409</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23044.WR17794.454-1988.648878081216.S</SUBMITTER_ID>
      <UUID>ad484088-d091-4c73-a8f1-083fb09a1193</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1988' containing sample 'BROAD:SEQUENCING_SAMPLE:22493.0'</TITLE>
    <STUDY_REF accession="SRP001779">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001779</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA42535</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Lactobacillus gasseri SJ-9E-US">Reference genome for Human Microbiome Project Lactobacillus_gasseri_SJ_9E_US_ltp_HMPREF0516_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002812">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002812</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22493.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1988</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TTGTGTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-24 14:05:21.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22493.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22493.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1808</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17794</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004410" center_name="BI" alias="23045.WR17794.454-1990.647953081217.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004410</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23045.WR17794.454-1990.647953081217.S</SUBMITTER_ID>
      <UUID>3e77d601-55fe-4350-984a-6d951739e341</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1990' containing sample 'BROAD:SEQUENCING_SAMPLE:22494.0'</TITLE>
    <STUDY_REF accession="SRP001767">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001767</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA42543</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Lactobacillus gasseri SV-16A-US">Reference genome for Human Microbiome Project Lactobacillus_gasseri_SV_16A_US_ltp_HMPREF5175_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002813">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002813</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22494.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1990</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TTGGAGGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-24 13:50:14.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22494.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22494.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G3094</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17794</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004411" center_name="BI" alias="23042.WR17798.454-2071.649067081217.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004411</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23042.WR17798.454-2071.649067081217.P</SUBMITTER_ID>
      <UUID>c43db02d-c6a1-4080-b1e6-55d841986ffa</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-2071' containing sample 'BROAD:SEQUENCING_SAMPLE:22489.0'</TITLE>
    <STUDY_REF accession="SRP001773">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001773</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA37951</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Lactobacillus crispatus MV-1A-US">Reference sequence for Human Microbiome Project Lactobacillus_crispatus_MV_1A_US_ltp_HMPREF0507_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002814">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002814</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22489.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2071</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="293"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">ACCAACCAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-24 13:44:31.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22489.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22489.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G3092</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17798</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004412" center_name="BI" alias="23043.WR17795.454-1991.648878081217.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004412</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23043.WR17795.454-1991.648878081217.S</SUBMITTER_ID>
      <UUID>ff1d68b3-fd22-4f6f-a872-ec7a5bcdd593</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1991' containing sample 'BROAD:SEQUENCING_SAMPLE:22488.0'</TITLE>
    <STUDY_REF accession="SRP001772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001772</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA42533</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Lactobacillus crispatus SJ-3C-US">Reference genome for Human Microbiome Project Lactobacillus_crispatus_SJ_3C_US_ltp_HMPREF0509_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002815">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002815</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22488.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1991</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">ACTCCTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>12</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-24 13:57:44.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22488.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22488.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G3093</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17795</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004413" center_name="BI" alias="23042.WR17795.454-1992.648878081217.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004413</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23042.WR17795.454-1992.648878081217.S</SUBMITTER_ID>
      <UUID>b2599d48-aabf-443f-b6cd-49406b72c1e0</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1992' containing sample 'BROAD:SEQUENCING_SAMPLE:22489.0'</TITLE>
    <STUDY_REF accession="SRP001773">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001773</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA37951</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Lactobacillus crispatus MV-1A-US">Reference sequence for Human Microbiome Project Lactobacillus_crispatus_MV_1A_US_ltp_HMPREF0507_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002814">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002814</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22489.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1992</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TTCTCAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-24 13:57:44.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22489.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22489.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G3092</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17795</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004414" center_name="BI" alias="23041.WR17795.454-1993.649075081217.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004414</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23041.WR17795.454-1993.649075081217.S</SUBMITTER_ID>
      <UUID>8ea3914c-47ed-42fa-9158-3e8b864e59c2</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1993' containing sample 'BROAD:SEQUENCING_SAMPLE:22490.0'</TITLE>
    <STUDY_REF accession="SRP001778">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001778</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA38361</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Lactobacillus crispatus 125-2-CHN">Reference genome for the Human Microbiome Project Lactobacillus_crispatus_125_2_CHN_ltp_HMPREF5045_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002816">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002816</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22490.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1993</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">CTTCCTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-24 10:58:29.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22490.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22490.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1807</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17795</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004415" center_name="BI" alias="23041.WR17798.454-2106.647953081218.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004415</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23041.WR17798.454-2106.647953081218.P</SUBMITTER_ID>
      <UUID>539d5302-69d3-4fce-b109-ff9a1f046da2</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-2106' containing sample 'BROAD:SEQUENCING_SAMPLE:22490.0'</TITLE>
    <STUDY_REF accession="SRP001778">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001778</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA38361</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Lactobacillus crispatus 125-2-CHN">Reference genome for the Human Microbiome Project Lactobacillus_crispatus_125_2_CHN_ltp_HMPREF5045_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002816">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002816</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22490.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2106</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="338"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">ACCGCGGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-24 11:48:09.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22490.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22490.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1807</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17798</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004416" center_name="BI" alias="23045.WR17797.454-2043.648102081219.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004416</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23045.WR17797.454-2043.648102081219.P</SUBMITTER_ID>
      <UUID>b97bba8c-a5dd-4c79-903f-0bf9783829c1</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-2043' containing sample 'BROAD:SEQUENCING_SAMPLE:22494.0'</TITLE>
    <STUDY_REF accession="SRP001767">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001767</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA42543</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Lactobacillus gasseri SV-16A-US">Reference genome for Human Microbiome Project Lactobacillus_gasseri_SV_16A_US_ltp_HMPREF5175_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002813">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002813</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22494.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2043</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="338"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">ACCTTGGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-03-19 00:59:51.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22494.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22494.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G3094</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17797</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004417" center_name="BI" alias="23044.WR17797.454-2062.648102081219.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004417</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23044.WR17797.454-2062.648102081219.P</SUBMITTER_ID>
      <UUID>f4607dd4-54c3-461a-90f0-ee4f1bc055cf</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-2062' containing sample 'BROAD:SEQUENCING_SAMPLE:22493.0'</TITLE>
    <STUDY_REF accession="SRP001779">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001779</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA42535</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Lactobacillus gasseri SJ-9E-US">Reference genome for Human Microbiome Project Lactobacillus_gasseri_SJ_9E_US_ltp_HMPREF0516_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002812">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002812</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22493.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2062</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="409"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">ACGTGGAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-03-19 00:59:51.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22493.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22493.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1808</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17797</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004418" center_name="BI" alias="12055.WR17633.454-1791.647946081224.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004418</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">12055.WR17633.454-1791.647946081224.S</SUBMITTER_ID>
      <UUID>c5fffadd-18df-48cd-9608-b49631306e5a</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1791' containing sample 'BROAD:SEQUENCING_SAMPLE:16674.0'</TITLE>
    <STUDY_REF accession="SRP001866">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001866</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA39557</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Dorea sp. 4_1_36FAA">Reference genome for Human Microbiome Project Dorea_sp_4_1_36FAA_ltp_HMPREF0333_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002801">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002801</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16674.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1791</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">AGGTTGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-24 11:42:11.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16674.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16674.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1752</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17633</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004419" center_name="BI" alias="646657081231-1-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004419</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">646657081231-1-P</SUBMITTER_ID>
      <UUID>f77a14a1-1b64-417b-8c74-75e0b788d26c</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1150' containing sample 'BROAD:SEQUENCING_SAMPLE:22681.0'</TITLE>
    <STUDY_REF accession="SRP001685">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001685</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32459</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Clostridium sp. D5">Reference genome for the Human Microbiome Project Clostridium_sp_D5_ltp_HMPREF0240_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002769">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002769</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22681.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1150</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="396"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-01-01 18:40:32.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22681.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22681.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1417</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16648</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004420" center_name="BI" alias="22783.WR17618.454-1971.646657081231.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004420</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22783.WR17618.454-1971.646657081231.P</SUBMITTER_ID>
      <UUID>54a6bb91-086e-42b9-aad2-3ebbc28318ec</UUID>
    </IDENTIFIERS>
    <TITLE>Sequencing of various genomes for the Human Microbiome Project on 454</TITLE>
    <STUDY_REF accession="SRP001616">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001616</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA42541</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Ruminococcaceae bacterium D16">Reference genome for Human Microbiome Project Ruminococcaceae_bacterium_D16_ltp_HMPREF0866_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002807">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002807</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.4_1_38B</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1971</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="319"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">TCGCGGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>12</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-01-01 18:40:32.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22680.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22680.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1739</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17618</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004421" center_name="BI" alias="23044.WR17797.454-2062.646657081231.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004421</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23044.WR17797.454-2062.646657081231.P</SUBMITTER_ID>
      <UUID>c2c6c555-e527-4ea2-99d1-da6a1ffed927</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-2062' containing sample 'BROAD:SEQUENCING_SAMPLE:22493.0'</TITLE>
    <STUDY_REF accession="SRP001779">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001779</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA42535</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Lactobacillus gasseri SJ-9E-US">Reference genome for Human Microbiome Project Lactobacillus_gasseri_SJ_9E_US_ltp_HMPREF0516_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002812">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002812</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22493.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2062</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="409"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">ACGTGGAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-01-01 18:40:32.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22493.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22493.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1808</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17797</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004422" center_name="BI" alias="23047.WR18162.454-2246.646654090109.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004422</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23047.WR18162.454-2246.646654090109.P</SUBMITTER_ID>
      <UUID>0013c1dd-02bf-40bd-8f7d-27308fe6039e</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-2246' containing sample 'BROAD:SEQUENCING_SAMPLE:17319.0'</TITLE>
    <STUDY_REF accession="SRP001766">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001766</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA38349</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 2_1_22">Reference genome for the Human Microbiome Project Bacteroides_sp_2_1_22_ltp_HMPREF0102_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002817">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002817</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17319.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2246</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="313"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">AATAACGAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-23 14:03:45.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17319.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17319.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G3095</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>18162</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004423" center_name="BI" alias="23046.WR18162.454-2248.646654090109.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004423</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23046.WR18162.454-2248.646654090109.P</SUBMITTER_ID>
      <UUID>563225ba-67ea-4c5a-85b8-94e838d7cf97</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-2248' containing sample 'BROAD:SEQUENCING_SAMPLE:17318.0'</TITLE>
    <STUDY_REF accession="SRP001763">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001763</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA38347</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 2_1_16">Reference genome for the Human Microbiome Project Bacteroides_sp_2_1_16_ltp_HMPREF0101_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002818">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002818</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17318.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2248</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="320"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">AACGGAGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-23 14:03:45.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17318.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17318.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1858</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>18162</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004424" center_name="BI" alias="23050.WR18162.454-2281.648974090113.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004424</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23050.WR18162.454-2281.648974090113.P</SUBMITTER_ID>
      <UUID>7d450812-2848-40f5-baa5-5de9b4d0d4f3</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-2281' containing sample 'BROAD:SEQUENCING_SAMPLE:17320.0'</TITLE>
    <STUDY_REF accession="SRP001769">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001769</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA38351</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 2_1_33B">Reference genome for the Human Microbiome Project Bacteroides_sp_2_1_33B_ltp_HMPREF0103_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002819">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002819</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17320.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2281</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="311"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">TATCAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>12</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-23 11:17:51.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17320.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17320.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G3096</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>18162</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004425" center_name="BI" alias="23048.WR18187.454-2280.648974090113.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004425</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23048.WR18187.454-2280.648974090113.P</SUBMITTER_ID>
      <UUID>ebee0220-bb22-437b-94a6-c2727295d63b</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-2280' containing sample '2_2_43B_FAA'</TITLE>
    <STUDY_REF accession="SRP001764">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001764</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA38355</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. D20">Reference genome for the Human Microbiome Project Bacteroides_sp_D20_ltp_HMPREF0969_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002820">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002820</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.2_2_43B_FAA</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2280</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="323"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">TGACGAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>12</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-23 11:17:51.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22679.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22679.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
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        <VALUE>18187</VALUE>
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  <EXPERIMENT accession="SRX004426" center_name="BI" alias="23040.WR18164.454-2223.646681090107.P">
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      <PRIMARY_ID>SRX004426</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23040.WR18164.454-2223.646681090107.P</SUBMITTER_ID>
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    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-2223' containing sample 'BROAD:SEQUENCING_SAMPLE:17343.0'</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001770</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA38357</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. vincentii 3_1_36A2">This strain will be used for comparative genome analysis Fusobacterium_nucleatum_subsp_vincentii_3_1_36A2_ltp_HMPREF0946_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002821">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002821</PRIMARY_ID>
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        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
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        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
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          <PAIRED NOMINAL_LENGTH="300"/>
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      <SPOT_DESCRIPTOR>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
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            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
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          <READ_SPEC>
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          <READ_SPEC>
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              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
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            <RELATIVE_ORDER follows_read_index="3"/>
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        </SPOT_DECODE_SPEC>
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    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
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    <PROCESSING>
      <PIPELINE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G3091</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>18164</VALUE>
      </EXPERIMENT_ATTRIBUTE>
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  </EXPERIMENT>
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    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-2222' containing sample 'BROAD:SEQUENCING_SAMPLE:16661.0'</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001765</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA38353</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 3_1_33FAA">Reference genome for the Human Microbiome Project Bacteroides_sp_3_1_33FAA_ltp_HMPREF0105_WGS_Monoisolate</EXTERNAL_ID>
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    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS002822</PRIMARY_ID>
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        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
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          <READ_SPEC>
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            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">AACGAGGC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
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            <READ_TYPE>Forward</READ_TYPE>
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          <READ_SPEC>
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            <READ_TYPE>Linker</READ_TYPE>
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              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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    <PROCESSING>
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        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>18162</VALUE>
      </EXPERIMENT_ATTRIBUTE>
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    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-243861' containing sample '12611_ST_08_1' from individual '12611'</TITLE>
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      <IDENTIFIERS>
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        <EXTERNAL_ID namespace="Broad Institute" label="Metagenome from Infant Gut Samples">Microbial composition of samples from infant gut human_metagenome_ltp_G9M_WGS_Environment</EXTERNAL_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA63661</EXTERNAL_ID>
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          <READ_SPEC>
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            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
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        <VALUE>DNA:DNA Genomic</VALUE>
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        <VALUE>PDO-1159</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>research_project</TAG>
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    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-2282' containing sample 'BROAD:SEQUENCING_SAMPLE:17323.0'</TITLE>
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        <PRIMARY_ID>SRP001768</PRIMARY_ID>
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        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 3_1_19">Reference genome for Human Microbiome Project Bacteroides_sp_3_1_19_ltp_HMPREF0104_WGS_Monoisolate</EXTERNAL_ID>
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    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
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          <SINGLE/>
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            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">AATGGTAC</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
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        </SPOT_DECODE_SPEC>
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      <LS454>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>G3097</VALUE>
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        <VALUE>18161</VALUE>
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    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end libraries 'Solexa-69001' and 'Pond-83907' containing 10 pooled Plasmodium falciparum UGK 815.1 samples</TITLE>
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      <DESIGN_DESCRIPTION>Illumina sequencing of Plasmodium falciparum UGK 815.1 via random selection</DESIGN_DESCRIPTION>
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              <SUBMITTER_ID namespace="BI">PRJNA67667.Uganda_Kampala6</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Tag_IlluminaHTKit10">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER proportion="0.1" member_name="Tag_IlluminaHTKit1_ATCACGAT" accession="SRS259219">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS259219</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">PRJNA67667.Uganda_Kampala4</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Tag_IlluminaHTKit1">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER proportion="0.1" member_name="Tag_IlluminaHTKit2_CGATGTAT" accession="SRS259224">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS259224</PRIMARY_ID>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Tag_IlluminaHTKit2">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER proportion="0.1" member_name="Tag_IlluminaHTKit3_TTAGGCAT" accession="SRS259218">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS259218</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">PRJNA67667.Uganda_Kampala5</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Tag_IlluminaHTKit3">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER proportion="0.1" member_name="Tag_IlluminaHTKit4_TGACCAAT" accession="SRS259227">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS259227</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">PRJNA67667.Uganda_Kampala2</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Tag_IlluminaHTKit4">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER proportion="0.1" member_name="Tag_IlluminaHTKit5_ACAGTGAT" accession="SRS259225">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS259225</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">PRJNA67667.Uganda_Kampala3</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Tag_IlluminaHTKit5">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER proportion="0.1" member_name="Tag_IlluminaHTKit6_GCCAATAT" accession="SRS259222">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS259222</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">PRJNA67667.Uganda_Kampala9</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Tag_IlluminaHTKit6">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER proportion="0.1" member_name="Tag_IlluminaHTKit7_CAGATCAT" accession="SRS259226">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS259226</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">PRJNA67667.Uganda_Kampala10</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Tag_IlluminaHTKit7">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER proportion="0.1" member_name="Tag_IlluminaHTKit8_ACTTGAAT" accession="SRS259223">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS259223</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">PRJNA67667.Uganda_Kampala8</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Tag_IlluminaHTKit8">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER proportion="0.1" member_name="Tag_IlluminaHTKit9_GATCAGAT" accession="SRS259220">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS259220</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">PRJNA67667.Uganda_Kampala7</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Tag_IlluminaHTKit9">barcode</READ_LABEL>
          </MEMBER>
        </POOL>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Pond-83907&amp;Solexa-69001</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_SDEV="27.790105" NOMINAL_LENGTH="169"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>210</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE base_coord="102" default_length="8">
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="Tag_IlluminaHTKit10">TAGCTTAT</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="Tag_IlluminaHTKit1">ATCACGAT</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="Tag_IlluminaHTKit2">CGATGTAT</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="Tag_IlluminaHTKit3">TTAGGCAT</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="Tag_IlluminaHTKit4">TGACCAAT</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="Tag_IlluminaHTKit5">ACAGTGAT</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="Tag_IlluminaHTKit6">GCCAATAT</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="Tag_IlluminaHTKit7">CAGATCAT</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="Tag_IlluminaHTKit8">ACTTGAAT</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="Tag_IlluminaHTKit9">GATCAGAT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>110</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-08-27 07:22:26.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.12.4.2</VERSION>
          <NOTES>Sequencer Application 1.4.8</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>AssemblyWithReference</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_ids</TAG>
        <VALUE>83294.1 83295.1 83296.1 83297.1 83298.1 83299.1 83300.1 83301.1 83302.1 83303.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>library_type</TAG>
        <VALUE>WholeGenomeShotgun</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsids</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:83294.1 BROAD:SEQUENCING_SAMPLE:83295.1 BROAD:SEQUENCING_SAMPLE:83296.1 BROAD:SEQUENCING_SAMPLE:83297.1 BROAD:SEQUENCING_SAMPLE:83298.1 BROAD:SEQUENCING_SAMPLE:83299.1 BROAD:SEQUENCING_SAMPLE:83300.1 BROAD:SEQUENCING_SAMPLE:83301.1 BROAD:SEQUENCING_SAMPLE:83302.1 BROAD:SEQUENCING_SAMPLE:83303.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>projects</TAG>
        <VALUE>G14308 G14309 G14310 G14311 G14312 G14313 G14314 G14315 G14316 G14317</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>Blood</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25848</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004431" center_name="BI" alias="23052.WR18161.454-2240.646786090115.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004431</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23052.WR18161.454-2240.646786090115.S</SUBMITTER_ID>
      <UUID>fc0af631-a19a-484c-957f-ec68f734c0d8</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-2240' containing sample 'BROAD:SEQUENCING_SAMPLE:16661.0'</TITLE>
    <STUDY_REF accession="SRP001765">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001765</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA38353</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 3_1_33FAA">Reference genome for the Human Microbiome Project Bacteroides_sp_3_1_33FAA_ltp_HMPREF0105_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002822">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002822</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16661.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2240</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TGCCGAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-23 11:10:08.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
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        <VALUE>Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16661.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16661.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G3098</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>18161</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004432" center_name="BI" alias="2064452.WR36671.Solexa-166685.H0T24ADXX130627.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004432</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">2064452.WR36671.Solexa-166685.H0T24ADXX130627.P</SUBMITTER_ID>
      <UUID>15ad728d-6d47-49c0-92fb-b56d9f7e1ba3</UUID>
    </IDENTIFIERS>
    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-166685' containing sample 'TKK-01-0076'</TITLE>
    <STUDY_REF accession="SRP021309">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP021309</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA198172</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Mycobacterium tuberculosis TKK-01-0076">TB ARC KRITH Mycobacterium_tuberculosis_TKK_01_0076_ltp_K898_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Mycobacterium Tuberculosis TKK-01-0076 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS415238">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS415238</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN02053807</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Broad Institute">TKK-01-0076</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-166685</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="5000" NOMINAL_SDEV="183.853475"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2013-06-28 19:57:08.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.17.20</VERSION>
          <NOTES>Sequencer Application 2.0.5</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>340231.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>broadinstitute.org:bsp.prod.sample:4GRF1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>DNA:DNA Somatic</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G28648</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>root_sample_id</TAG>
        <VALUE>SM-2Z9PQ</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_id</TAG>
        <VALUE>SM-4GRF1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>36671</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004433" center_name="BI" alias="23038.WR18164.454-2249.647204090116.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004433</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23038.WR18164.454-2249.647204090116.P</SUBMITTER_ID>
      <UUID>e1619c69-9c54-4d21-ab34-5eaa15315c3a</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-2249' containing sample 'BROAD:SEQUENCING_SAMPLE:27711.0'</TITLE>
    <STUDY_REF accession="SRP001774">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001774</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41563</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. vincentii 3_1_27">This strain will be used for comparative genome analysis Fusobacterium_nucleatum_subsp_vincentii_3_1_27_ltp_HMPREF0405_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002824">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002824</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:27711.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2249</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="331"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">TGTCCGGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-23 11:01:32.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>27711.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:27711.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G3089</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>18164</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004434" center_name="BI" alias="23040.WR18163.454-2241.647204090116.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004434</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23040.WR18163.454-2241.647204090116.S</SUBMITTER_ID>
      <UUID>19040134-17e0-4885-8e79-883be044261e</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-2241' containing sample 'BROAD:SEQUENCING_SAMPLE:17343.0'</TITLE>
    <STUDY_REF accession="SRP001770">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001770</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA38357</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. vincentii 3_1_36A2">This strain will be used for comparative genome analysis Fusobacterium_nucleatum_subsp_vincentii_3_1_36A2_ltp_HMPREF0946_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002821">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002821</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17343.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2241</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">AACCTGGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-23 11:01:32.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17343.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17343.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G3091</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>18163</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004435" center_name="BI" alias="23038.WR18163.454-2243.647204090116.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004435</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23038.WR18163.454-2243.647204090116.S</SUBMITTER_ID>
      <UUID>262833cd-4279-474e-89b8-badc97c5c09f</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-2243' containing sample 'BROAD:SEQUENCING_SAMPLE:27711.0'</TITLE>
    <STUDY_REF accession="SRP001774">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001774</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41563</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. vincentii 3_1_27">This strain will be used for comparative genome analysis Fusobacterium_nucleatum_subsp_vincentii_3_1_27_ltp_HMPREF0405_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002824">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002824</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:27711.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2243</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TTCGTGGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-23 11:01:32.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>27711.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:27711.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G3089</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>18163</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004436" center_name="BI" alias="23051.WR18162.454-2284.647946090120.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004436</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23051.WR18162.454-2284.647946090120.P</SUBMITTER_ID>
      <UUID>1863d4f0-9f09-41e7-9801-b7977862a060</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-2284' containing sample 'BROAD:SEQUENCING_SAMPLE:17323.0'</TITLE>
    <STUDY_REF accession="SRP001768">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001768</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41951</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 3_1_19">Reference genome for Human Microbiome Project Bacteroides_sp_3_1_19_ltp_HMPREF0104_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002823">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002823</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17323.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2284</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="314"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">CAAGAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>12</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-23 10:51:51.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17323.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17323.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G3097</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>18162</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004437" center_name="BI" alias="23047.WR18161.454-2244.647946090120.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004437</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23047.WR18161.454-2244.647946090120.S</SUBMITTER_ID>
      <UUID>49600203-d0b5-4db6-9b53-7a18d9b5894a</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-2244' containing sample 'BROAD:SEQUENCING_SAMPLE:17319.0'</TITLE>
    <STUDY_REF accession="SRP001766">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001766</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA38349</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 2_1_22">Reference genome for the Human Microbiome Project Bacteroides_sp_2_1_22_ltp_HMPREF0102_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002817">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002817</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17319.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2244</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TAGGAATC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-23 10:51:51.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17319.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17319.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G3095</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>18161</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004438" center_name="BI" alias="22807.WR17624.454-1804.646651090121.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004438</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22807.WR17624.454-1804.646651090121.P</SUBMITTER_ID>
      <UUID>9fe4348d-aa9b-44e6-9969-b2c93bc9be89</UUID>
    </IDENTIFIERS>
    <TITLE>Sequencing of various genomes for the Human Microbiome Project on 454</TITLE>
    <STUDY_REF accession="SRP001641">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001641</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41949</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Alistipes sp. 10_1_37FAA">Reference genome for Human Microbiome Project Alistipes_sp_10_1_37FAA_ltp_HMPREF0068_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002799">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002799</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Alistipes sp. 10_1_37_FAA</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1804</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="277"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">CCAACCGGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-03-18 23:49:31.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16655.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16655.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1746</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17624</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004439" center_name="BI" alias="23047.WR18161.454-2244.646651090121.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004439</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23047.WR18161.454-2244.646651090121.S</SUBMITTER_ID>
      <UUID>de649b14-e658-402a-836a-74ba903fb484</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-2244' containing sample 'BROAD:SEQUENCING_SAMPLE:17319.0'</TITLE>
    <STUDY_REF accession="SRP001766">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001766</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA38349</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 2_1_22">Reference genome for the Human Microbiome Project Bacteroides_sp_2_1_22_ltp_HMPREF0102_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002817">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002817</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17319.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2244</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TAGGAATC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-03-18 23:49:31.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17319.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17319.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G3095</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>18161</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004440" center_name="BI" alias="23046.WR18161.454-2242.646786090122.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004440</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23046.WR18161.454-2242.646786090122.S</SUBMITTER_ID>
      <UUID>1003601d-8b27-44b3-88b4-fd94fb632597</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-2242' containing sample 'BROAD:SEQUENCING_SAMPLE:17318.0'</TITLE>
    <STUDY_REF accession="SRP001763">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001763</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA38347</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 2_1_16">Reference genome for the Human Microbiome Project Bacteroides_sp_2_1_16_ltp_HMPREF0101_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002818">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002818</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17318.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2242</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TATTCGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-23 10:40:35.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17318.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17318.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1858</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>18161</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004441" center_name="BI" alias="2064457.WR36671.Solexa-166683.H0T24ADXX130627.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004441</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">2064457.WR36671.Solexa-166683.H0T24ADXX130627.P</SUBMITTER_ID>
      <UUID>6c460330-4653-4659-a106-10a576bc9b83</UUID>
    </IDENTIFIERS>
    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-166683' containing sample 'TKK-01-0082'</TITLE>
    <STUDY_REF accession="SRP026499">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP026499</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA198177</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Mycobacterium tuberculosis TKK-01-0082">TB ARC KRITH Mycobacterium_tuberculosis_TKK_01_0082_ltp_K903_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Mycobacterium Tuberculosis TKK-01-0082 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS454482">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS454482</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN02053812</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Broad Institute">TKK-01-0082</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-166683</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="5000" NOMINAL_SDEV="228.911136666667"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2013-06-28 19:57:08.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.17.20</VERSION>
          <NOTES>Sequencer Application 2.0.5</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>340229.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>broadinstitute.org:bsp.prod.sample:4GREY</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>DNA:DNA Somatic</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>product_order</TAG>
        <VALUE>PDO-1356</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>product_part_number</TAG>
        <VALUE>P-MCV-0001</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G38235</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>research_project</TAG>
        <VALUE>RP-114</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>root_sample_id</TAG>
        <VALUE>SM-2Z9PA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_id</TAG>
        <VALUE>SM-4GREY</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>36671</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004442" center_name="BI" alias="23050.WR18161.454-2245.646654090123.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004442</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23050.WR18161.454-2245.646654090123.S</SUBMITTER_ID>
      <UUID>80d1f25f-20d3-42b5-af13-fb5e1fd66ff7</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-2245' containing sample 'BROAD:SEQUENCING_SAMPLE:17320.0'</TITLE>
    <STUDY_REF accession="SRP001769">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001769</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA38351</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 2_1_33B">Reference genome for the Human Microbiome Project Bacteroides_sp_2_1_33B_ltp_HMPREF0103_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002819">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002819</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17320.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2245</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">CCGGCCAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-20 14:55:28.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17320.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17320.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G3096</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>18161</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004443" center_name="BI" alias="470818.WR25747.0109390182.748420110619.Kiev.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004443</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">470818.WR25747.0109390182.748420110619.Kiev.S</SUBMITTER_ID>
      <UUID>e1579c9b-6244-4be6-9d20-9e611b6d3f56</UUID>
    </IDENTIFIERS>
    <TITLE>Genome Sequencing and Assembly of E. coli O104:H4 strains</TITLE>
    <STUDY_REF accession="SRP008003">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP008003</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA68155</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Escherichia coli">Escherichia coli O104H4 str C236 11 genome sequencing ltp_EUBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Fragment library</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS259595">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS259595</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA68155.C236-11_Tube 2_A</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109390182</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>454</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">ACCGAATAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-06-20 15:18:07.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Alignment and Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>109828.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>broadinstitute.org:bsp.prod.sample:22NVS</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>DNA:DNA Somatic</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G14227</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>root_sample_id</TAG>
        <VALUE>SM-21X72</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_id</TAG>
        <VALUE>SM-22NVS</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25747</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004444" center_name="BI" alias="23051.WR18161.454-2282.648974090123.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004444</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23051.WR18161.454-2282.648974090123.S</SUBMITTER_ID>
      <UUID>30ec584e-0853-4105-90e5-adb74bf66955</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-2282' containing sample 'BROAD:SEQUENCING_SAMPLE:17323.0'</TITLE>
    <STUDY_REF accession="SRP001768">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001768</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41951</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 3_1_19">Reference genome for Human Microbiome Project Bacteroides_sp_3_1_19_ltp_HMPREF0104_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002823">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002823</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17323.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2282</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">AATGGTAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-20 14:35:20.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
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        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17323.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17323.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G3097</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>18161</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004445" center_name="BI" alias="235197.WR36419.Pond-243860.D26W1ACXX130609.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004445</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">235197.WR36419.Pond-243860.D26W1ACXX130609.P</SUBMITTER_ID>
      <UUID>0948154a-fc85-4a1b-9393-80954c15bfc7</UUID>
    </IDENTIFIERS>
    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-243860' containing sample '12331_SN_05_1' from individual '12331'</TITLE>
    <STUDY_REF accession="SRP001634">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Metagenome from Infant Gut Samples">Microbial composition of samples from infant gut human_metagenome_ltp_G9M_WGS_Environment</EXTERNAL_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA63661</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of unclassified Bacteria (miscellaneous) via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS383488">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS383488</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA218187.12331_SN_05_1</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Pond-243860</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="0.0E0"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2013-06-20 15:58:55.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
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          <NOTES>Sequencer Application 1.6.8.6</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>AssemblyWithoutReference</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>data_type</TAG>
        <VALUE>WGS</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>325392.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>library_type</TAG>
        <VALUE>WholeGenomeShotgun</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>broadinstitute.org:bsp.prod.sample:4CFMY</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>DNA:DNA Genomic</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>product_order</TAG>
        <VALUE>PDO-1159</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>product_part_number</TAG>
        <VALUE>P-WG-0004</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G36719</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>research_project</TAG>
        <VALUE>RP-342</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>root_sample_id</TAG>
        <VALUE>SM-2VRO5</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_id</TAG>
        <VALUE>SM-4CFMY</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>36419</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004446" center_name="BI" alias="23049.WR18246.454-2301.646657090126.P">
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      <PRIMARY_ID>SRX004446</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23049.WR18246.454-2301.646657090126.P</SUBMITTER_ID>
      <UUID>c573e9f8-f683-427c-b537-bc7e5a6332b8</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-2301' containing sample 'BROAD:SEQUENCING_SAMPLE:24468.0'</TITLE>
    <STUDY_REF accession="SRP001777">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001777</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41953</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. D22">Reference genome for Human Microbiome Project Bacteroides_sp_D22_ltp_HMPREF0106_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002825">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002825</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:24468.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2301</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="322"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
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            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">TGGTTGGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-20 14:06:15.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
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        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
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        <VALUE>Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>24468.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:24468.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G3100</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>18246</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004447" center_name="BI" alias="23048.WR18186.454-2283.646651090126.S">
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      <PRIMARY_ID>SRX004447</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23048.WR18186.454-2283.646651090126.S</SUBMITTER_ID>
      <UUID>f0132156-12d6-478a-9a7c-46fae7e022c3</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-2283' containing sample '2_2_43B_FAA'</TITLE>
    <STUDY_REF accession="SRP001764">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001764</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA38355</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. D20">Reference genome for the Human Microbiome Project Bacteroides_sp_D20_ltp_HMPREF0969_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002820">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002820</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.2_2_43B_FAA</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2283</LIBRARY_NAME>
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        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">AACACAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-20 12:34:15.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
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        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22679.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22679.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G3099</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>18186</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004448" center_name="BI" alias="2064458.WR36671.Solexa-166688.H0T24ADXX130627.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004448</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">2064458.WR36671.Solexa-166688.H0T24ADXX130627.P</SUBMITTER_ID>
      <UUID>c5cf5c7b-f883-4bc6-bbb3-723a54839204</UUID>
    </IDENTIFIERS>
    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-166688' containing sample 'TKK-01-0083'</TITLE>
    <STUDY_REF accession="SRP026500">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP026500</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA198178</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Mycobacterium tuberculosis TKK-01-0083">TB ARC KRITH Mycobacterium_tuberculosis_TKK_01_0083_ltp_K904_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Mycobacterium Tuberculosis TKK-01-0083 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS454483">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS454483</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN02053813</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Broad Institute">TKK-01-0083</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-166688</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="5000" NOMINAL_SDEV="199.48801"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2013-06-28 19:57:08.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.17.20</VERSION>
          <NOTES>Sequencer Application 2.0.5</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>340233.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>broadinstitute.org:bsp.prod.sample:4GRF3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>DNA:DNA Somatic</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>product_order</TAG>
        <VALUE>PDO-1356</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>product_part_number</TAG>
        <VALUE>P-MCV-0001</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G38236</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>research_project</TAG>
        <VALUE>RP-114</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>root_sample_id</TAG>
        <VALUE>SM-2Z9PB</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_id</TAG>
        <VALUE>SM-4GRF3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>36671</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004449" center_name="BI" alias="23049.WR18245.454-2320.646786090126.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004449</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23049.WR18245.454-2320.646786090126.S</SUBMITTER_ID>
      <UUID>821c8e92-7565-42df-b5ea-1c0b9d89b931</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-2320' containing sample 'BROAD:SEQUENCING_SAMPLE:24468.0'</TITLE>
    <STUDY_REF accession="SRP001777">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001777</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41953</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. D22">Reference genome for Human Microbiome Project Bacteroides_sp_D22_ltp_HMPREF0106_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002825">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002825</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:24468.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2320</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TCCAAGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-20 14:20:31.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>24468.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:24468.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G3100</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>18245</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004450" center_name="BI" alias="470818.WR25751.454-7220.743219110624.Berlin.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004450</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">470818.WR25751.454-7220.743219110624.Berlin.P</SUBMITTER_ID>
      <UUID>b06cd201-a099-48ea-9075-15646232a103</UUID>
    </IDENTIFIERS>
    <TITLE>Genome Sequencing and Assembly of E. coli O104:H4 strains</TITLE>
    <STUDY_REF accession="SRP008003">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP008003</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA68155</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Escherichia coli">Escherichia coli O104H4 str C236 11 genome sequencing ltp_EUBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>3kb genomic insert library</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS259595">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS259595</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA68155.C236-11_Tube 2_A</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-7220</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="467"/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>454</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">TATTGAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>12</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-06-25 03:57:29.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Alignment and Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>109829.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>broadinstitute.org:bsp.prod.sample:22NVT</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>DNA:DNA Somatic</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G14227</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>root_sample_id</TAG>
        <VALUE>SM-21X72</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_id</TAG>
        <VALUE>SM-22NVT</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25751</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004451" center_name="BI" alias="22783.WR17618.454-1971.646654090203.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004451</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22783.WR17618.454-1971.646654090203.P</SUBMITTER_ID>
      <UUID>d29adec5-3732-45ae-a575-7b1b22496998</UUID>
    </IDENTIFIERS>
    <TITLE>Sequencing of various genomes for the Human Microbiome Project on 454</TITLE>
    <STUDY_REF accession="SRP001616">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001616</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA42541</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Ruminococcaceae bacterium D16">Reference genome for Human Microbiome Project Ruminococcaceae_bacterium_D16_ltp_HMPREF0866_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002807">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002807</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.4_1_38B</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1971</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="319"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">TCGCGGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>12</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-04 10:16:43.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22680.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22680.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1739</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17618</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004452" center_name="BI" alias="23038.WR18163.454-2243.646654090203.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004452</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23038.WR18163.454-2243.646654090203.S</SUBMITTER_ID>
      <UUID>fc8adcbf-4f64-4be0-af4a-c17a0516f2da</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-2243' containing sample 'BROAD:SEQUENCING_SAMPLE:27711.0'</TITLE>
    <STUDY_REF accession="SRP001774">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001774</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41563</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. vincentii 3_1_27">This strain will be used for comparative genome analysis Fusobacterium_nucleatum_subsp_vincentii_3_1_27_ltp_HMPREF0405_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002824">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002824</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:27711.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2243</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TTCGTGGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-02-04 10:16:43.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>27711.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:27711.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G3089</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>18163</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004453" center_name="BI" alias="23039.WR18383.454-1828.648778090226.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004453</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23039.WR18383.454-1828.648778090226.S</SUBMITTER_ID>
      <UUID>87f18b4f-36e3-48f7-863a-6f8bff432816</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1828' containing sample 'Fusobacterium sp. 3_1_33'</TITLE>
    <STUDY_REF accession="SRP001771">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001771</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA38519</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 3_1_33">This strain will be used for comparative genome analysis Fusobacterium_nucleatum_subsp_animalis_3_1_33_ltp_HMPREF0406_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002809">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002809</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 3_1_33</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1828</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">ACCTGAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-03-14 18:15:35.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17342.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17342.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G3090</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>18383</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004454" center_name="BI" alias="22771.WR18384.454-1829.648778090226.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004454</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22771.WR18384.454-1829.648778090226.S</SUBMITTER_ID>
      <UUID>6f827feb-5d17-4bfd-92f6-74f031f18005</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1829' containing sample 'BROAD:SEQUENCING_SAMPLE:17349.0'</TITLE>
    <STUDY_REF accession="SRP001644">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001644</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA40049</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Klebsiella sp. 1_1_55">Reference Genome for the Human Microbiome Project Klebsiella_sp_1_1_55_ltp_HMPREF0485_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002810">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002810</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17349.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1829</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">CGGTCTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-03-14 18:15:35.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17349.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17349.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1755</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>18384</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004455" center_name="BI" alias="22760.WR18937.454-1826.646650090410.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004455</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22760.WR18937.454-1826.646650090410.S</SUBMITTER_ID>
      <UUID>d8883d50-1423-4006-8cae-971bb7f63006</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1826' containing sample 'BROAD:SEQUENCING_SAMPLE:17330.0'</TITLE>
    <STUDY_REF accession="SRP001638">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001638</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41961</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bilophila sp. 4_1_30">Reference genome for Human Microbiome project Bilophila_sp_4_1_30_ltp_HMPREF0178_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002791">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002791</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17330.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1826</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TTCTCAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-04-11 21:56:31.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17330.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17330.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1750</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>18937</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004456" center_name="BI" alias="22821.WR19102.454-2824.646648090430.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004456</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22821.WR19102.454-2824.646648090430.P</SUBMITTER_ID>
      <UUID>2230e8ff-4587-41a4-b81c-95a4e926513f</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-2824' containing sample 'BROAD:SEQUENCING_SAMPLE:16675.0'</TITLE>
    <STUDY_REF accession="SRP001658">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001658</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41983</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Erysipelotrichaceae bacterium 2_2_44A">Reference genome for Human Microbiome Project Erysipelotrichaceae_bacterium_2_2_44A_ltp_HMPREF9022_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002826">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002826</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16675.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2824</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="304"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">ACCGCGGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-05-04 14:22:59.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16675.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16675.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2112</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>19102</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004457" center_name="BI" alias="22821.WR19101.454-2827.715236090501.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004457</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22821.WR19101.454-2827.715236090501.S</SUBMITTER_ID>
      <UUID>d8f07d25-70af-49e5-82e1-395098344386</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-2827' containing sample 'BROAD:SEQUENCING_SAMPLE:16675.0'</TITLE>
    <STUDY_REF accession="SRP001658">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001658</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41983</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Erysipelotrichaceae bacterium 2_2_44A">Reference genome for Human Microbiome Project Erysipelotrichaceae_bacterium_2_2_44A_ltp_HMPREF9022_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002826">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002826</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16675.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2827</LIBRARY_NAME>
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        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:14158.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1267</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>13256</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004561" center_name="BI" alias="13234AAXX080101-7-P-Reverse">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004561</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">13234AAXX080101-7-P-Reverse</SUBMITTER_ID>
      <UUID>01ab7f88-74e6-482d-846a-cff4eba930de</UUID>
    </IDENTIFIERS>
    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA library 'Solexa-2844' containing sample 'BROAD:SEQUENCING_SAMPLE:14158.0'</TITLE>
    <STUDY_REF accession="SRP001661">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001661</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30065</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bifidobacterium longum subsp. infantis CCUG 52486">Reference genome for the Human Microbiome Project Bifidobacterium_longum_subsp_infantis_CCUG_52486_ltp_BLIG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Bifidobacterium longum subsp. infantis CCUG 52486 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002751">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002751</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:14158.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-2844</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>37</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
          <STEP_INDEX>2008-01-05 05:46:49.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Rig Software</PROGRAM>
          <VERSION>1.0.276</VERSION>
          <NOTES>Image Analysis 1.8.28</NOTES>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-01-05 14:56:20.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>1.8.28</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>WGSWithRef</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>14158.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:14158.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1267</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>13256</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004562" center_name="BI" alias="2042GAAXX071220-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004562</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">2042GAAXX071220-1-S</SUBMITTER_ID>
      <UUID>aee6cb75-7d84-4eff-86a9-f245f26af849</UUID>
    </IDENTIFIERS>
    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA library 'Solexa-2787' containing sample 'BROAD:SEQUENCING_SAMPLE:14158.0'</TITLE>
    <STUDY_REF accession="SRP001661">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001661</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA30065</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bifidobacterium longum subsp. infantis CCUG 52486">Reference genome for the Human Microbiome Project Bifidobacterium_longum_subsp_infantis_CCUG_52486_ltp_BLIG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Bifidobacterium longum subsp. infantis CCUG 52486 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002751">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002751</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:14158.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-2787</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>36</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
          <STEP_INDEX>2007-12-23 17:15:59.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Rig Software</PROGRAM>
          <VERSION>1.0.276</VERSION>
          <NOTES>Image Analysis 1.8.28</NOTES>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2007-12-26 11:41:14.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>1.8.28</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>WGSWithRef</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>14158.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:14158.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1267</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>13254</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004977" center_name="BI" alias="22785.WR19232.454-2886.646468090522.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004977</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22785.WR19232.454-2886.646468090522.P</SUBMITTER_ID>
      <UUID>038f8017-e6e2-4129-aaae-05861e087a32</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-2886' containing sample 'BROAD:SEQUENCING_SAMPLE:28792.0'</TITLE>
    <STUDY_REF accession="SRP001650">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001650</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA42539</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Rothia dentocariosa M567">Reference genome for Human Microbiome Project Rothia_dentocariosa_M567_ltp_HMPREF0734_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>10X fragment; 10X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS003100">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS003100</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:28792.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2886</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="358"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">TGGTTGGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-05-22 22:18:45.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>28792.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:28792.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2135</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>Sputum</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>19232</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004978" center_name="BI" alias="22794.WR19234.454-2885.646468090522.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004978</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22794.WR19234.454-2885.646468090522.P</SUBMITTER_ID>
      <UUID>639c380c-bddb-4827-accf-f9cef574e88d</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-2885' containing sample 'BROAD:SEQUENCING_SAMPLE:28800.0'</TITLE>
    <STUDY_REF accession="SRP001652">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001652</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41971</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Prevotella sp. C561">Reference genome for Human Microbiome Project Prevotella_sp_C561_ltp_HMPREF0666_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>10X fragment; 10X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS003101">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS003101</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:28800.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2885</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="311"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">AGGCGGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>12</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-05-22 22:18:45.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>28800.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:28800.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2136</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>Sputum</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>19234</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004979" center_name="BI" alias="22818.WR19235.454-2866.712621090515.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004979</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22818.WR19235.454-2866.712621090515.S</SUBMITTER_ID>
      <UUID>104fc8da-1fcb-458d-bd15-1fe8d8e72a5a</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-2866' containing sample 'SEQF 1652'</TITLE>
    <STUDY_REF accession="SRP001654">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001654</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41981</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Simonsiella muelleri ATCC 29453">Reference genome for the Human Microbiome Project Simonsiella_muelleri_ATCC_29453_ltp_HMPREF9021_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS003102">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS003102</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.SEQF 1652</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2866</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">ACGAGAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-05-26 09:55:48.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>33053.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:33053.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2138</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>19235</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004980" center_name="BI" alias="22820.WR19235.454-2861.712621090515.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004980</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22820.WR19235.454-2861.712621090515.S</SUBMITTER_ID>
      <UUID>f16ad34a-cc76-4245-b394-2d44f9080a2d</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-2861' containing sample 'SEQF 1653'</TITLE>
    <STUDY_REF accession="SRP001653">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001653</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41985</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Capnocytophaga granulosa ATCC 51502">Reference genome for Human Microbiome Project Capnocytophaga_granulosa_ATCC_51502_ltp_HMPREF9331_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS003103">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS003103</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.SEQF 1653</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2861</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TCTCCGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-05-26 09:55:48.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>33054.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:33054.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2139</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>19235</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004981" center_name="BI" alias="23043.WR19244.454-2069.646470090515.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004981</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23043.WR19244.454-2069.646470090515.P</SUBMITTER_ID>
      <UUID>527dfe0f-632a-4cb6-8186-ce8785139cd9</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-2069' containing sample 'BROAD:SEQUENCING_SAMPLE:22488.0'</TITLE>
    <STUDY_REF accession="SRP001772">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001772</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA42533</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Lactobacillus crispatus SJ-3C-US">Reference genome for Human Microbiome Project Lactobacillus_crispatus_SJ_3C_US_ltp_HMPREF0509_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002815">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002815</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22488.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2069</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="314"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">ACCACCTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-05-22 16:47:07.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22488.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22488.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G3093</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>19244</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004982" center_name="BI" alias="23045.WR19244.454-2043.646470090515.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004982</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23045.WR19244.454-2043.646470090515.P</SUBMITTER_ID>
      <UUID>130f21cd-3e27-493d-aa09-e3d1977f713a</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-2043' containing sample 'BROAD:SEQUENCING_SAMPLE:22494.0'</TITLE>
    <STUDY_REF accession="SRP001767">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001767</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA42543</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Lactobacillus gasseri SV-16A-US">Reference genome for Human Microbiome Project Lactobacillus_gasseri_SV_16A_US_ltp_HMPREF5175_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002813">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002813</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22494.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2043</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="338"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">ACCTTGGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-05-22 16:47:07.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22494.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22494.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G3094</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>19244</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004983" center_name="BI" alias="22783.WR19245.454-1971.646470090515.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004983</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22783.WR19245.454-1971.646470090515.P</SUBMITTER_ID>
      <UUID>e83508a4-5565-49a3-9fa9-6b8d7a1207f7</UUID>
    </IDENTIFIERS>
    <TITLE>Sequencing of various genomes for the Human Microbiome Project on 454</TITLE>
    <STUDY_REF accession="SRP001616">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001616</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA42541</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Ruminococcaceae bacterium D16">Reference genome for Human Microbiome Project Ruminococcaceae_bacterium_D16_ltp_HMPREF0866_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002807">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002807</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.4_1_38B</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1971</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="319"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">TCGCGGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>12</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-05-22 16:47:07.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22680.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22680.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1739</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>19245</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004984" center_name="BI" alias="22791.WR19234.454-2883.646470090515.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004984</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22791.WR19234.454-2883.646470090515.P</SUBMITTER_ID>
      <UUID>115f9578-64c2-4245-b499-1edaa903431c</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-2883' containing sample 'BROAD:SEQUENCING_SAMPLE:28801.0'</TITLE>
    <STUDY_REF accession="SRP001651">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001651</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA42537</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Prevotella oris C735">Reference genome for Human Microbiome Project Prevotella_oris_C735_ltp_HMPREF0665_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>10X fragment; 10X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS003104">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS003104</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:28801.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2883</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="319"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">ACAAGGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>12</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-05-22 16:47:07.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>28801.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:28801.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2137</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>Sputum</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>19234</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004985" center_name="BI" alias="22793.WR19235.454-2863.713465090515.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004985</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22793.WR19235.454-2863.713465090515.S</SUBMITTER_ID>
      <UUID>784bb317-942f-4090-bfc1-ecefd908cda4</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-2863' containing sample 'SEQF 1654'</TITLE>
    <STUDY_REF accession="SRP001655">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001655</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41979</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Scardovia inopinata F0304">Reference genome for Human Microbiome Project Scardovia_inopinata_F0304_ltp_HMPREF9020_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS003105">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS003105</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.SEQF 1654</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2863</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TTCGCGAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-05-26 16:09:09.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>33055.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:33055.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2140</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>19235</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004986" center_name="BI" alias="22790.WR19235.454-2865.713465090515.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004986</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22790.WR19235.454-2865.713465090515.S</SUBMITTER_ID>
      <UUID>f484a0ef-3d70-4acd-b812-1667cbd837f1</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-2865' containing sample 'SEQF 1655'</TITLE>
    <STUDY_REF accession="SRP001656">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001656</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA42549</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Parascardovia denticolens F0305">Reference genome for Human Microbiome Project Parascardovia_denticolens_F0305_ltp_HMPREF9017_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS003106">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS003106</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.SEQF 1655</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2865</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">CGGTCTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-05-26 16:09:09.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>33056.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:33056.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2141</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>19235</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX004987" center_name="BI" alias="23037.WR18995.454-2792.648043090529.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX004987</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23037.WR18995.454-2792.648043090529.P</SUBMITTER_ID>
      <UUID>67ea460b-d40e-4764-9855-04ce4d6d89ea</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-2792' containing sample 'Fusobacterium sp. 11_3_2'</TITLE>
    <STUDY_REF accession="SRP001776">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001776</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA39559</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 11_3_2">Reference genome for Human Microbiome Project Fusobacterium_nucleatum_subsp_animalis_11_3_2_ltp_HMPREF0401_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002800">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002800</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 11_3_2</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2792</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="339"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">AGTTGGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>12</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-06-01 11:09:41.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16679.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16679.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1754</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>18995</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX005408" center_name="BI" alias="22809.WR19246.454-2891.708117090609.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX005408</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22809.WR19246.454-2891.708117090609.S</SUBMITTER_ID>
      <UUID>be054887-9a7d-4199-ba15-e4f2425250b8</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-2891' containing sample 'BROAD:SEQUENCING_SAMPLE:16657.0'</TITLE>
    <STUDY_REF accession="SRP001642">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001642</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41955</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 1_1_30">Reference genome for Human Microbiome Project Bacteroides_sp_1_1_30_ltp_HMPREF0127_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002808">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002808</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16657.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2891</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">AACTCGAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-06-10 11:02:23.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16657.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16657.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1747</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>19246</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX005409" center_name="BI" alias="22785.WR19231.454-2860.712901090529.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX005409</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22785.WR19231.454-2860.712901090529.S</SUBMITTER_ID>
      <UUID>8ea27b77-9d4e-4ffa-aa2f-c5826d59fddc</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-2860' containing sample 'BROAD:SEQUENCING_SAMPLE:28792.0'</TITLE>
    <STUDY_REF accession="SRP001650">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001650</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA42539</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Rothia dentocariosa M567">Reference genome for Human Microbiome Project Rothia_dentocariosa_M567_ltp_HMPREF0734_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>10X fragment; 10X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS003100">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS003100</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:28792.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2860</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">AATGGTAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-06-02 01:32:36.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>28792.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:28792.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2135</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>Sputum</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>19231</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX005410" center_name="BI" alias="22809.WR19246.454-2891.719284090529.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX005410</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22809.WR19246.454-2891.719284090529.S</SUBMITTER_ID>
      <UUID>a3de2353-40d1-4c27-baf4-f55d54e3746e</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-2891' containing sample 'BROAD:SEQUENCING_SAMPLE:16657.0'</TITLE>
    <STUDY_REF accession="SRP001642">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001642</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41955</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 1_1_30">Reference genome for Human Microbiome Project Bacteroides_sp_1_1_30_ltp_HMPREF0127_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002808">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002808</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16657.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2891</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">AACTCGAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-06-02 01:05:56.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16657.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16657.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1747</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>19246</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX005411" center_name="BI" alias="470817.WR25746.0109413474.748420110619.Colombo.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX005411</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">470817.WR25746.0109413474.748420110619.Colombo.S</SUBMITTER_ID>
      <UUID>b7f5b4bb-04ef-4610-88b1-dcda315f877e</UUID>
    </IDENTIFIERS>
    <TITLE>Genome Sequencing and Assembly of E. coli O104:H4 strains</TITLE>
    <STUDY_REF accession="SRP000285">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP000285</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA68153</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Escherichia coli O104:H4 str. C227-11">Escherichia coli O104H4 str C227 11 Genome sequencing ltp_EUAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Fragment library</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS259611">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS259611</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA68153.C227-11_Tube 2_A</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109413474</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>454</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">ACCGTAATC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-06-20 15:18:07.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Alignment and Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>109826.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>broadinstitute.org:bsp.prod.sample:22NVQ</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>DNA:DNA Somatic</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G14226</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>root_sample_id</TAG>
        <VALUE>SM-21X6Z</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_id</TAG>
        <VALUE>SM-22NVQ</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25746</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX005412" center_name="BI" alias="22802.WR19247.454-2892.719284090529.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX005412</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22802.WR19247.454-2892.719284090529.S</SUBMITTER_ID>
      <UUID>336cf052-296a-4044-9597-7da79641eec0</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-2892' containing sample 'Bilophila wadsworthia 3_1_6'</TITLE>
    <STUDY_REF accession="SRP001640">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001640</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41963</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bilophila wadsworthia 3_1_6">Reference genome for Human Microbiome Project Bilophila_wadsworthia_3_1_6_ltp_HMPREF0179_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002805">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002805</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Bilophila wadsworthia 3_1_6</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2892</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">CCGACGTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-06-02 01:05:56.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16666.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16666.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1749</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>19247</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX005413" center_name="BI" alias="22794.WR19233.454-2862.712642090529.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX005413</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22794.WR19233.454-2862.712642090529.S</SUBMITTER_ID>
      <UUID>2edf3596-02a7-4485-a30b-8b18bce5e800</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-2862' containing sample 'BROAD:SEQUENCING_SAMPLE:28800.0'</TITLE>
    <STUDY_REF accession="SRP001652">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001652</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41971</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Prevotella sp. C561">Reference genome for Human Microbiome Project Prevotella_sp_C561_ltp_HMPREF0666_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>10X fragment; 10X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS003101">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS003101</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:28800.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2862</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TCCAAGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-06-02 05:36:36.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>28800.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:28800.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2136</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>Sputum</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>19233</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX005414" center_name="BI" alias="22791.WR19233.454-2864.712642090529.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX005414</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22791.WR19233.454-2864.712642090529.S</SUBMITTER_ID>
      <UUID>07b959ef-6cbf-4c57-b4a6-9ce9a0ffdecb</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-2864' containing sample 'BROAD:SEQUENCING_SAMPLE:28801.0'</TITLE>
    <STUDY_REF accession="SRP001651">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001651</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA42537</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Prevotella oris C735">Reference genome for Human Microbiome Project Prevotella_oris_C735_ltp_HMPREF0665_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>10X fragment; 10X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS003104">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS003104</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:28801.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2864</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TCCAGAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-06-02 05:36:36.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>28801.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:28801.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2137</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>Sputum</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>19233</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX005415" center_name="BI" alias="22793.WR19236.454-2884.646511090603.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX005415</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22793.WR19236.454-2884.646511090603.P</SUBMITTER_ID>
      <UUID>98a113d2-9e78-47cc-8eba-2b284a99136e</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-2884' containing sample 'SEQF 1654'</TITLE>
    <STUDY_REF accession="SRP001655">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001655</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41979</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Scardovia inopinata F0304">Reference genome for Human Microbiome Project Scardovia_inopinata_F0304_ltp_HMPREF9020_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS003105">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS003105</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.SEQF 1654</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2884</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="309"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="6" base_coord="5">
              <BASECALL min_match="6" max_mismatch="0" match_edge="full">CCTCTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>11</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-06-04 00:40:25.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>33055.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:33055.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2140</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>19236</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX005416" center_name="BI" alias="22790.WR19236.454-2882.646664090603.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX005416</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22790.WR19236.454-2882.646664090603.P</SUBMITTER_ID>
      <UUID>b95e6abc-c26a-4e09-b581-dc059ea4bcc3</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-2882' containing sample 'SEQF 1655'</TITLE>
    <STUDY_REF accession="SRP001656">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001656</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA42549</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Parascardovia denticolens F0305">Reference genome for Human Microbiome Project Parascardovia_denticolens_F0305_ltp_HMPREF9017_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS003106">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS003106</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.SEQF 1655</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2882</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="290"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">ACCGGAAGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-06-03 23:35:16.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>33056.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:33056.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2141</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>19236</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX005417" center_name="BI" alias="22818.WR19236.454-2887.646664090603.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX005417</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22818.WR19236.454-2887.646664090603.P</SUBMITTER_ID>
      <UUID>2881ea99-2c39-4cdb-9daf-8c8bf7a59b61</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-2887' containing sample 'SEQF 1652'</TITLE>
    <STUDY_REF accession="SRP001654">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001654</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41981</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Simonsiella muelleri ATCC 29453">Reference genome for the Human Microbiome Project Simonsiella_muelleri_ATCC_29453_ltp_HMPREF9021_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS003102">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS003102</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.SEQF 1652</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2887</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="319"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">CGGTATC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>12</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-06-03 23:35:16.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>33053.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:33053.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2138</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>19236</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX005418" center_name="BI" alias="22820.WR19236.454-2888.651938090604.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX005418</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22820.WR19236.454-2888.651938090604.P</SUBMITTER_ID>
      <UUID>576c8894-5f88-4968-b177-b15ce2346210</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-2888' containing sample 'SEQF 1653'</TITLE>
    <STUDY_REF accession="SRP001653">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001653</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41985</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Capnocytophaga granulosa ATCC 51502">Reference genome for Human Microbiome Project Capnocytophaga_granulosa_ATCC_51502_ltp_HMPREF9331_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS003103">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS003103</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.SEQF 1653</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2888</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="419"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">CGTTCCGGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-06-04 20:43:52.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>33054.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:33054.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2139</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>19236</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT alias="235197.WR36419.Pond-243856.C25HAACXX130609.P" accession="SRX005419" center_name="BI">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX005419</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">235197.WR36419.Pond-243856.C25HAACXX130609.P</SUBMITTER_ID>
      <UUID>e6d0c030-1e5a-4733-9514-f7457bdf56f1</UUID>
    </IDENTIFIERS>
    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-243856' containing sample '10451-ST-8'</TITLE>
    <STUDY_REF accession="SRP001634">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Metagenome from Infant Gut Samples">Microbial composition of samples from infant gut human_metagenome_ltp_G9M_WGS_Environment</EXTERNAL_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA63661</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of human gut metagenome via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS414180">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS414180</PRIMARY_ID>
          <EXTERNAL_ID namespace="Broad Institute">10451-ST-8</EXTERNAL_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828390</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Pond-243856</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="0.0E0"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2013-06-20 12:57:28.0</STEP_INDEX>
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          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.15.19.5</VERSION>
          <NOTES>Sequencer Application 1.6.8.6</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>AssemblyWithoutReference</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>data_type</TAG>
        <VALUE>WGS</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>325352.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>library_type</TAG>
        <VALUE>WholeGenomeShotgun</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>broadinstitute.org:bsp.prod.sample:4CFMU</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>DNA:DNA Somatic</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>product_order</TAG>
        <VALUE>PDO-1159</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>product_part_number</TAG>
        <VALUE>P-WG-0004</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G36687</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>research_project</TAG>
        <VALUE>RP-342</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>root_sample_id</TAG>
        <VALUE>SM-2ISJL</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_id</TAG>
        <VALUE>SM-4CFMU</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>36419</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX005420" center_name="BI" alias="22807.WR17624.454-2874.651938090604.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX005420</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22807.WR17624.454-2874.651938090604.P</SUBMITTER_ID>
      <UUID>de1df3fb-eb61-43f7-bdb8-cd90427c94be</UUID>
    </IDENTIFIERS>
    <TITLE>Sequencing of various genomes for the Human Microbiome Project on 454</TITLE>
    <STUDY_REF accession="SRP001641">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001641</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41949</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Alistipes sp. 10_1_37FAA">Reference genome for Human Microbiome Project Alistipes_sp_10_1_37FAA_ltp_HMPREF0068_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002799">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002799</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Alistipes sp. 10_1_37_FAA</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2874</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="277"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
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            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
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            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">CCAACCGGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
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              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-06-04 20:43:52.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
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        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16655.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16655.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1746</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>17624</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX005421" center_name="BI" alias="22821.WR19102.454-2824.651942090610.P">
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      <PRIMARY_ID>SRX005421</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22821.WR19102.454-2824.651942090610.P</SUBMITTER_ID>
      <UUID>be8ba148-4009-4388-ad6f-c1501fedb8c4</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-2824' containing sample 'BROAD:SEQUENCING_SAMPLE:16675.0'</TITLE>
    <STUDY_REF accession="SRP001658">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001658</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41983</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Erysipelotrichaceae bacterium 2_2_44A">Reference genome for Human Microbiome Project Erysipelotrichaceae_bacterium_2_2_44A_ltp_HMPREF9022_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002826">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002826</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16675.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2824</LIBRARY_NAME>
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        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="304"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">ACCGCGGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-06-11 15:59:18.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16675.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16675.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2112</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>19102</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX005422" center_name="BI" alias="22786.WR19238.454-2896.651943090611.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX005422</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22786.WR19238.454-2896.651943090611.P</SUBMITTER_ID>
      <UUID>981a1509-a63a-4ba3-91e7-7b9dcab7303a</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-2896' containing sample 'SEQF 1659'</TITLE>
    <STUDY_REF accession="SRP001657">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001657</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA42547</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Neisseria sp. oral taxon 014 str. F0314">Reference genome for Human Microbiome Project Neisseria_sp_oral_taxon_014_str_F0314_ltp_HMPREF9016_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS003220">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS003220</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.SEQF 1659</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2896</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="346"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">ACGTGGAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-06-11 22:45:47.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>34478.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:34478.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2142</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>19238</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX005423" center_name="BI" alias="22818.WR19235.454-2866.708045090617.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX005423</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22818.WR19235.454-2866.708045090617.S</SUBMITTER_ID>
      <UUID>4d1da1d4-4024-4f51-a646-652f336e111c</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-2866' containing sample 'SEQF 1652'</TITLE>
    <STUDY_REF accession="SRP001654">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001654</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41981</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Simonsiella muelleri ATCC 29453">Reference genome for the Human Microbiome Project Simonsiella_muelleri_ATCC_29453_ltp_HMPREF9021_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS003102">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS003102</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.SEQF 1652</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2866</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">ACGAGAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-06-18 08:37:10.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>33053.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:33053.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2138</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>19235</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX006177" center_name="BI" alias="22786.WR19237.454-2890.707918090619.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX006177</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22786.WR19237.454-2890.707918090619.S</SUBMITTER_ID>
      <UUID>3de5a150-3e33-4334-bd96-4d7bfa8ffb75</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-2890' containing sample 'SEQF 1659'</TITLE>
    <STUDY_REF accession="SRP001657">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001657</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA42547</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Neisseria sp. oral taxon 014 str. F0314">Reference genome for Human Microbiome Project Neisseria_sp_oral_taxon_014_str_F0314_ltp_HMPREF9016_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS003220">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS003220</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.SEQF 1659</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2890</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">ATTCGTAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-06-20 17:33:44.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>34478.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:34478.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2142</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>19237</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX006178" center_name="BI" alias="347548.WR25848.Pond-84099.B0228ACXX110817.Tag_IlluminaHTKit1.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX006178</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">347548.WR25848.Pond-84099.B0228ACXX110817.Tag_IlluminaHTKit1.P</SUBMITTER_ID>
      <UUID>b6c1952a-6d56-421a-8f21-69742faedb02</UUID>
    </IDENTIFIERS>
    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-84099' containing sample 'Uganda_Kampala4' from individual 'UGK_432.4'</TITLE>
    <STUDY_REF accession="SRP007838">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP007838</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA67411</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Plasmodium sp. Multi-Species Project">Plasmodium sp project ltp_GM9_WGS_Multispecies</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Plasmodium falciparum UGK 432.4 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS259219">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS259219</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA67667.Uganda_Kampala4</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Pond-84099</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_SDEV="25.279385" NOMINAL_LENGTH="180"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>210</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE base_coord="102" default_length="8">
              <BASECALL match_edge="full" max_mismatch="1" min_match="7">ATCACGAT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>110</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-08-27 07:22:26.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.12.4.2</VERSION>
          <NOTES>Sequencer Application 1.4.8</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>AssemblyWithReference</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>83297.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>library_type</TAG>
        <VALUE>WholeGenomeShotgun</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:83297.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G14311</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>Blood</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25848</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX006179" center_name="BI" alias="22787.WR19243.454-1823.646754090619.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX006179</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22787.WR19243.454-1823.646754090619.S</SUBMITTER_ID>
      <UUID>c4dc2e1d-65a3-432e-968d-c1f2ebc1af82</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1823' containing sample 'BROAD:SEQUENCING_SAMPLE:17326.0'</TITLE>
    <STUDY_REF accession="SRP001617">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001617</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41965</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Burkholderiales bacterium 1_1_47">Reference genome for Human Microbiome Project Burkholderiales_bacterium_1_1_47_ltp_HMPREF0189_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002790">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002790</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17326.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1823</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TTGGAGGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-06-30 10:15:09.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17326.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17326.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1738</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>19243</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX006180" center_name="BI" alias="2064460.WR36671.Solexa-166697.H0T24ADXX130627.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX006180</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">2064460.WR36671.Solexa-166697.H0T24ADXX130627.P</SUBMITTER_ID>
      <UUID>68ce238a-8fc0-425c-846f-6e3a5dc6ba7b</UUID>
    </IDENTIFIERS>
    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-166697' containing sample 'TKK-01-0085'</TITLE>
    <STUDY_REF accession="SRP026501">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP026501</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA198180</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Mycobacterium tuberculosis TKK-01-0085">TB ARC KRITH Mycobacterium_tuberculosis_TKK_01_0085_ltp_K906_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Mycobacterium Tuberculosis TKK-01-0085 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS454484">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS454484</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN02053815</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Broad Institute">TKK-01-0085</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-166697</LIBRARY_NAME>
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        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="5000" NOMINAL_SDEV="173.45608"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2013-06-28 19:57:08.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
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          <NOTES>Sequencer Application 2.0.5</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>340241.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>broadinstitute.org:bsp.prod.sample:4GRFB</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>DNA:DNA Somatic</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>product_order</TAG>
        <VALUE>PDO-1356</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>product_part_number</TAG>
        <VALUE>P-MCV-0001</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G38238</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>research_project</TAG>
        <VALUE>RP-114</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>root_sample_id</TAG>
        <VALUE>SM-2Z9PD</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_id</TAG>
        <VALUE>SM-4GRFB</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>36671</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX006181" center_name="BI" alias="347548.WR25848.Pond-83907.B0228ACXX110817.Tag_IlluminaHTKit2.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX006181</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">347548.WR25848.Pond-83907.B0228ACXX110817.Tag_IlluminaHTKit2.P</SUBMITTER_ID>
      <UUID>c95a2d51-fe42-4b29-8aa3-4267a61e2ef4</UUID>
    </IDENTIFIERS>
    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-83907' containing sample 'Uganda_Kampala1' from individual 'UGK_396.1'</TITLE>
    <STUDY_REF accession="SRP007838">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP007838</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA67411</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Plasmodium sp. Multi-Species Project">Plasmodium sp project ltp_GM9_WGS_Multispecies</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Plasmodium falciparum UGK 396.1 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS259224">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS259224</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA67667.Uganda_Kampala1</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Pond-83907</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_SDEV="27.790105" NOMINAL_LENGTH="180"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
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          <SPOT_LENGTH>210</SPOT_LENGTH>
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            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE base_coord="102" default_length="8">
              <BASECALL match_edge="full" max_mismatch="1" min_match="7">CGATGTAT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>110</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-08-27 07:22:26.0</STEP_INDEX>
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          <PROGRAM>GAPipeline</PROGRAM>
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          <NOTES>Sequencer Application 1.4.8</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>AssemblyWithReference</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>83294.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>library_type</TAG>
        <VALUE>WholeGenomeShotgun</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:83294.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G14308</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>Blood</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25848</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX006182" center_name="BI" alias="2064461.WR36671.Solexa-166701.H0T24ADXX130627.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX006182</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">2064461.WR36671.Solexa-166701.H0T24ADXX130627.P</SUBMITTER_ID>
      <UUID>4f55be3e-de2b-4d8d-9a60-69bbd31911c6</UUID>
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    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-166701' containing sample 'TKK-01-0086'</TITLE>
    <STUDY_REF accession="SRP026507">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP026507</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA198181</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Mycobacterium tuberculosis TKK-01-0086">TB ARC KRITH Mycobacterium_tuberculosis_TKK_01_0086_ltp_K907_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Mycobacterium Tuberculosis TKK-01-0086 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS454490">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS454490</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN02053816</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Broad Institute">TKK-01-0086</EXTERNAL_ID>
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      </SAMPLE_DESCRIPTOR>
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        <LIBRARY_NAME>Solexa-166701</LIBRARY_NAME>
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        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="5000" NOMINAL_SDEV="225.013633333333"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2013-06-28 19:57:08.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
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          <NOTES>Sequencer Application 2.0.5</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>340244.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>broadinstitute.org:bsp.prod.sample:4GRFE</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>DNA:DNA Somatic</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>product_order</TAG>
        <VALUE>PDO-1356</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>product_part_number</TAG>
        <VALUE>P-MCV-0001</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G38239</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>research_project</TAG>
        <VALUE>RP-114</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>root_sample_id</TAG>
        <VALUE>SM-2Z9PE</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_id</TAG>
        <VALUE>SM-4GRFE</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>36671</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX006183" center_name="BI" alias="22813.WR19280.454-2894.646754090619.P">
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      <PRIMARY_ID>SRX006183</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22813.WR19280.454-2894.646754090619.P</SUBMITTER_ID>
      <UUID>92196dbb-4c9b-41f6-ba08-bdfeccdbb5c3</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-2894' containing sample 'Acidaminococcus sp. D21'</TITLE>
    <STUDY_REF accession="SRP001647">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001647</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA34117</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Acidaminococcus sp. D21">Reference genome for the Human Microbiome Project Acidaminococcus_sp_D21_ltp_ACDG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15X fragment; 30X physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002798">
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          <PRIMARY_ID>SRS002798</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Acidaminococcus sp. D21</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2894</LIBRARY_NAME>
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        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="392"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
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          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
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            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
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            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="6" base_coord="5">
              <BASECALL min_match="6" max_mismatch="0" match_edge="full">AGACAC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>11</BASE_COORD>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
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              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
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      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-06-30 10:15:09.0</STEP_INDEX>
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          <PROGRAM>454BaseCaller</PROGRAM>
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      </PIPELINE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>33052.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:33052.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1745</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>19280</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
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  <EXPERIMENT accession="SRX006184" center_name="BI" alias="347548.WR25848.Pond-84100.B0228ACXX110817.Tag_IlluminaHTKit3.P">
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      <PRIMARY_ID>SRX006184</PRIMARY_ID>
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    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-84100' containing sample 'Uganda_Kampala5' from individual 'UGK_659.1'</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP007838</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA67411</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Plasmodium sp. Multi-Species Project">Plasmodium sp project ltp_GM9_WGS_Multispecies</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Plasmodium falciparum UGK 659.1 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS259218">
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          <PRIMARY_ID>SRS259218</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA67667.Uganda_Kampala5</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Pond-84100</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
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        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_SDEV="22.26768" NOMINAL_LENGTH="180"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>210</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE base_coord="102" default_length="8">
              <BASECALL match_edge="full" max_mismatch="1" min_match="7">TTAGGCAT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>110</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-08-27 07:22:26.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.12.4.2</VERSION>
          <NOTES>Sequencer Application 1.4.8</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>AssemblyWithReference</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>83298.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>library_type</TAG>
        <VALUE>WholeGenomeShotgun</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:83298.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G14312</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>Blood</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25848</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX006185" center_name="BI" alias="22820.WR19235.454-2861.717337090623.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX006185</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22820.WR19235.454-2861.717337090623.S</SUBMITTER_ID>
      <UUID>0ac81653-f2ce-4f0f-91f5-1c414c2f89b2</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-2861' containing sample 'SEQF 1653'</TITLE>
    <STUDY_REF accession="SRP001653">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001653</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41985</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Capnocytophaga granulosa ATCC 51502">Reference genome for Human Microbiome Project Capnocytophaga_granulosa_ATCC_51502_ltp_HMPREF9331_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS003103">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS003103</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.SEQF 1653</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2861</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TCTCCGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-06-24 07:44:27.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.22</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>33054.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:33054.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2139</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>19235</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX006311" center_name="BI" alias="643281080507-2-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX006311</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">643281080507-2-S</SUBMITTER_ID>
      <UUID>f4efc472-581d-4777-8752-61b51a17d727</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1025' containing sample 'BROAD:SEQUENCING_SAMPLE:22675.0'</TITLE>
    <STUDY_REF accession="SRP001683">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001683</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32447</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. D1">Reference genome for the Human Microbiome Project Bacteroides_sp_D1_ltp_BSAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bacteroides sp. D1 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002767">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002767</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22675.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1025</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-08-05 18:50:27.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22675.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22675.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1414</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX006312" center_name="BI" alias="642121080516-1-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX006312</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642121080516-1-P</SUBMITTER_ID>
      <UUID>ea5d2e45-4b7e-4f43-a096-260e6f921dfc</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-698' containing sample 'Fusobacterium sp. 12_1B'</TITLE>
    <STUDY_REF accession="SRP001624">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001624</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32471</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium ulcerans 12-1B">Reference genome for the Human Microbiome Project Fusobacterium_ulcerans_12_1B_12_1B_ltp_HMPREF0402_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Fusobacterium ulcerans 12-1B via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS107454">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS107454</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 12_1B</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-698</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="501"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-22 11:36:12.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16680.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16680.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1331</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX006313" center_name="BI" alias="642121080516-2-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX006313</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642121080516-2-P</SUBMITTER_ID>
      <UUID>d65350e7-8044-4e03-b95c-5e4e2380edb0</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1021' containing sample 'BROAD:SEQUENCING_SAMPLE:16688.0'</TITLE>
    <STUDY_REF accession="SRP001626">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001626</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32503</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Ruminococcus sp. 5_1_39BFAA">Reference genome for the Human Microbiome Project Ruminococcus_sp_5_1_39BFAA_ltp_RSAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Ruminococcus sp. 5_1_39BFAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002755">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002755</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16688.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1021</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="435"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-22 11:36:12.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16688.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16688.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1332</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX006314" center_name="BI" alias="642044080506-16-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX006314</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642044080506-16-S</SUBMITTER_ID>
      <UUID>40f01057-b960-44b0-a0e2-0eac142eedbd</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1025' containing sample 'BROAD:SEQUENCING_SAMPLE:22675.0'</TITLE>
    <STUDY_REF accession="SRP001683">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001683</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32447</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. D1">Reference genome for the Human Microbiome Project Bacteroides_sp_D1_ltp_BSAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bacteroides sp. D1 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002767">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002767</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22675.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1025</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-06-06 10:34:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22675.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22675.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1414</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX006315" center_name="BI" alias="642121080516-3-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX006315</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642121080516-3-P</SUBMITTER_ID>
      <UUID>9068a082-08c4-4707-92c7-a31b689deced</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1022' containing sample 'BROAD:SEQUENCING_SAMPLE:16260.0'</TITLE>
    <STUDY_REF accession="SRP001619">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001619</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32489</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Helicobacter bilis ATCC 43879">Reference genome for the Human Microbiome Project Helicobacter_bilis_ATCC_43879_ltp_HRAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Helicobacter bilis ATCC 43879 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002757">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002757</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16260.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1022</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="468"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-22 11:36:12.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16260.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16260.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1333</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX006316" center_name="BI" alias="641914080508-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX006316</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641914080508-1-S</SUBMITTER_ID>
      <UUID>cbffc73d-a7cd-4b5b-b124-656ec2996bba</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1061' containing sample 'BROAD:SEQUENCING_SAMPLE:22676.0'</TITLE>
    <STUDY_REF accession="SRP001682">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001682</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32449</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. D2">Reference genome for the Human Microbiome Project Bacteroides_sp_D2_ltp_BSGG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bacteroides sp. D2 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002774">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002774</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22676.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1061</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-08 22:40:45.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22676.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22676.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1415</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX006317" center_name="BI" alias="641780080506-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX006317</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641780080506-1-S</SUBMITTER_ID>
      <UUID>1784f0ff-560a-4a8c-8b28-708754ccf6a5</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1061' containing sample 'BROAD:SEQUENCING_SAMPLE:22676.0'</TITLE>
    <STUDY_REF accession="SRP001682">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001682</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32449</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. D2">Reference genome for the Human Microbiome Project Bacteroides_sp_D2_ltp_BSGG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bacteroides sp. D2 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002774">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002774</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22676.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1061</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-08-05 17:59:45.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22676.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22676.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1415</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX006318" center_name="BI" alias="641737080523-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX006318</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641737080523-1-S</SUBMITTER_ID>
      <UUID>e952e1d8-33c8-4f3c-bfb2-6ac65422bd5f</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-674' containing sample 'BROAD:SEQUENCING_SAMPLE:16669.0'</TITLE>
    <STUDY_REF accession="SRP001615">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001615</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32457</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Clostridium sp. 7_2_43FAA">Reference genome for the Human Microbiome Project Clostridium_sp_7_2_43FAA_ltp_CSBG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Clostridium sp. 7_2_43FAA via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002752">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002752</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16669.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-674</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-23 23:43:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16669.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16669.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1330</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX006319" center_name="BI" alias="642309080521-1-S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX006319</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">642309080521-1-S</SUBMITTER_ID>
      <UUID>315e0386-33b9-422c-89b8-a664dad89ac1</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1025' containing sample 'BROAD:SEQUENCING_SAMPLE:22675.0'</TITLE>
    <STUDY_REF accession="SRP001683">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001683</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32447</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. D1">Reference genome for the Human Microbiome Project Bacteroides_sp_D1_ltp_BSAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Bacteroides sp. D1 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002767">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002767</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22675.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1025</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-05-22 00:39:09.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22675.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22675.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1414</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX006680" center_name="BI" alias="641780080506-2-P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX006680</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">641780080506-2-P</SUBMITTER_ID>
      <UUID>6be29b18-3697-47c8-9ac0-0862b1193264</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1083' containing sample 'BROAD:SEQUENCING_SAMPLE:16676.0'</TITLE>
    <STUDY_REF accession="SRP001629">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001629</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32463</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Escherichia sp. 1_1_43">Reference genome for the Human Microbiome Project Escherichia_sp_1_1_43_ltp_ESCG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002762">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002762</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16676.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1083</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="343"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2008-08-05 17:59:45.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>1.1.03.24</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16676.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16676.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1337</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16544</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX008418" center_name="BI" alias="22810.WR16991.454-1328.645044080826.3.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX008418</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22810.WR16991.454-1328.645044080826.3.S</SUBMITTER_ID>
      <UUID>ef92af16-5c67-4e1a-ac9f-8328a2b889af</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1328' containing sample 'BROAD:SEQUENCING_SAMPLE:17340.0'</TITLE>
    <STUDY_REF accession="SRP001681">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001681</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32475</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 21_1A">Reference genome for the Human Microbiome Project Fusobacterium_nucleatum_subsp_animalis_21_1A_ltp_HMPREF0404_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002784">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002784</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17340.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1328</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">CTTCCTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-09-15 13:42:25.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17340.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17340.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1542</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16991</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX008419" center_name="BI" alias="22810.WR16991.454-1328.645044080826.4.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX008419</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22810.WR16991.454-1328.645044080826.4.S</SUBMITTER_ID>
      <UUID>9aaf8a76-5693-40ff-82e5-272b21e7cf30</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-1328' containing sample 'BROAD:SEQUENCING_SAMPLE:17340.0'</TITLE>
    <STUDY_REF accession="SRP001681">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001681</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32475</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 21_1A">Reference genome for the Human Microbiome Project Fusobacterium_nucleatum_subsp_animalis_21_1A_ltp_HMPREF0404_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002784">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002784</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17340.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-1328</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">CTTCCTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-09-15 13:42:25.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.00.17</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17340.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17340.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1542</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>16991</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX013346" center_name="BI" alias="22794.WR20452.454-2862.722448091201.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX013346</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22794.WR20452.454-2862.722448091201.S</SUBMITTER_ID>
      <UUID>c4687b6d-5643-43b9-8aa7-7d9996cdf463</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-2862' containing sample 'BROAD:SEQUENCING_SAMPLE:28800.0'</TITLE>
    <STUDY_REF accession="SRP001652">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001652</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41971</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Prevotella sp. C561">Reference genome for Human Microbiome Project Prevotella_sp_C561_ltp_HMPREF0666_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS003101">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS003101</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:28800.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2862</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TCCAAGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-12-02 03:04:35.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.01.12</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>28800.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:28800.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2136</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>Sputum</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>20452</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX014406" center_name="BI" alias="22794.WR20453.454-3520.720565091208.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX014406</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22794.WR20453.454-3520.720565091208.P</SUBMITTER_ID>
      <UUID>12ec79e2-f93a-4239-8db3-9114eb8926bc</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-3520' containing sample 'BROAD:SEQUENCING_SAMPLE:28800.0'</TITLE>
    <STUDY_REF accession="SRP001652">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001652</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41971</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Prevotella sp. C561">Reference genome for Human Microbiome Project Prevotella_sp_C561_ltp_HMPREF0666_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS003101">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS003101</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:28800.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-3520</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="319"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">AAGGTGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>12</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-01-25 17:06:39.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.01.12</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>28800.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:28800.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2136</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>Sputum</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>20453</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX014407" center_name="BI" alias="22802.WR20450.454-2892.720565091208.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX014407</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22802.WR20450.454-2892.720565091208.S</SUBMITTER_ID>
      <UUID>a9aa12ba-a9ca-463d-992d-67ba10ae8c05</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-2892' containing sample 'Bilophila wadsworthia 3_1_6'</TITLE>
    <STUDY_REF accession="SRP001640">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001640</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41963</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bilophila wadsworthia 3_1_6">Reference genome for Human Microbiome Project Bilophila_wadsworthia_3_1_6_ltp_HMPREF0179_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002805">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002805</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Bilophila wadsworthia 3_1_6</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2892</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">CCGACGTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-01-25 17:06:39.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.01.12</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16666.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16666.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1749</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>20450</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX014408" center_name="BI" alias="22769.WR20448.454-3518.720565091208.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX014408</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22769.WR20448.454-3518.720565091208.P</SUBMITTER_ID>
      <UUID>3b10d113-0bce-4223-83ac-40df0e6327df</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-3518' containing sample 'BROAD:SEQUENCING_SAMPLE:16693.0'</TITLE>
    <STUDY_REF accession="SRP001277">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001277</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA39393</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Lachnospiraceae bacterium 4_1_37FAA">Reference genome for the Human Microbiome Project Lachnospiraceae_bacterium_4_1_37FAA_ltp_HMPREF0985_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002794">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002794</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16693.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-3518</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="388"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">AACCAGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>12</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-01-25 17:06:39.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.01.12</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16693.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16693.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1756</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>20448</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX014409" center_name="BI" alias="22760.WR20451.454-3519.720565091208.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX014409</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22760.WR20451.454-3519.720565091208.P</SUBMITTER_ID>
      <UUID>fe824651-093c-4572-9c38-d5dd6e7a5022</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-3519' containing sample 'BROAD:SEQUENCING_SAMPLE:17330.0'</TITLE>
    <STUDY_REF accession="SRP001638">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001638</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41961</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bilophila sp. 4_1_30">Reference genome for Human Microbiome project Bilophila_sp_4_1_30_ltp_HMPREF0178_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002791">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002791</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17330.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-3519</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="350"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">TCTTGGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>12</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-01-25 17:06:39.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.0.01.12</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17330.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17330.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1750</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>20451</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX015197" center_name="BI" alias="22769.WR20447.454-3536.722809091228.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX015197</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22769.WR20447.454-3536.722809091228.S</SUBMITTER_ID>
      <UUID>713ab226-11ad-4362-a5d7-bfd135836ece</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-3536' containing sample 'BROAD:SEQUENCING_SAMPLE:16693.0'</TITLE>
    <STUDY_REF accession="SRP001277">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001277</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA39393</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Lachnospiraceae bacterium 4_1_37FAA">Reference genome for the Human Microbiome Project Lachnospiraceae_bacterium_4_1_37FAA_ltp_HMPREF0985_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002794">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002794</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16693.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-3536</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">AGTCGAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>12</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-12-29 13:22:12.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16693.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16693.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1756</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>20447</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX015654" center_name="BI" alias="22804.WR20550.454-3589.722492100111.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX015654</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22804.WR20550.454-3589.722492100111.S</SUBMITTER_ID>
      <UUID>1628542b-2aac-4443-8aa1-07fd570dc985</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-3589' containing sample 'BROAD:SEQUENCING_SAMPLE:17325.0'</TITLE>
    <STUDY_REF accession="SRP001639">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001639</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41959</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bifidobacterium sp. 12_1_47BFAA">Reference genome for Human Microbiome Project Bifidobacterium_sp_12_1_47BFAA_ltp_HMPREF0177_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002811">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002811</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17325.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-3589</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">TTCAGGTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-01-12 22:17:49.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Alignment and Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17325.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17325.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1748</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>20550</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX015655" center_name="BI" alias="22821.WR20544.454-2827.722492100111.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX015655</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22821.WR20544.454-2827.722492100111.S</SUBMITTER_ID>
      <UUID>1c394215-62a4-454c-8a9f-7b7b81cd6955</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-2827' containing sample 'BROAD:SEQUENCING_SAMPLE:16675.0'</TITLE>
    <STUDY_REF accession="SRP001658">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001658</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41983</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Erysipelotrichaceae bacterium 2_2_44A">Reference genome for Human Microbiome Project Erysipelotrichaceae_bacterium_2_2_44A_ltp_HMPREF9022_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002826">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002826</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16675.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-2827</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TAGGAATC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-01-12 22:17:49.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16675.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16675.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2112</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>20544</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX015705" center_name="BI" alias="22800.WR20551.454-3590.722019100112.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX015705</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22800.WR20551.454-3590.722019100112.S</SUBMITTER_ID>
      <UUID>bd84fd1b-3f22-40ee-a5bd-03e74df737b1</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-3590' containing sample 'BROAD:SEQUENCING_SAMPLE:17331.0'</TITLE>
    <STUDY_REF accession="SRP001648">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001648</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41973</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Enterobacteriaceae bacterium 9_2_54FAA">Reference genome for Human Microbiome Project Enterobacteriaceae_bacterium_9_2_54FAA_ltp_HMPREF0864_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002804">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002804</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:17331.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-3590</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">TTCGCCGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-01-13 21:10:18.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17331.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17331.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1762</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>20551</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX015878" center_name="BI" alias="22809.WR20542.454-3586.720936100114.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX015878</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22809.WR20542.454-3586.720936100114.P</SUBMITTER_ID>
      <UUID>1d04fb7a-87d7-4b6b-9987-d774ce3c8fcb</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-3586' containing sample 'BROAD:SEQUENCING_SAMPLE:16657.0'</TITLE>
    <STUDY_REF accession="SRP001642">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001642</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41955</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides sp. 1_1_30">Reference genome for Human Microbiome Project Bacteroides_sp_1_1_30_ltp_HMPREF0127_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002808">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002808</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16657.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-3586</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="406"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">AAGGTGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>12</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-01-19 11:50:20.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Alignment and Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16657.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16657.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1747</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>20542</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX015979" center_name="BI" alias="22821.WR20545.454-3588.720936100114.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX015979</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22821.WR20545.454-3588.720936100114.P</SUBMITTER_ID>
      <UUID>d06b3e22-6976-4548-8361-f694bb763f01</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA paired-end library '454-3588' containing sample 'BROAD:SEQUENCING_SAMPLE:16675.0'</TITLE>
    <STUDY_REF accession="SRP001658">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001658</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41983</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Erysipelotrichaceae bacterium 2_2_44A">Reference genome for Human Microbiome Project Erysipelotrichaceae_bacterium_2_2_44A_ltp_HMPREF9022_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002826">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002826</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16675.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-3588</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="405"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">TAATCTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>12</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-01-19 11:50:20.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16675.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16675.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2112</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>20545</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX020244" center_name="BI" alias="22816.WR21247.454-4166.729839100416.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX020244</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22816.WR21247.454-4166.729839100416.S</SUBMITTER_ID>
      <UUID>fcd716b6-2d8a-4d32-966d-ed4a6622d5c6</UUID>
    </IDENTIFIERS>
    <TITLE>Genome sequencing of Fusobacterium sp. 4_8 for the Human Microbiome Project</TITLE>
    <STUDY_REF accession="SRP001680">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001680</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32481</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 4_8">Reference genome for the Human Microbiome Project Fusobacterium_nucleatum_subsp_animalis_4_8_ltp_HMPREF0409_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>low coverage on 454</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS072640">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS072640</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:37277.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-4166</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="6" base_coord="5">
              <BASECALL min_match="6" max_mismatch="0" match_edge="full">CCTCTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>11</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-04-19 04:59:29.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Alignment and Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>37277.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:37277.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2852</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>21247</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX020245" center_name="BI" alias="22816.WR21247.454-4166.729839100416.2.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX020245</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22816.WR21247.454-4166.729839100416.2.S</SUBMITTER_ID>
      <UUID>0ab9a6ac-c1f2-474e-af18-e4ee71dd7f70</UUID>
    </IDENTIFIERS>
    <TITLE>Genome sequencing of Fusobacterium sp. 4_8 for the Human Microbiome Project</TITLE>
    <STUDY_REF accession="SRP001680">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001680</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32481</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 4_8">Reference genome for the Human Microbiome Project Fusobacterium_nucleatum_subsp_animalis_4_8_ltp_HMPREF0409_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>low coverage on 454</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS072640">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS072640</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:37277.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-4166</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="6" base_coord="5">
              <BASECALL min_match="6" max_mismatch="0" match_edge="full">CCTCTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>11</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-04-19 04:59:29.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
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        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Alignment and Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>37277.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:37277.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2852</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>21247</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX020246" center_name="BI" alias="22816.WR21248.454-4239.729839100416.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX020246</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22816.WR21248.454-4239.729839100416.P</SUBMITTER_ID>
      <UUID>7da7f85c-58ca-4ee8-a695-5ea423cc952d</UUID>
    </IDENTIFIERS>
    <TITLE>Genome sequencing of Fusobacterium sp. 4_8 for the Human Microbiome Project</TITLE>
    <STUDY_REF accession="SRP001680">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001680</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32481</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 4_8">Reference genome for the Human Microbiome Project Fusobacterium_nucleatum_subsp_animalis_4_8_ltp_HMPREF0409_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>low coverage on 454</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS072640">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS072640</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:37277.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-4239</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="376"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="6" base_coord="5">
              <BASECALL min_match="6" max_mismatch="0" match_edge="full">CCTCTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>11</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-04-19 04:59:29.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Alignment and Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>37277.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:37277.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2852</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>21248</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX020247" center_name="BI" alias="23037.WR21243.454-4164.726910100415.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX020247</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23037.WR21243.454-4164.726910100415.S</SUBMITTER_ID>
      <UUID>1f5b2ec9-6a2b-442e-ba8a-e89d641246b3</UUID>
    </IDENTIFIERS>
    <TITLE>Genome sequencing of Fusobacterium sp. 11_3_2 on 454 for the HMP Pilot project</TITLE>
    <STUDY_REF accession="SRP001776">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001776</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA39559</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 11_3_2">Reference genome for Human Microbiome Project Fusobacterium_nucleatum_subsp_animalis_11_3_2_ltp_HMPREF0401_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>low coverage on 454</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002800">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002800</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 11_3_2</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-4164</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">ACCGTAATC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-04-17 19:19:00.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Alignment and Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>36688.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:36688.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2228</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>21243</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX020248" center_name="BI" alias="23037.WR21244.454-4237.727844100408.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX020248</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23037.WR21244.454-4237.727844100408.P</SUBMITTER_ID>
      <UUID>b36370ab-6984-413d-ab52-633f550d7274</UUID>
    </IDENTIFIERS>
    <TITLE>Genome sequencing of Fusobacterium sp. 11_3_2 on 454 for the HMP Pilot project</TITLE>
    <STUDY_REF accession="SRP001776">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001776</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA39559</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 11_3_2">Reference genome for Human Microbiome Project Fusobacterium_nucleatum_subsp_animalis_11_3_2_ltp_HMPREF0401_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>low coverage on 454</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002800">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002800</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 11_3_2</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-4237</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="430"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">ACCGAATAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-04-13 14:27:47.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Alignment and Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>36688.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:36688.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2228</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>21244</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX025798" center_name="BI" alias="22795.WR21657.454-4372.730997100524.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX025798</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22795.WR21657.454-4372.730997100524.S</SUBMITTER_ID>
      <UUID>170df42a-386c-4886-9828-1a92cbcabb26</UUID>
    </IDENTIFIERS>
    <TITLE>Genome Sequencing of Fusobacterium sp. 12_1B</TITLE>
    <STUDY_REF accession="SRP001624">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001624</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32471</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium ulcerans 12-1B">Reference genome for the Human Microbiome Project Fusobacterium_ulcerans_12_1B_12_1B_ltp_HMPREF0402_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>low coverage of genome on 454</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS107454">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS107454</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 12_1B</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-4372</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="6" base_coord="5">
              <BASECALL min_match="6" max_mismatch="0" match_edge="full">ACTTGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>11</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-07-23 15:51:10.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Alignment and Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>39753.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:39753.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2853</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>21657</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX025799" center_name="BI" alias="22795.WR21658.454-4585.731026100602.3.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX025799</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22795.WR21658.454-4585.731026100602.3.P</SUBMITTER_ID>
      <UUID>b0171311-3961-46bd-82ea-8f1410b7eb6c</UUID>
    </IDENTIFIERS>
    <TITLE>Genome Sequencing of Fusobacterium sp. 12_1B</TITLE>
    <STUDY_REF accession="SRP001624">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001624</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32471</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium ulcerans 12-1B">Reference genome for the Human Microbiome Project Fusobacterium_ulcerans_12_1B_12_1B_ltp_HMPREF0402_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>low coverage of genome on 454</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS107454">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS107454</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 12_1B</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-4585</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="380"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">TCCTTCCAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL min_match="40" max_mismatch="5" match_edge="full">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL min_match="38" max_mismatch="5" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-07-23 14:55:15.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Alignment and Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>39753.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:39753.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2853</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>21658</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX029334" center_name="BI" alias="22760.WR23439.454-5337.742974101022.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX029334</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22760.WR23439.454-5337.742974101022.S</SUBMITTER_ID>
      <UUID>de142d92-25ff-4bd1-8063-5acb7e2c9963</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of genomic DNA library '454-5337' containing sample 'BROAD:SEQUENCING_SAMPLE:17330.0'</TITLE>
    <STUDY_REF accession="SRP001638">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001638</PRIMARY_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bilophila sp. 4_1_30">Reference genome for Human Microbiome project Bilophila_sp_4_1_30_ltp_HMPREF0178_WGS_Monoisolate</EXTERNAL_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA41961</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>15x fragment; 30x physical paired</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002791">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002791</PRIMARY_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-5337</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL read_group_tag="Colombo" min_match="9" max_mismatch="0" match_edge="full">ACCGTAATC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-10-23 02:47:12.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17330.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17330.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1750</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>23439</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX044047" center_name="BI" alias="127707.WR24334.Pond-52417.B00CBABXX110128.tagged_954.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX044047</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">127707.WR24334.Pond-52417.B00CBABXX110128.tagged_954.P</SUBMITTER_ID>
      <UUID>09666c9e-33df-46ed-9754-4fdb1c46b133</UUID>
    </IDENTIFIERS>
    <TITLE>Genome Sequencing of Anopheles gambiae</TITLE>
    <STUDY_REF accession="SRP006512">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP006512</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA60385</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Anopheles gambiae">Anopheles gambiae ltp_EWC_WGS_Multiisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Anopheles gambiae via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS190351">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS190351</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA60385.S15</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Pond-52417</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="135"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>210</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="102">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">TTCGCTGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>110</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-02-07 18:52:16.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA 1.7.48.1</VERSION>
          <NOTES>Sequencer Application 1.1.37.19</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>76584.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:76584.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G8776</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>24334</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX044048" center_name="BI" alias="123624.WR25244.Solexa-63003.B082BABXX110425.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX044048</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">123624.WR25244.Solexa-63003.B082BABXX110425.P</SUBMITTER_ID>
      <UUID>b0f0a9b8-969c-45ea-ba02-47cd0ba1e060</UUID>
    </IDENTIFIERS>
    <TITLE>Genome Sequencing and Assembly of a male Mustela putorius furo (Domestic Ferret).</TITLE>
    <STUDY_REF accession="SRP000536">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP000536</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA78213</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Mustela putorius furo">Mustela putorius furo Genome Sequencing Male ltp_MQ7_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>180bp Illumina Fragment Library.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS281517">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS281517</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA167910.FERRET_4666</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-63003</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="180" NOMINAL_SDEV="37.8794225"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-05-04 01:59:19.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.10.36</VERSION>
          <NOTES>Sequencer Application 1.3.8</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>92457.6</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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          <PRIMARY_ID>SRS212618</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Simonsiella muelleri ATCC 29453</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Pond-62008</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="96" NOMINAL_SDEV="0.0E0"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>210</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="102">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">GTCTGATG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>110</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-05-05 13:32:34.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.10.36</VERSION>
          <NOTES>Sequencer Application 1.3.8</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>89626.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:89626.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12588</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>24988</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX086743" center_name="BI" alias="235197.WR25126.0109339568.748398110415.Zagreb.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX086743</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">235197.WR25126.0109339568.748398110415.Zagreb.S</SUBMITTER_ID>
      <UUID>63b48eef-3a99-405c-9f6d-8781f1dc1e2a</UUID>
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    <TITLE>454 whole genome shotgun sequencing of metagenomic library '0109339568' containing sample '10882-ST-14'</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA63661</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Metagenome from Infant Gut Samples">Microbial composition of samples from infant gut human_metagenome_ltp_G9M_WGS_Environment</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS414170">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS414170</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828283</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Broad Institute">10882-ST-14</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109339568</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
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            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">AGACCTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="12">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>30</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-04-16 05:58:28.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
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        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Standard 454 Base Calling</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gene</TAG>
        <VALUE>16S V3-V5 region</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>97674.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>library_strategy</TAG>
        <VALUE>targeted-locus</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97674.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12864</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX086744" center_name="BI" alias="235197.WR25126.0109339562.748738110623.Bangui.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX086744</PRIMARY_ID>
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    <TITLE>454 whole genome shotgun sequencing of metagenomic library '0109339562' containing sample '10911-ST-5'</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA63661</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Metagenome from Infant Gut Samples">Microbial composition of samples from infant gut human_metagenome_ltp_G9M_WGS_Environment</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS414109">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS414109</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828403</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Broad Institute">10911-ST-5</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109339562</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">AGTTGGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="12">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>30</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-06-24 16:22:45.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
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        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Standard 454 Base Calling</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gene</TAG>
        <VALUE>16S V3-V5 region</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>97668.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>library_strategy</TAG>
        <VALUE>targeted-locus</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97668.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12858</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX086745" center_name="BI" alias="235197.WR25450.0109389173.748738110623.Bhopal.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX086745</PRIMARY_ID>
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    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of metagenomic library '0109389173' containing sample '10591-ST-8'</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA63661</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Metagenome from Infant Gut Samples">Microbial composition of samples from infant gut human_metagenome_ltp_G9M_WGS_Environment</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS414173</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828412</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Broad Institute">10591-ST-8</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109389173</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
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      <SPOT_DESCRIPTOR>
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            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="10" base_coord="5">
              <BASECALL min_match="10" max_mismatch="0" match_edge="full">AATACCGAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-06-24 16:22:45.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>gene</TAG>
        <VALUE>16S V3-V5 region</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>97824.2</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>library_strategy</TAG>
        <VALUE>targeted-locus</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97824.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G13014</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25450</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
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  <EXPERIMENT accession="SRX086998" center_name="BI" alias="235197.WR25125.0109340407.747197110413.Ufa.S">
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      <PRIMARY_ID>SRX086998</PRIMARY_ID>
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    <TITLE>454 whole genome shotgun sequencing of metagenomic library '0109340407' containing sample '10092-ST-5'</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
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      </IDENTIFIERS>
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    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of unclassified sequences via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS372682</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA218187.10092-ST-5</SUBMITTER_ID>
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        <LIBRARY_NAME>0109340407</LIBRARY_NAME>
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        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <SINGLE/>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="10" base_coord="5">
              <BASECALL min_match="10" max_mismatch="0" match_edge="full">AACGCCGGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>33</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
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    <PROCESSING>
      <PIPELINE>
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            <READ_INDEX>3</READ_INDEX>
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        <SPOT_DECODE_SPEC>
          <READ_SPEC>
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            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
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            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">AACCTTATC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="14">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>25127</VALUE>
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  </EXPERIMENT>
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          <READ_SPEC>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">TCCGGAAGGC</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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        </SPOT_DECODE_SPEC>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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        <TAG>work_request</TAG>
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    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
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      <PRIMARY_ID>SRX087009</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>454 sequencing of unclassified sequences via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <READ_SPEC>
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            <READ_TYPE>BarCode</READ_TYPE>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">TTCAACGGTC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">TCCGGAAGGC</BASECALL>
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          <READ_SPEC>
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              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Genomic DNA</VALUE>
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            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
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            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="6" base_coord="5">
              <BASECALL min_match="6" max_mismatch="0" match_edge="full">CGTGAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="11">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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      <PIPELINE>
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      <EXPERIMENT_ATTRIBUTE>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12756</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25128</VALUE>
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    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <EXTERNAL_ID namespace="biosample">SAMN01828361</EXTERNAL_ID>
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          <SINGLE/>
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      <SPOT_DESCRIPTOR>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
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              <BASECALL min_match="9" max_mismatch="0" match_edge="full">TGGTTGGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="14">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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      <PIPELINE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12940</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
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      <PRIMARY_ID>SRX087326</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">ACCGTTGTTC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">AACCTTCTTC</BASECALL>
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              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Genomic DNA</VALUE>
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      <LS454>
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        <SPOT_DECODE_SPEC>
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            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
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            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">CCGAACGAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="14">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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            <READ_INDEX>2</READ_INDEX>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="12">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="8" max_mismatch="0" match_edge="full">ACACGGAC</BASECALL>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="10" base_coord="5">
              <BASECALL min_match="10" max_mismatch="0" match_edge="full">TTCGTTCTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>33</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
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    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      </PIPELINE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12795</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25125</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX087855" center_name="BI" alias="235197.WR25125.0109340408.747197110413.Linyi.S">
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      <PRIMARY_ID>SRX087855</PRIMARY_ID>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
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      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of unclassified sequences via polymerase chain reaction</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS372556</PRIMARY_ID>
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        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <SINGLE/>
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      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
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            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="10" base_coord="5">
              <BASECALL min_match="10" max_mismatch="0" match_edge="full">AACCTTCTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97603.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12793</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25125</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX087856" center_name="BI" alias="235197.WR25126.0109339553.748741110620.Paris.S">
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      <PRIMARY_ID>SRX087856</PRIMARY_ID>
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    <TITLE>454 whole genome shotgun sequencing of metagenomic library '0109339553' containing sample '10471-ST-11'</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
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    </STUDY_REF>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS414127</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828349</EXTERNAL_ID>
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          <SINGLE/>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
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              <BASECALL min_match="7" max_mismatch="0" match_edge="full">TCCGCTC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="12">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97684.1</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12874</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
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      <PRIMARY_ID>SRX087857</PRIMARY_ID>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
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              <BASECALL min_match="8" max_mismatch="0" match_edge="full">CCGGTCGC</BASECALL>
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          <READ_SPEC>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
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            <READ_LABEL>forward</READ_LABEL>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Genomic DNA</VALUE>
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          <READ_SPEC>
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              <BASECALL min_match="7" max_mismatch="0" match_edge="full">AAGGTGC</BASECALL>
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        </LIBRARY_LAYOUT>
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      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
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            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">TTGTTGGAC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="14">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>25127</VALUE>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">TGGTCCGTTC</BASECALL>
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          <READ_SPEC>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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        <TAG>work_request</TAG>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="8" max_mismatch="0" match_edge="full">ACTAATTC</BASECALL>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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              <BASECALL min_match="7" max_mismatch="0" match_edge="full">AGTCGAC</BASECALL>
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        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
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            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
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            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="11" base_coord="5">
              <BASECALL min_match="11" max_mismatch="0" match_edge="full">TCGAACCGGAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="16">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
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          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25127</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
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      <DESIGN_DESCRIPTION>454 sequencing of unclassified sequences via polymerase chain reaction</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
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          <SINGLE/>
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      <SPOT_DESCRIPTOR>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
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            <READ_TYPE>BarCode</READ_TYPE>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">TCCGAACAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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    <PROCESSING>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>targeted-locus</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97621.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12811</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25125</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX087882" center_name="BI" alias="235197.WR25125.0109340382.747197110413.Lagos.S">
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      <PRIMARY_ID>SRX087882</PRIMARY_ID>
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    <TITLE>454 whole genome shotgun sequencing of metagenomic library '0109340382' containing sample '10101-ST-8'</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
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    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of unclassified sequences via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="10" base_coord="5">
              <BASECALL min_match="10" max_mismatch="0" match_edge="full">ACGGAACAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>targeted-locus</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97626.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12816</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25125</VALUE>
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      <PRIMARY_ID>SRX087883</PRIMARY_ID>
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      <IDENTIFIERS>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
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          <READ_SPEC>
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              <BASECALL min_match="11" max_mismatch="0" match_edge="full">AACGTTCGTTC</BASECALL>
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          <READ_SPEC>
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              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Genomic DNA</VALUE>
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          <READ_SPEC>
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          <READ_SPEC>
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      <LS454>
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        <SPOT_DECODE_SPEC>
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            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
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            <READ_CLASS>Technical Read</READ_CLASS>
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            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">TCGGATTAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="14">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25127</VALUE>
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    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">TTCGGCCTTC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Genomic DNA</VALUE>
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        <TAG>work_request</TAG>
        <VALUE>25127</VALUE>
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      <DESIGN_DESCRIPTION>454 sequencing of unclassified sequences via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">ACCGTTGTTC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
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      <LS454>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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              <BASECALL min_match="7" max_mismatch="0" match_edge="full">TCTTGGC</BASECALL>
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              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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      <EXPERIMENT_ATTRIBUTE>
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      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
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            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">AAGCCGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="12">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>30</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
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    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      </PIPELINE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12856</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
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      <PRIMARY_ID>SRX087907</PRIMARY_ID>
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      <IDENTIFIERS>
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    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of unclassified sequences via polymerase chain reaction</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
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        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <SINGLE/>
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      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
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            <READ_TYPE>BarCode</READ_TYPE>
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              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TATTCGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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      <PIPELINE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97699.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12889</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
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      <PRIMARY_ID>SRX087908</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <EXTERNAL_ID namespace="biosample">SAMN01828306</EXTERNAL_ID>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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            <READ_TYPE>BarCode</READ_TYPE>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">TTAATGGAAC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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      <LS454>
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      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97636.1</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12826</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25125</VALUE>
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      <PRIMARY_ID>SRX087909</PRIMARY_ID>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
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              <BASECALL min_match="11" max_mismatch="0" match_edge="full">ACCTTCCGGAC</BASECALL>
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          <READ_SPEC>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="16">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
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      <LS454>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
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          <READ_SPEC>
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              <BASECALL min_match="7" max_mismatch="0" match_edge="full">AGTCGAC</BASECALL>
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              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
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      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">CCTTCCGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>31</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
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    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      </PIPELINE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>targeted-locus</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12926</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
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      <PRIMARY_ID>SRX088571</PRIMARY_ID>
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      <IDENTIFIERS>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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      </SAMPLE_DESCRIPTOR>
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          <SINGLE/>
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      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
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            <READ_LABEL>barcode</READ_LABEL>
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            <READ_TYPE>BarCode</READ_TYPE>
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              <BASECALL min_match="8" max_mismatch="0" match_edge="full">CTTCCTTC</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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    <PROCESSING>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
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    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
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      <PRIMARY_ID>SRX088572</PRIMARY_ID>
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    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of unclassified sequences via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS372652</PRIMARY_ID>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
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            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="10" base_coord="5">
              <BASECALL min_match="10" max_mismatch="0" match_edge="full">TCGGAAGTTC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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      <LS454>
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      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>targeted-locus</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97610.1</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12800</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25125</VALUE>
      </EXPERIMENT_ATTRIBUTE>
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      <PRIMARY_ID>SRX088573</PRIMARY_ID>
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      <IDENTIFIERS>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <EXTERNAL_ID namespace="biosample">SAMN01828368</EXTERNAL_ID>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
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          <READ_SPEC>
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            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
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              <BASECALL min_match="7" max_mismatch="0" match_edge="full">CCAGGAC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="12">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
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      <LS454>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
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          <READ_SPEC>
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              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TTGACAAC</BASECALL>
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              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
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            <READ_LABEL>forward</READ_LABEL>
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        <SPOT_DECODE_SPEC>
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          <READ_SPEC>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">TCCAATTAAC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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        </SPOT_DECODE_SPEC>
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              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
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        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
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            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="10" base_coord="5">
              <BASECALL min_match="10" max_mismatch="0" match_edge="full">TTCGGCCTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
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      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25125</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
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      <PRIMARY_ID>SRX088597</PRIMARY_ID>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS414168</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828312</EXTERNAL_ID>
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          <SINGLE/>
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      <SPOT_DESCRIPTOR>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
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          <READ_SPEC>
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              <BASECALL min_match="8" max_mismatch="0" match_edge="full">CCACGGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12917</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
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      <PRIMARY_ID>SRX088598</PRIMARY_ID>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS414163</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828377</EXTERNAL_ID>
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            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TGACCGTC</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
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      <LS454>
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      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>targeted-locus</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97719.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12909</VALUE>
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        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="8" max_mismatch="0" match_edge="full">AACACAAC</BASECALL>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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              <BASECALL min_match="11" max_mismatch="0" match_edge="full">AACGTTCGTTC</BASECALL>
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        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
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            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="6" base_coord="5">
              <BASECALL min_match="6" max_mismatch="0" match_edge="full">ACGCGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="11">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>29</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12850</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
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      <PRIMARY_ID>SRX088610</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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      <SPOT_DESCRIPTOR>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
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            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">AATGGTAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12892</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
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      <PRIMARY_ID>SRX088611</PRIMARY_ID>
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      <IDENTIFIERS>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS414195</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828348</EXTERNAL_ID>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
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            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
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              <BASECALL min_match="9" max_mismatch="0" match_edge="full">TGGAACCAC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="14">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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      <LS454>
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      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25125</VALUE>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
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          <READ_SPEC>
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              <BASECALL min_match="6" max_mismatch="0" match_edge="full">TCACAC</BASECALL>
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          <READ_SPEC>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="11">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
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            <READ_LABEL>forward</READ_LABEL>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Genomic DNA</VALUE>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
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          <READ_SPEC>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
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              <BASECALL min_match="7" max_mismatch="0" match_edge="full">CGGTATC</BASECALL>
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          <READ_SPEC>
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            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
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              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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      <EXPERIMENT_ATTRIBUTE>
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              <BASECALL min_match="9" max_mismatch="0" match_edge="full">TCCGGTCAC</BASECALL>
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        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109339552</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
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            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
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            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">TATTGAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="12">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
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            <BASE_COORD>30</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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      <EXPERIMENT_ATTRIBUTE>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
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      <PRIMARY_ID>SRX088623</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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      </SAMPLE_DESCRIPTOR>
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          <SINGLE/>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
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          <READ_SPEC>
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              <BASECALL min_match="7" max_mismatch="0" match_edge="full">ACGGCTC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="12">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
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        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
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      <PRIMARY_ID>SRX088624</PRIMARY_ID>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS414199</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828393</EXTERNAL_ID>
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            <READ_TYPE>BarCode</READ_TYPE>
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              <BASECALL min_match="9" max_mismatch="0" match_edge="full">TCGGACCGC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="14">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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      <LS454>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TTCTTGAC</BASECALL>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Genomic DNA</VALUE>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="8" max_mismatch="0" match_edge="full">AGTCCGTC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS414200</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828365</EXTERNAL_ID>
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        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109403971</LIBRARY_NAME>
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        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
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            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="10" base_coord="5">
              <BASECALL min_match="10" max_mismatch="0" match_edge="full">AAGGAACTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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        <TAG>work_request</TAG>
        <VALUE>25127</VALUE>
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    </EXPERIMENT_ATTRIBUTES>
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      <PRIMARY_ID>SRX089028</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">CGGAACGGAC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
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      <PIPELINE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>25127</VALUE>
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      <PRIMARY_ID>SRX089029</PRIMARY_ID>
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    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of unclassified sequences via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS372589</PRIMARY_ID>
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          <READ_SPEC>
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            <READ_TYPE>BarCode</READ_TYPE>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">AATAACCGTC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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      <LS454>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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        <VALUE>25125</VALUE>
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      <DESIGN_DESCRIPTION>454 sequencing of unclassified sequences via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="9" max_mismatch="0" match_edge="full">TTCAAGGAC</BASECALL>
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              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">AACTTCGGTC</BASECALL>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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      <LS454>
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              <BASECALL match_edge="full" max_mismatch="0" min_match="6">TGAAGC</BASECALL>
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              <BASECALL match_edge="full" max_mismatch="14" min_match="4">CCGTCAATTCMTTTRAGT</BASECALL>
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      <EXPERIMENT_ATTRIBUTE>
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      <DESIGN_DESCRIPTION>454 sequencing of unclassified sequences via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="9" max_mismatch="0" match_edge="full">TCGGACCGC</BASECALL>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="14">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
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        <VALUE>Genomic DNA</VALUE>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">AGGTTCCGAC</BASECALL>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">ACGAATTAAC</BASECALL>
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              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS414207</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828437</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Broad Institute">10061-ST-11</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109340442</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
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            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">TTCTTCGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="14">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>32</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      </PIPELINE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12751</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25125</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX089041</PRIMARY_ID>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
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    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS414208</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828363</EXTERNAL_ID>
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        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109340372</LIBRARY_NAME>
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        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <SINGLE/>
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      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
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            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="10" base_coord="5">
              <BASECALL min_match="10" max_mismatch="0" match_edge="full">TAACCGGATC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-04-16 01:07:35.0</STEP_INDEX>
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      </PIPELINE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>gene</TAG>
        <VALUE>16S V3-V5 region</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>targeted-locus</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97635.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12825</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25125</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
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  <EXPERIMENT accession="SRX089042" center_name="BI" alias="235197.WR25127.0109403994.747125110413.Kunming.S">
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      <PRIMARY_ID>SRX089042</PRIMARY_ID>
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    <TITLE>454 whole genome shotgun sequencing of metagenomic library '0109403994' containing sample '10481-ST-8'</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
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      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS414209</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828387</EXTERNAL_ID>
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      </SAMPLE_DESCRIPTOR>
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        <LIBRARY_NAME>0109403994</LIBRARY_NAME>
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          <SINGLE/>
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      <SPOT_DESCRIPTOR>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">TTCTTCGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="14">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>16S V3-V5 region</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>97756.1</VALUE>
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        <VALUE>targeted-locus</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97756.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12946</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25127</VALUE>
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  </EXPERIMENT>
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      <PRIMARY_ID>SRX089043</PRIMARY_ID>
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        <PRIMARY_ID>SRP001634</PRIMARY_ID>
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    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of unclassified sequences via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS372602</PRIMARY_ID>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
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          <READ_SPEC>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">TTCACGGAAC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
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      <LS454>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
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          <READ_SPEC>
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              <BASECALL min_match="6" max_mismatch="0" match_edge="full">ACTTGC</BASECALL>
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          <READ_SPEC>
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            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="11">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>29</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12847</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX089285</PRIMARY_ID>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <EXTERNAL_ID namespace="biosample">SAMN01828395</EXTERNAL_ID>
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      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109339566</LIBRARY_NAME>
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        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
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          <SINGLE/>
        </LIBRARY_LAYOUT>
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      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
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            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
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            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">TGACGAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="12">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>30</BASE_COORD>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12862</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
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      <PRIMARY_ID>SRX089286</PRIMARY_ID>
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    <TITLE>454 whole genome shotgun sequencing of metagenomic library '0109339528' containing sample '10501-ST-14'</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
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    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS414212</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828341</EXTERNAL_ID>
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        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109339528</LIBRARY_NAME>
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          <SINGLE/>
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      <SPOT_DESCRIPTOR>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TCCAAGTC</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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      </SPOT_DESCRIPTOR>
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      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-06-21 07:36:41.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12899</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
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      <PRIMARY_ID>SRX089287</PRIMARY_ID>
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    <TITLE>454 whole genome shotgun sequencing of metagenomic library '0109340443' containing sample '10141-ST-14'</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS414213</PRIMARY_ID>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
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          <READ_SPEC>
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            <READ_LABEL>barcode</READ_LABEL>
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            <READ_TYPE>BarCode</READ_TYPE>
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              <BASECALL min_match="9" max_mismatch="0" match_edge="full">AGGTCCTTC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="14">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
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            <READ_TYPE>Forward</READ_TYPE>
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      <LS454>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
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      <PRIMARY_ID>SRX089288</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>454 sequencing of unclassified sequences via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS371667</PRIMARY_ID>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
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          <READ_SPEC>
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            <READ_LABEL>barcode</READ_LABEL>
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            <READ_TYPE>BarCode</READ_TYPE>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">AACCGGATAC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
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      <PIPELINE>
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          <PROGRAM>454BaseCaller</PROGRAM>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>16S V3-V5 region</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
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    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of unclassified sequences via polymerase chain reaction</DESIGN_DESCRIPTION>
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        <LIBRARY_NAME>0109340420</LIBRARY_NAME>
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        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">ACGAACCGAC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
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        <TAG>work_request</TAG>
        <VALUE>25125</VALUE>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
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      <EXPERIMENT_ATTRIBUTE>
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              <BASECALL min_match="11" max_mismatch="0" match_edge="full">CGGACCGGAAC</BASECALL>
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              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TTATCGGC</BASECALL>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">ACTCCTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="12">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>30</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12881</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
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    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
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      <PRIMARY_ID>SRX089311</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <SINGLE/>
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      <SPOT_DESCRIPTOR>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
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              <BASECALL min_match="11" max_mismatch="0" match_edge="full">ACCGGACCGTC</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="16">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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    <PROCESSING>
      <PIPELINE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12844</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25125</VALUE>
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    </EXPERIMENT_ATTRIBUTES>
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      <PRIMARY_ID>SRX089312</PRIMARY_ID>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS414227</PRIMARY_ID>
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              <BASECALL min_match="9" max_mismatch="0" match_edge="full">TGTCCGGTC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="14">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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      <LS454>
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      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <PRIMARY_ID>SRX089313</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
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              <BASECALL min_match="9" max_mismatch="0" match_edge="full">AGGTCCTTC</BASECALL>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="14">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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            <READ_INDEX>3</READ_INDEX>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">CCGTCGGTTC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
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      <LS454>
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    <TITLE>454 whole genome shotgun sequencing of metagenomic library '0109339574' containing sample '10871-ST-5'</TITLE>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="6" max_mismatch="0" match_edge="full">AGACAC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="11">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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            <READ_INDEX>3</READ_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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            <EXPECTED_BASECALL_TABLE base_coord="1" default_length="4">
              <BASECALL match_edge="full" max_mismatch="0" min_match="4">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE base_coord="5" default_length="6">
              <BASECALL match_edge="full" max_mismatch="0" min_match="6">AGACAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE base_coord="11" default_length="18">
              <BASECALL match_edge="full" max_mismatch="14" min_match="4">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>29</BASE_COORD>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12913</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25128</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
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      <PRIMARY_ID>SRX089324</PRIMARY_ID>
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      <IDENTIFIERS>
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    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of unclassified sequences via polymerase chain reaction</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
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        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <SINGLE/>
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      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="10" base_coord="5">
              <BASECALL min_match="10" max_mismatch="0" match_edge="full">TTACGAATTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>33</BASE_COORD>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>gene</TAG>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97611.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12801</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25125</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX089325" center_name="BI" alias="235197.WR25125.0109340393.747197110413.Kwangchu.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX089325</PRIMARY_ID>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
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      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of unclassified sequences via polymerase chain reaction</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS372663</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA218187.10241-ST-21</SUBMITTER_ID>
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        <LIBRARY_NAME>0109340393</LIBRARY_NAME>
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        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <SINGLE/>
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      <SPOT_DESCRIPTOR>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="10" base_coord="5">
              <BASECALL min_match="10" max_mismatch="0" match_edge="full">TTCCGGCCGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>gene</TAG>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>targeted-locus</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97613.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12803</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25125</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
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      <PRIMARY_ID>SRX089326</PRIMARY_ID>
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      <IDENTIFIERS>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
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            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
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              <BASECALL min_match="9" max_mismatch="0" match_edge="full">AACGGAGTC</BASECALL>
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          <READ_SPEC>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="14">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
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            <READ_TYPE>Forward</READ_TYPE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <PRIMARY_ID>SRX089327</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>454 sequencing of unclassified sequences via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">TTCCAACTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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      <LS454>
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      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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            </IDENTIFIERS>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Langfang">barcode</READ_LABEL>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Linyi">barcode</READ_LABEL>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Liverpool">barcode</READ_LABEL>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Madras">barcode</READ_LABEL>
          </MEMBER>
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              <PRIMARY_ID>SRS414206</PRIMARY_ID>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Mashhad">barcode</READ_LABEL>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Mecca">barcode</READ_LABEL>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Nagpur">barcode</READ_LABEL>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Naples">barcode</READ_LABEL>
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            <IDENTIFIERS>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Okara">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Omsk_AACCTTATC" proportion="0.01388889" accession="SRS414106">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414106</PRIMARY_ID>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Omsk">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Padova_TTGTTGGAC" proportion="0.01388889" accession="SRS414134">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414134</PRIMARY_ID>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Padova">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Palembang_TACGGATTC" proportion="0.01388889" accession="SRS414256">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414256</PRIMARY_ID>
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              <EXTERNAL_ID namespace="Broad Institute">10781-ST-8</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Palembang">barcode</READ_LABEL>
          </MEMBER>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS414172</PRIMARY_ID>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Perm">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Praha_AACGGTGGTC" proportion="0.01388889" accession="SRS414118">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414118</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828309</EXTERNAL_ID>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Praha">barcode</READ_LABEL>
          </MEMBER>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Rajshahi">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Recife_ACCGGCGTTC" proportion="0.01388889" accession="SRS414137">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414137</PRIMARY_ID>
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              <EXTERNAL_ID namespace="Broad Institute">10591-ST-21</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Recife">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Rotterdam_CCGTTAATTC" proportion="0.01388889" accession="SRS414262">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414262</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828421</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10111-SN-8</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Rotterdam">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Salvador_TTACGAATTC" proportion="0.01388889" accession="SRS414272">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414272</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828422</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10381-ST-8</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Salvador">barcode</READ_LABEL>
          </MEMBER>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS414267</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828369</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10191-ST-8</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Semarang">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Shaoxing_ACCTCCGTTC" proportion="0.01388889" accession="SRS372727">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS372727</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">PRJNA218187.10381-ST-11</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Shaoxing">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Shiraz_TCGGATTAC" proportion="0.01388889" accession="SRS414143">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414143</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828285</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10491-ST-5</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Shiraz">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Siping_TTCGGACCAC" proportion="0.01388889" accession="SRS414147">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414147</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828419</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10471-ST-8</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Siping">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Surat_TTGTTCGGTC" proportion="0.01388889" accession="SRS414121">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414121</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828400</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10751-ST-8</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Surat">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Tanger_AACGTTCGTTC" proportion="0.01388889" accession="SRS414171">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414171</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828426</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10171-ST-5</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Tanger">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Tangshan_TTATTCCTTC" proportion="0.01388889" accession="SRS414274">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414274</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828353</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10691-ST-14</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Tangshan">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Tianjin_AAGGAACTTC" proportion="0.01388889" accession="SRS414200">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414200</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828365</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10461-ST-8</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Tianjin">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Tianmen_AACTTCGGTC" proportion="0.01388889" accession="SRS414202">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414202</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828335</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10111-SN-14</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Tianmen">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Tonghua_CGGAACGGAC" proportion="0.01388889" accession="SRS414201">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414201</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828317</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10341-ST-14</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Tonghua">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Ufa_AACGCCGGTC" proportion="0.01388889" accession="SRS414107">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414107</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828327</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10361-ST-11</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Ufa">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Urumqi_TTGGCGGAC" proportion="0.01388889" accession="SRS414184">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414184</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828372</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10411-ST-8</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Urumqi">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Venice_AAGAACGTC" proportion="0.01388889" accession="SRS414139">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414139</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828331</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10781-ST-14</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Venice">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Xiangtan_ACGAACCGAC" proportion="0.01388889" accession="SRS414273">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414273</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828270</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10301-ST-14</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Xiangtan">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Yangon_TTCGGCCTTC" proportion="0.01388889" accession="SRS414144">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414144</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828429</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10141-SN-5</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Yangon">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Yokohama_AGGTCCTTC" proportion="0.01388889" accession="SRS414228">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414228</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828272</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10781-ST-21</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Yokohama">barcode</READ_LABEL>
          </MEMBER>
        </POOL>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0090478813</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE base_coord="5">
              <BASECALL read_group_tag="Adana" min_match="9" max_mismatch="0" match_edge="full">CCGAACGAC</BASECALL>
              <BASECALL read_group_tag="Aleppo" min_match="10" max_mismatch="0" match_edge="full">TCCGAACAAC</BASECALL>
              <BASECALL read_group_tag="Alger" min_match="9" max_mismatch="0" match_edge="full">AACTTGGAC</BASECALL>
              <BASECALL read_group_tag="Almaty" min_match="10" max_mismatch="0" match_edge="full">ATTAACGGAC</BASECALL>
              <BASECALL read_group_tag="Bangalore" min_match="10" max_mismatch="0" match_edge="full">CCGTCGGTTC</BASECALL>
              <BASECALL read_group_tag="Belem" min_match="9" max_mismatch="0" match_edge="full">TGGACCTTC</BASECALL>
              <BASECALL read_group_tag="Beograd" min_match="10" max_mismatch="0" match_edge="full">AGGTTCCGAC</BASECALL>
              <BASECALL read_group_tag="Bhopal" min_match="10" max_mismatch="0" match_edge="full">AATACCGAAC</BASECALL>
              <BASECALL read_group_tag="Bombay" min_match="10" max_mismatch="0" match_edge="full">ACCGACCGGC</BASECALL>
              <BASECALL read_group_tag="Bucuresti" min_match="10" max_mismatch="0" match_edge="full">CGGTTCCGTC</BASECALL>
              <BASECALL read_group_tag="Calcutta" min_match="11" max_mismatch="0" match_edge="full">CGGACCGGAAC</BASECALL>
              <BASECALL read_group_tag="Calgary" min_match="9" max_mismatch="0" match_edge="full">TCCGGTCAC</BASECALL>
              <BASECALL read_group_tag="Changchun" min_match="9" max_mismatch="0" match_edge="full">CGGTCCAAC</BASECALL>
              <BASECALL read_group_tag="Chelyabinsk" min_match="9" max_mismatch="0" match_edge="full">AACGCGGAC</BASECALL>
              <BASECALL read_group_tag="Chengdu" min_match="9" max_mismatch="0" match_edge="full">TCGGACCGC</BASECALL>
              <BASECALL read_group_tag="Chiniot" min_match="10" max_mismatch="0" match_edge="full">AATAACCGTC</BASECALL>
              <BASECALL read_group_tag="Cologne" min_match="9" max_mismatch="0" match_edge="full">TTCAAGGAC</BASECALL>
              <BASECALL read_group_tag="Curitiba" min_match="10" max_mismatch="0" match_edge="full">AATTAACAAC</BASECALL>
              <BASECALL read_group_tag="Deyang" min_match="9" max_mismatch="0" match_edge="full">TCGAAGGTC</BASECALL>
              <BASECALL read_group_tag="Donetsk" min_match="10" max_mismatch="0" match_edge="full">ACGACCGTTC</BASECALL>
              <BASECALL read_group_tag="Edinburgh" min_match="10" max_mismatch="0" match_edge="full">TTCCGAGGTC</BASECALL>
              <BASECALL read_group_tag="Esfahan" min_match="10" max_mismatch="0" match_edge="full">TCCAATTAAC</BASECALL>
              <BASECALL read_group_tag="Fulin" min_match="10" max_mismatch="0" match_edge="full">ACCGTTGTTC</BASECALL>
              <BASECALL read_group_tag="Giza" min_match="10" max_mismatch="0" match_edge="full">TCCGGAAGGC</BASECALL>
              <BASECALL read_group_tag="Guadalajara" min_match="10" max_mismatch="0" match_edge="full">CGGACGGTTC</BASECALL>
              <BASECALL read_group_tag="Guayaquil" min_match="10" max_mismatch="0" match_edge="full">AACGGAACGC</BASECALL>
              <BASECALL read_group_tag="Haozhou" min_match="9" max_mismatch="0" match_edge="full">TCCTGGAAC</BASECALL>
              <BASECALL read_group_tag="Harbin" min_match="11" max_mismatch="0" match_edge="full">TCGAACCGGAC</BASECALL>
              <BASECALL read_group_tag="Hefei" min_match="10" max_mismatch="0" match_edge="full">AACCGCCTTC</BASECALL>
              <BASECALL read_group_tag="Hengyang" min_match="10" max_mismatch="0" match_edge="full">TTAATTCCAC</BASECALL>
              <BASECALL read_group_tag="Heze" min_match="10" max_mismatch="0" match_edge="full">CCGACCGAAC</BASECALL>
              <BASECALL read_group_tag="Hiroshima" min_match="11" max_mismatch="0" match_edge="full">AAGGAACCAAC</BASECALL>
              <BASECALL read_group_tag="Huzhou" min_match="10" max_mismatch="0" match_edge="full">TGGTCCGTTC</BASECALL>
              <BASECALL read_group_tag="Istanbul" min_match="10" max_mismatch="0" match_edge="full">TCCAACCGAC</BASECALL>
              <BASECALL read_group_tag="Jilin" min_match="10" max_mismatch="0" match_edge="full">TCGGTCCGGC</BASECALL>
              <BASECALL read_group_tag="Kitakyushu" min_match="10" max_mismatch="0" match_edge="full">TCCGGTCCTC</BASECALL>
              <BASECALL read_group_tag="Kunming" min_match="9" max_mismatch="0" match_edge="full">TTCTTCGTC</BASECALL>
              <BASECALL read_group_tag="Kwangchu" min_match="10" max_mismatch="0" match_edge="full">TTCCGGCCGC</BASECALL>
              <BASECALL read_group_tag="Langfang" min_match="10" max_mismatch="0" match_edge="full">AACCGGATAC</BASECALL>
              <BASECALL read_group_tag="Linyi" min_match="10" max_mismatch="0" match_edge="full">AACCTTCTTC</BASECALL>
              <BASECALL read_group_tag="Liverpool" min_match="9" max_mismatch="0" match_edge="full">AATACGTTC</BASECALL>
              <BASECALL read_group_tag="Madras" min_match="11" max_mismatch="0" match_edge="full">ACCTTCCGGAC</BASECALL>
              <BASECALL read_group_tag="Mashhad" min_match="10" max_mismatch="0" match_edge="full">TCGTTCCGAC</BASECALL>
              <BASECALL read_group_tag="Mecca" min_match="10" max_mismatch="0" match_edge="full">TTGGCCGGTC</BASECALL>
              <BASECALL read_group_tag="Nagpur" min_match="10" max_mismatch="0" match_edge="full">AACCGACCAC</BASECALL>
              <BASECALL read_group_tag="Naples" min_match="9" max_mismatch="0" match_edge="full">TGGAACCAC</BASECALL>
              <BASECALL read_group_tag="Okara" min_match="10" max_mismatch="0" match_edge="full">TTAATGGAAC</BASECALL>
              <BASECALL read_group_tag="Omsk" min_match="9" max_mismatch="0" match_edge="full">AACCTTATC</BASECALL>
              <BASECALL read_group_tag="Padova" min_match="9" max_mismatch="0" match_edge="full">TTGTTGGAC</BASECALL>
              <BASECALL read_group_tag="Palembang" min_match="9" max_mismatch="0" match_edge="full">TACGGATTC</BASECALL>
              <BASECALL read_group_tag="Perm" min_match="10" max_mismatch="0" match_edge="full">TCCACCGTTC</BASECALL>
              <BASECALL read_group_tag="Praha" min_match="10" max_mismatch="0" match_edge="full">AACGGTGGTC</BASECALL>
              <BASECALL read_group_tag="Rajshahi" min_match="10" max_mismatch="0" match_edge="full">AAGTCGGAAC</BASECALL>
              <BASECALL read_group_tag="Recife" min_match="10" max_mismatch="0" match_edge="full">ACCGGCGTTC</BASECALL>
              <BASECALL read_group_tag="Rotterdam" min_match="10" max_mismatch="0" match_edge="full">CCGTTAATTC</BASECALL>
              <BASECALL read_group_tag="Salvador" min_match="10" max_mismatch="0" match_edge="full">TTACGAATTC</BASECALL>
              <BASECALL read_group_tag="Semarang" min_match="11" max_mismatch="0" match_edge="full">TTAACCGAATC</BASECALL>
              <BASECALL read_group_tag="Shaoxing" min_match="10" max_mismatch="0" match_edge="full">ACCTCCGTTC</BASECALL>
              <BASECALL read_group_tag="Shiraz" min_match="9" max_mismatch="0" match_edge="full">TCGGATTAC</BASECALL>
              <BASECALL read_group_tag="Siping" min_match="10" max_mismatch="0" match_edge="full">TTCGGACCAC</BASECALL>
              <BASECALL read_group_tag="Surat" min_match="10" max_mismatch="0" match_edge="full">TTGTTCGGTC</BASECALL>
              <BASECALL read_group_tag="Tanger" min_match="11" max_mismatch="0" match_edge="full">AACGTTCGTTC</BASECALL>
              <BASECALL read_group_tag="Tangshan" min_match="10" max_mismatch="0" match_edge="full">TTATTCCTTC</BASECALL>
              <BASECALL read_group_tag="Tianjin" min_match="10" max_mismatch="0" match_edge="full">AAGGAACTTC</BASECALL>
              <BASECALL read_group_tag="Tianmen" min_match="10" max_mismatch="0" match_edge="full">AACTTCGGTC</BASECALL>
              <BASECALL read_group_tag="Tonghua" min_match="10" max_mismatch="0" match_edge="full">CGGAACGGAC</BASECALL>
              <BASECALL read_group_tag="Ufa" min_match="10" max_mismatch="0" match_edge="full">AACGCCGGTC</BASECALL>
              <BASECALL read_group_tag="Urumqi" min_match="9" max_mismatch="0" match_edge="full">TTGGCGGAC</BASECALL>
              <BASECALL read_group_tag="Venice" min_match="9" max_mismatch="0" match_edge="full">AAGAACGTC</BASECALL>
              <BASECALL read_group_tag="Xiangtan" min_match="10" max_mismatch="0" match_edge="full">ACGAACCGAC</BASECALL>
              <BASECALL read_group_tag="Yangon" min_match="10" max_mismatch="0" match_edge="full">TTCGGCCTTC</BASECALL>
              <BASECALL read_group_tag="Yokohama" min_match="9" max_mismatch="0" match_edge="full">AGGTCCTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-04-16 01:07:34.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Standard 454 Base Calling</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gene</TAG>
        <VALUE>16S V3-V5 region</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_ids</TAG>
        <VALUE>97753.1 97755.1 97756.1 97757.1 97758.1 97759.1 97760.1 97761.1 97763.1 97764.1 97765.1 97767.1 97768.1 97769.1 97770.1 97771.1 97772.1 97773.1 97774.1 97775.1 97776.1 97777.1 97778.1 97779.1 97780.1 97781.1 97782.1 97783.1 97784.1 97785.1 97786.1 97787.1 97788.1 97789.1 97790.1 97791.1 97792.1 97794.1 97795.1 97798.1 97799.1 97800.1 97801.1 97803.1 97804.1 97805.1 97806.1 97807.1 97808.1 97809.1 97811.1 97813.1 97814.1 97816.1 97818.1 97820.1 97821.1 97823.1 97825.1 97827.1 97828.1 97829.1 97830.1 97831.1 97832.1 97833.1 97837.1 97838.1 97839.1 97840.1 97841.1 97842.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>library_strategy</TAG>
        <VALUE>targeted-locus</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsids</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97753.1 BROAD:SEQUENCING_SAMPLE:97755.1 BROAD:SEQUENCING_SAMPLE:97756.1 BROAD:SEQUENCING_SAMPLE:97757.1 BROAD:SEQUENCING_SAMPLE:97758.1 BROAD:SEQUENCING_SAMPLE:97759.1 BROAD:SEQUENCING_SAMPLE:97760.1 BROAD:SEQUENCING_SAMPLE:97761.1 BROAD:SEQUENCING_SAMPLE:97763.1 BROAD:SEQUENCING_SAMPLE:97764.1 BROAD:SEQUENCING_SAMPLE:97765.1 BROAD:SEQUENCING_SAMPLE:97767.1 BROAD:SEQUENCING_SAMPLE:97768.1 BROAD:SEQUENCING_SAMPLE:97769.1 BROAD:SEQUENCING_SAMPLE:97770.1 BROAD:SEQUENCING_SAMPLE:97771.1 BROAD:SEQUENCING_SAMPLE:97772.1 BROAD:SEQUENCING_SAMPLE:97773.1 BROAD:SEQUENCING_SAMPLE:97774.1 BROAD:SEQUENCING_SAMPLE:97775.1 BROAD:SEQUENCING_SAMPLE:97776.1 BROAD:SEQUENCING_SAMPLE:97777.1 BROAD:SEQUENCING_SAMPLE:97778.1 BROAD:SEQUENCING_SAMPLE:97779.1 BROAD:SEQUENCING_SAMPLE:97780.1 BROAD:SEQUENCING_SAMPLE:97781.1 BROAD:SEQUENCING_SAMPLE:97782.1 BROAD:SEQUENCING_SAMPLE:97783.1 BROAD:SEQUENCING_SAMPLE:97784.1 BROAD:SEQUENCING_SAMPLE:97785.1 BROAD:SEQUENCING_SAMPLE:97786.1 BROAD:SEQUENCING_SAMPLE:97787.1 BROAD:SEQUENCING_SAMPLE:97788.1 BROAD:SEQUENCING_SAMPLE:97789.1 BROAD:SEQUENCING_SAMPLE:97790.1 BROAD:SEQUENCING_SAMPLE:97791.1 BROAD:SEQUENCING_SAMPLE:97792.1 BROAD:SEQUENCING_SAMPLE:97794.1 BROAD:SEQUENCING_SAMPLE:97795.1 BROAD:SEQUENCING_SAMPLE:97798.1 BROAD:SEQUENCING_SAMPLE:97799.1 BROAD:SEQUENCING_SAMPLE:97800.1 BROAD:SEQUENCING_SAMPLE:97801.1 BROAD:SEQUENCING_SAMPLE:97803.1 BROAD:SEQUENCING_SAMPLE:97804.1 BROAD:SEQUENCING_SAMPLE:97805.1 BROAD:SEQUENCING_SAMPLE:97806.1 BROAD:SEQUENCING_SAMPLE:97807.1 BROAD:SEQUENCING_SAMPLE:97808.1 BROAD:SEQUENCING_SAMPLE:97809.1 BROAD:SEQUENCING_SAMPLE:97811.1 BROAD:SEQUENCING_SAMPLE:97813.1 BROAD:SEQUENCING_SAMPLE:97814.1 BROAD:SEQUENCING_SAMPLE:97816.1 BROAD:SEQUENCING_SAMPLE:97818.1 BROAD:SEQUENCING_SAMPLE:97820.1 BROAD:SEQUENCING_SAMPLE:97821.1 BROAD:SEQUENCING_SAMPLE:97823.1 BROAD:SEQUENCING_SAMPLE:97825.1 BROAD:SEQUENCING_SAMPLE:97827.1 BROAD:SEQUENCING_SAMPLE:97828.1 BROAD:SEQUENCING_SAMPLE:97829.1 BROAD:SEQUENCING_SAMPLE:97830.1 BROAD:SEQUENCING_SAMPLE:97831.1 BROAD:SEQUENCING_SAMPLE:97832.1 BROAD:SEQUENCING_SAMPLE:97833.1 BROAD:SEQUENCING_SAMPLE:97837.1 BROAD:SEQUENCING_SAMPLE:97838.1 BROAD:SEQUENCING_SAMPLE:97839.1 BROAD:SEQUENCING_SAMPLE:97840.1 BROAD:SEQUENCING_SAMPLE:97841.1 BROAD:SEQUENCING_SAMPLE:97842.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>projects</TAG>
        <VALUE>G12943 G12945 G12946 G12947 G12948 G12949 G12950 G12951 G12953 G12954 G12955 G12957 G12958 G12959 G12960 G12961 G12962 G12963 G12964 G12965 G12966 G12967 G12968 G12969 G12970 G12971 G12972 G12973 G12974 G12975 G12976 G12977 G12978 G12979 G12980 G12981 G12982 G12984 G12985 G12988 G12989 G12990 G12991 G12993 G12994 G12995 G12996 G12997 G12998 G12999 G13001 G13003 G13004 G13006 G13008 G13010 G13011 G13013 G13015 G13017 G13018 G13019 G13020 G13021 G13022 G13023 G13027 G13028 G13029 G13030 G13031 G13032</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25127</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX089996" center_name="BI" alias="235197.WR25126.0109339520.748741110620.Wellington.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX089996</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">235197.WR25126.0109339520.748741110620.Wellington.S</SUBMITTER_ID>
      <UUID>c478d4ff-849e-49ef-a7ba-844ff1666fba</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of metagenomic library '0109339520' containing sample '10121-ST-21'</TITLE>
    <STUDY_REF accession="SRP001634">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA63661</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Metagenome from Infant Gut Samples">Microbial composition of samples from infant gut human_metagenome_ltp_G9M_WGS_Environment</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS414236">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS414236</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828293</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Broad Institute">10121-ST-21</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109339520</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">ACGAGAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>31</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-06-21 07:36:41.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Standard 454 Base Calling</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gene</TAG>
        <VALUE>16S V3-V5 region</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>97722.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>library_strategy</TAG>
        <VALUE>targeted-locus</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97722.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12912</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX089997" center_name="BI" alias="235197.WR25126.0109339534.748398110415.Pyongyang.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX089997</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">235197.WR25126.0109339534.748398110415.Pyongyang.S</SUBMITTER_ID>
      <UUID>104f661f-6780-4244-a3f0-300d8eca9ba0</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of metagenomic library '0109339534' containing sample '10311-ST-21'</TITLE>
    <STUDY_REF accession="SRP001634">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA63661</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Metagenome from Infant Gut Samples">Microbial composition of samples from infant gut human_metagenome_ltp_G9M_WGS_Environment</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS414237">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS414237</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828334</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Broad Institute">10311-ST-21</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109339534</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TCTCCGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>31</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-04-16 05:58:28.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Standard 454 Base Calling</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gene</TAG>
        <VALUE>16S V3-V5 region</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>97703.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>library_strategy</TAG>
        <VALUE>targeted-locus</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97703.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12893</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX089998" center_name="BI" alias="235197.WR25126.0109339707.748741110620.Guatemala.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX089998</PRIMARY_ID>
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      <UUID>6412cae0-5125-4680-a114-d817252ea8c4</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of metagenomic library '0109339707' containing sample '10472-ST-11'</TITLE>
    <STUDY_REF accession="SRP001634">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA63661</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Metagenome from Infant Gut Samples">Microbial composition of samples from infant gut human_metagenome_ltp_G9M_WGS_Environment</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS414238">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS414238</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828358</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Broad Institute">10472-ST-11</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109339707</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">TGCGTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="12">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>30</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-06-21 07:36:41.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
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        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Standard 454 Base Calling</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gene</TAG>
        <VALUE>16S V3-V5 region</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>library_strategy</TAG>
        <VALUE>targeted-locus</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97688.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12878</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX089999" center_name="BI" alias="235197.WR25126.0109339542.748741110620.Jerusalem.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX089999</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">235197.WR25126.0109339542.748741110620.Jerusalem.S</SUBMITTER_ID>
      <UUID>8e683260-83e9-4862-a0ac-b4689dece7d5</UUID>
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    <TITLE>454 whole genome shotgun sequencing of metagenomic library '0109339542' containing sample '10622-ST-21'</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
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      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS414239</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828263</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Broad Institute">10622-ST-21</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109339542</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
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            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">AACAACTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-06-21 07:36:41.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
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      </PIPELINE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>gene</TAG>
        <VALUE>16S V3-V5 region</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>library_strategy</TAG>
        <VALUE>targeted-locus</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97696.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12886</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX090000" center_name="BI" alias="235197.WR25125.0109340354.747197110413.Hiroshima.S">
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      <PRIMARY_ID>SRX090000</PRIMARY_ID>
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    <TITLE>454 whole genome shotgun sequencing of metagenomic library '0109340354' containing sample '10961-ST-5'</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
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      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS414240</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828425</EXTERNAL_ID>
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        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
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        <LIBRARY_NAME>0109340354</LIBRARY_NAME>
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          <SINGLE/>
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            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="11" base_coord="5">
              <BASECALL min_match="11" max_mismatch="0" match_edge="full">AAGGAACCAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="16">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>gene</TAG>
        <VALUE>16S V3-V5 region</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>97646.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>library_strategy</TAG>
        <VALUE>targeted-locus</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97646.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12836</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25125</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX090001" center_name="BI" alias="235197.WR25125.0109340403.747197110413.Bangalore.S">
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      <PRIMARY_ID>SRX090001</PRIMARY_ID>
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    <TITLE>454 whole genome shotgun sequencing of metagenomic library '0109340403' containing sample '10072-ST-8'</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
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    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of unclassified sequences via polymerase chain reaction</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS372689</PRIMARY_ID>
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            <READ_TYPE>Adapter</READ_TYPE>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="10" base_coord="5">
              <BASECALL min_match="10" max_mismatch="0" match_edge="full">CCGTCGGTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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      <LS454>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>targeted-locus</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97598.1</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25125</VALUE>
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      <PRIMARY_ID>SRX090002</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>454 sequencing of unclassified sequences via polymerase chain reaction</DESIGN_DESCRIPTION>
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        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <SINGLE/>
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      <SPOT_DESCRIPTOR>
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            <READ_TYPE>Adapter</READ_TYPE>
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              <BASECALL match_edge="full" max_mismatch="0" min_match="4">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
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            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
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              <BASECALL match_edge="full" max_mismatch="0" min_match="6">CCTCTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <EXPECTED_BASECALL_TABLE base_coord="11" default_length="18">
              <BASECALL match_edge="full" max_mismatch="14" min_match="4">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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      </SPOT_DESCRIPTOR>
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      <LS454>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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        <TAG>work_request</TAG>
        <VALUE>25128</VALUE>
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    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
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              <BASECALL min_match="9" max_mismatch="0" match_edge="full">AACGCGGAC</BASECALL>
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          <READ_SPEC>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="14">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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      <LS454>
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      <PIPELINE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="9" max_mismatch="0" match_edge="full">ACGTTCCAC</BASECALL>
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            <READ_INDEX>2</READ_INDEX>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="14">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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      <LS454>
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        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="9" max_mismatch="0" match_edge="full">ACCGGAAGC</BASECALL>
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      <EXPERIMENT_ATTRIBUTE>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">TCCGGTCCTC</BASECALL>
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          <READ_SPEC>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109403906</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
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            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="11" base_coord="5">
              <BASECALL min_match="11" max_mismatch="0" match_edge="full">AAGGAACCAAC</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="16">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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        <TAG>work_request</TAG>
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    </EXPERIMENT_ATTRIBUTES>
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              <BASECALL min_match="9" max_mismatch="0" match_edge="full">ACCGGAAGC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="14">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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        </SPOT_DECODE_SPEC>
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      <PIPELINE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">CGGACGGTTC</BASECALL>
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          <READ_SPEC>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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              <BASECALL min_match="9" max_mismatch="0" match_edge="full">AAGACGAAC</BASECALL>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="14">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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      <EXPERIMENT_ATTRIBUTE>
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              <BASECALL min_match="9" max_mismatch="0" match_edge="full">TTAAGATTC</BASECALL>
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              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
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      <LS454>
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      <EXPERIMENT_ATTRIBUTE>
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              <BASECALL min_match="9" max_mismatch="0" match_edge="full">CGGTCCAAC</BASECALL>
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          <READ_SPEC>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="8" max_mismatch="0" match_edge="full">AGGTTGTC</BASECALL>
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              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
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              <BASECALL min_match="9" max_mismatch="0" match_edge="full">CGGTCCAAC</BASECALL>
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          <PRIMARY_ID>SRS414256</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828375</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Broad Institute">10781-ST-8</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109403986</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">TACGGATTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="14">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>32</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
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    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-04-16 01:07:34.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
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      </PIPELINE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>gene</TAG>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97773.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12963</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25127</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX090025</PRIMARY_ID>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
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      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of unclassified sequences via polymerase chain reaction</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS372657</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA218187.10071-ST-8</SUBMITTER_ID>
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      </SAMPLE_DESCRIPTOR>
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        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <SINGLE/>
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      <SPOT_DESCRIPTOR>
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            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="10" base_coord="5">
              <BASECALL min_match="10" max_mismatch="0" match_edge="full">CGGTTCCGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>gene</TAG>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>targeted-locus</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97625.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12815</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25125</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
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  <EXPERIMENT accession="SRX090026" center_name="BI" alias="235197.WR25126.0109339559.748398110415.Copenhagen.S">
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      <PRIMARY_ID>SRX090026</PRIMARY_ID>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
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    </STUDY_REF>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS414254</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828405</EXTERNAL_ID>
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        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
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        <LIBRARY_NAME>0109339559</LIBRARY_NAME>
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          <SINGLE/>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">AACCAGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="12">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-04-16 05:58:28.0</STEP_INDEX>
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          <PROGRAM>454BaseCaller</PROGRAM>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>gene</TAG>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>targeted-locus</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97678.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12868</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
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      <PRIMARY_ID>SRX090027</PRIMARY_ID>
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    <TITLE>454 whole genome shotgun sequencing of metagenomic library '0109403933' containing sample '10671-ST-5'</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
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    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
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            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="10" base_coord="5">
              <BASECALL min_match="10" max_mismatch="0" match_edge="full">CGGTTCCGTC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
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      <LS454>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
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              <BASECALL min_match="6" max_mismatch="0" match_edge="full">CCTCTC</BASECALL>
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          <READ_SPEC>
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            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="11">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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        <TAG>work_request</TAG>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
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              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TGTCGGAC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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        </SPOT_DECODE_SPEC>
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      <PIPELINE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="7" max_mismatch="0" match_edge="full">TGCGTTC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="12">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Genomic DNA</VALUE>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="9" max_mismatch="0" match_edge="full">AATACGTTC</BASECALL>
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              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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      <EXPERIMENT_ATTRIBUTE>
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              <BASECALL min_match="9" max_mismatch="0" match_edge="full">TTAAGATTC</BASECALL>
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              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
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      <EXPERIMENT_ATTRIBUTE>
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            </EXPECTED_BASECALL_TABLE>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">CGGACGGTTC</BASECALL>
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          <READ_SPEC>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
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        </SPOT_DECODE_SPEC>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>25125</VALUE>
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          <EXTERNAL_ID namespace="biosample">SAMN01828293</EXTERNAL_ID>
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              <BASECALL min_match="8" max_mismatch="0" match_edge="full">ACGAGAAC</BASECALL>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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              <BASECALL min_match="8" max_mismatch="0" match_edge="full">AAGAGTTC</BASECALL>
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          <READ_SPEC>
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          <READ_SPEC>
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          <MEMBER member_name="Turin_TCGGAACGAAC" proportion="0.01234568" accession="SRS414182">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414182</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828304</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10701-ST-21</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Turin">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Ufa_AACGCCGGTC" proportion="0.01234568" accession="SRS372682">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS372682</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">PRJNA218187.10092-ST-5</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Ufa">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Venice_AAGAACGTC" proportion="0.01234568" accession="SRS414198">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414198</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828280</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10141-ST-21</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Venice">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Wuhan_ATTGTTAAC" proportion="0.01234568" accession="SRS414125">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414125</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828431</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10161-ST-8</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Wuhan">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Xiangtan_ACGAACCGAC" proportion="0.01234568" accession="SRS372538">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS372538</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">PRJNA218187.10261-ST-14</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Xiangtan">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Yangon_TTCGGCCTTC" proportion="0.01234568" accession="SRS387620">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS387620</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">PRJNA218187.10231-ST-21</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Yangon">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Yokohama_AGGTCCTTC" proportion="0.01234568" accession="SRS414213">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414213</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828347</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10141-ST-14</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Yokohama">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Yueyang_TCGGTTCAAC" proportion="0.01234568" accession="SRS414279">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414279</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828268</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10741-ST-11</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Yueyang">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Zibo_TTCCGGTTCTC" proportion="0.01234568" accession="SRS414174">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414174</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828360</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10881-ST-8</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Zibo">barcode</READ_LABEL>
          </MEMBER>
        </POOL>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0101931633</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE base_coord="5">
              <BASECALL read_group_tag="Abidjan" min_match="10" max_mismatch="0" match_edge="full">TAACCGGATC</BASECALL>
              <BASECALL read_group_tag="Adana" min_match="9" max_mismatch="0" match_edge="full">CCGAACGAC</BASECALL>
              <BASECALL read_group_tag="Aleppo" min_match="10" max_mismatch="0" match_edge="full">TCCGAACAAC</BASECALL>
              <BASECALL read_group_tag="Alger" min_match="9" max_mismatch="0" match_edge="full">AACTTGGAC</BASECALL>
              <BASECALL read_group_tag="Almaty" min_match="10" max_mismatch="0" match_edge="full">ATTAACGGAC</BASECALL>
              <BASECALL read_group_tag="Bangalore" min_match="10" max_mismatch="0" match_edge="full">CCGTCGGTTC</BASECALL>
              <BASECALL read_group_tag="Belem" min_match="9" max_mismatch="0" match_edge="full">TGGACCTTC</BASECALL>
              <BASECALL read_group_tag="Belfast" min_match="10" max_mismatch="0" match_edge="full">TTCACGGAAC</BASECALL>
              <BASECALL read_group_tag="Beograd" min_match="10" max_mismatch="0" match_edge="full">AGGTTCCGAC</BASECALL>
              <BASECALL read_group_tag="Bhopal" min_match="10" max_mismatch="0" match_edge="full">AATACCGAAC</BASECALL>
              <BASECALL read_group_tag="Bucuresti" min_match="10" max_mismatch="0" match_edge="full">CGGTTCCGTC</BASECALL>
              <BASECALL read_group_tag="Calcutta" min_match="11" max_mismatch="0" match_edge="full">CGGACCGGAAC</BASECALL>
              <BASECALL read_group_tag="Calgary" min_match="9" max_mismatch="0" match_edge="full">TCCGGTCAC</BASECALL>
              <BASECALL read_group_tag="Changchun" min_match="9" max_mismatch="0" match_edge="full">CGGTCCAAC</BASECALL>
              <BASECALL read_group_tag="Chengdu" min_match="9" max_mismatch="0" match_edge="full">TCGGACCGC</BASECALL>
              <BASECALL read_group_tag="Chiniot" min_match="10" max_mismatch="0" match_edge="full">AATAACCGTC</BASECALL>
              <BASECALL read_group_tag="Cologne" min_match="9" max_mismatch="0" match_edge="full">TTCAAGGAC</BASECALL>
              <BASECALL read_group_tag="Delhi" min_match="10" max_mismatch="0" match_edge="full">AATTCCTAAC</BASECALL>
              <BASECALL read_group_tag="Donetsk" min_match="10" max_mismatch="0" match_edge="full">ACGACCGTTC</BASECALL>
              <BASECALL read_group_tag="Edinburgh" min_match="10" max_mismatch="0" match_edge="full">TTCCGAGGTC</BASECALL>
              <BASECALL read_group_tag="Esfahan" min_match="10" max_mismatch="0" match_edge="full">TCCAATTAAC</BASECALL>
              <BASECALL read_group_tag="Fengcheng" min_match="10" max_mismatch="0" match_edge="full">CCGAACCGTC</BASECALL>
              <BASECALL read_group_tag="Fulin" min_match="10" max_mismatch="0" match_edge="full">ACCGTTGTTC</BASECALL>
              <BASECALL read_group_tag="Fushun" min_match="10" max_mismatch="0" match_edge="full">TCGGAAGTTC</BASECALL>
              <BASECALL read_group_tag="Giza" min_match="10" max_mismatch="0" match_edge="full">TCCGGAAGGC</BASECALL>
              <BASECALL read_group_tag="Guadalajara" min_match="10" max_mismatch="0" match_edge="full">CGGACGGTTC</BASECALL>
              <BASECALL read_group_tag="Guayaquil" min_match="10" max_mismatch="0" match_edge="full">AACGGAACGC</BASECALL>
              <BASECALL read_group_tag="Harbin" min_match="11" max_mismatch="0" match_edge="full">TCGAACCGGAC</BASECALL>
              <BASECALL read_group_tag="Hefei" min_match="10" max_mismatch="0" match_edge="full">AACCGCCTTC</BASECALL>
              <BASECALL read_group_tag="Hengyang" min_match="10" max_mismatch="0" match_edge="full">TTAATTCCAC</BASECALL>
              <BASECALL read_group_tag="Heze" min_match="10" max_mismatch="0" match_edge="full">CCGACCGAAC</BASECALL>
              <BASECALL read_group_tag="Hiroshima" min_match="11" max_mismatch="0" match_edge="full">AAGGAACCAAC</BASECALL>
              <BASECALL read_group_tag="Huzhou" min_match="10" max_mismatch="0" match_edge="full">TGGTCCGTTC</BASECALL>
              <BASECALL read_group_tag="Istanbul" min_match="10" max_mismatch="0" match_edge="full">TCCAACCGAC</BASECALL>
              <BASECALL read_group_tag="Izmir" min_match="10" max_mismatch="0" match_edge="full">TTCCGTCCAC</BASECALL>
              <BASECALL read_group_tag="Jilin" min_match="10" max_mismatch="0" match_edge="full">TCGGTCCGGC</BASECALL>
              <BASECALL read_group_tag="Kawasaki" min_match="10" max_mismatch="0" match_edge="full">ACCGGACGAC</BASECALL>
              <BASECALL read_group_tag="Kitakyushu" min_match="10" max_mismatch="0" match_edge="full">TCCGGTCCTC</BASECALL>
              <BASECALL read_group_tag="Kobe" min_match="10" max_mismatch="0" match_edge="full">TTCAACGGTC</BASECALL>
              <BASECALL read_group_tag="Kunming" min_match="9" max_mismatch="0" match_edge="full">TTCTTCGTC</BASECALL>
              <BASECALL read_group_tag="Kwangchu" min_match="10" max_mismatch="0" match_edge="full">TTCCGGCCGC</BASECALL>
              <BASECALL read_group_tag="Lagos" min_match="10" max_mismatch="0" match_edge="full">ACGGAACAAC</BASECALL>
              <BASECALL read_group_tag="Langfang" min_match="10" max_mismatch="0" match_edge="full">AACCGGATAC</BASECALL>
              <BASECALL read_group_tag="Linyi" min_match="10" max_mismatch="0" match_edge="full">AACCTTCTTC</BASECALL>
              <BASECALL read_group_tag="Liverpool" min_match="9" max_mismatch="0" match_edge="full">AATACGTTC</BASECALL>
              <BASECALL read_group_tag="Luoyang" min_match="10" max_mismatch="0" match_edge="full">ACGAATTAAC</BASECALL>
              <BASECALL read_group_tag="Madras" min_match="11" max_mismatch="0" match_edge="full">ACCTTCCGGAC</BASECALL>
              <BASECALL read_group_tag="Marseille" min_match="9" max_mismatch="0" match_edge="full">AAGACGAAC</BASECALL>
              <BASECALL read_group_tag="Mashhad" min_match="10" max_mismatch="0" match_edge="full">TCGTTCCGAC</BASECALL>
              <BASECALL read_group_tag="Mecca" min_match="10" max_mismatch="0" match_edge="full">TTGGCCGGTC</BASECALL>
              <BASECALL read_group_tag="Montreal" min_match="11" max_mismatch="0" match_edge="full">ACCGGACCGTC</BASECALL>
              <BASECALL read_group_tag="Naples" min_match="9" max_mismatch="0" match_edge="full">TGGAACCAC</BASECALL>
              <BASECALL read_group_tag="Okara" min_match="10" max_mismatch="0" match_edge="full">TTAATGGAAC</BASECALL>
              <BASECALL read_group_tag="Osaka" min_match="10" max_mismatch="0" match_edge="full">TTCGTTCTTC</BASECALL>
              <BASECALL read_group_tag="Padova" min_match="9" max_mismatch="0" match_edge="full">TTGTTGGAC</BASECALL>
              <BASECALL read_group_tag="Palembang" min_match="9" max_mismatch="0" match_edge="full">TACGGATTC</BASECALL>
              <BASECALL read_group_tag="Praha" min_match="10" max_mismatch="0" match_edge="full">AACGGTGGTC</BASECALL>
              <BASECALL read_group_tag="Pune" min_match="10" max_mismatch="0" match_edge="full">TTCCGTTCGC</BASECALL>
              <BASECALL read_group_tag="Rajshahi" min_match="10" max_mismatch="0" match_edge="full">AAGTCGGAAC</BASECALL>
              <BASECALL read_group_tag="Recife" min_match="10" max_mismatch="0" match_edge="full">ACCGGCGTTC</BASECALL>
              <BASECALL read_group_tag="Saidpur" min_match="10" max_mismatch="0" match_edge="full">ATTACGGTTC</BASECALL>
              <BASECALL read_group_tag="Salvador" min_match="10" max_mismatch="0" match_edge="full">TTACGAATTC</BASECALL>
              <BASECALL read_group_tag="Semarang" min_match="11" max_mismatch="0" match_edge="full">TTAACCGAATC</BASECALL>
              <BASECALL read_group_tag="Shaoxing" min_match="10" max_mismatch="0" match_edge="full">ACCTCCGTTC</BASECALL>
              <BASECALL read_group_tag="Shiraz" min_match="9" max_mismatch="0" match_edge="full">TCGGATTAC</BASECALL>
              <BASECALL read_group_tag="Siping" min_match="10" max_mismatch="0" match_edge="full">TTCGGACCAC</BASECALL>
              <BASECALL read_group_tag="Surabaya" min_match="10" max_mismatch="0" match_edge="full">TTCCAACTTC</BASECALL>
              <BASECALL read_group_tag="Surat" min_match="10" max_mismatch="0" match_edge="full">TTGTTCGGTC</BASECALL>
              <BASECALL read_group_tag="Tanger" min_match="11" max_mismatch="0" match_edge="full">AACGTTCGTTC</BASECALL>
              <BASECALL read_group_tag="Tangshan" min_match="10" max_mismatch="0" match_edge="full">TTATTCCTTC</BASECALL>
              <BASECALL read_group_tag="Tianjin" min_match="10" max_mismatch="0" match_edge="full">AAGGAACTTC</BASECALL>
              <BASECALL read_group_tag="Tianmen" min_match="10" max_mismatch="0" match_edge="full">AACTTCGGTC</BASECALL>
              <BASECALL read_group_tag="Turin" min_match="11" max_mismatch="0" match_edge="full">TCGGAACGAAC</BASECALL>
              <BASECALL read_group_tag="Ufa" min_match="10" max_mismatch="0" match_edge="full">AACGCCGGTC</BASECALL>
              <BASECALL read_group_tag="Venice" min_match="9" max_mismatch="0" match_edge="full">AAGAACGTC</BASECALL>
              <BASECALL read_group_tag="Wuhan" min_match="9" max_mismatch="0" match_edge="full">ATTGTTAAC</BASECALL>
              <BASECALL read_group_tag="Xiangtan" min_match="10" max_mismatch="0" match_edge="full">ACGAACCGAC</BASECALL>
              <BASECALL read_group_tag="Yangon" min_match="10" max_mismatch="0" match_edge="full">TTCGGCCTTC</BASECALL>
              <BASECALL read_group_tag="Yokohama" min_match="9" max_mismatch="0" match_edge="full">AGGTCCTTC</BASECALL>
              <BASECALL read_group_tag="Yueyang" min_match="10" max_mismatch="0" match_edge="full">TCGGTTCAAC</BASECALL>
              <BASECALL read_group_tag="Zibo" min_match="11" max_mismatch="0" match_edge="full">TTCCGGTTCTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-04-16 01:07:35.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Standard 454 Base Calling</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gene</TAG>
        <VALUE>16S V3-V5 region</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_ids</TAG>
        <VALUE>97559.1 97560.1 97561.1 97562.1 97563.1 97564.1 97567.1 97570.1 97571.1 97573.1 97574.1 97577.1 97578.1 97579.1 97580.1 97581.1 97583.1 97584.1 97585.1 97586.1 97587.1 97588.1 97589.1 97590.1 97591.1 97592.1 97594.1 97595.1 97597.1 97598.1 97599.1 97600.1 97601.1 97602.1 97603.1 97604.1 97605.1 97606.1 97608.1 97609.1 97610.1 97611.1 97612.1 97613.1 97614.1 97616.1 97617.1 97618.1 97619.1 97620.1 97621.1 97623.1 97624.1 97625.1 97626.1 97627.1 97628.1 97629.1 97631.1 97632.1 97633.1 97634.1 97635.1 97636.1 97638.1 97639.1 97640.1 97641.1 97642.1 97643.1 97644.1 97645.1 97646.1 97647.1 97648.1 97649.1 97650.1 97651.1 97652.1 97653.1 97654.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>library_strategy</TAG>
        <VALUE>targeted-locus</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsids</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97559.1 BROAD:SEQUENCING_SAMPLE:97560.1 BROAD:SEQUENCING_SAMPLE:97561.1 BROAD:SEQUENCING_SAMPLE:97562.1 BROAD:SEQUENCING_SAMPLE:97563.1 BROAD:SEQUENCING_SAMPLE:97564.1 BROAD:SEQUENCING_SAMPLE:97567.1 BROAD:SEQUENCING_SAMPLE:97570.1 BROAD:SEQUENCING_SAMPLE:97571.1 BROAD:SEQUENCING_SAMPLE:97573.1 BROAD:SEQUENCING_SAMPLE:97574.1 BROAD:SEQUENCING_SAMPLE:97577.1 BROAD:SEQUENCING_SAMPLE:97578.1 BROAD:SEQUENCING_SAMPLE:97579.1 BROAD:SEQUENCING_SAMPLE:97580.1 BROAD:SEQUENCING_SAMPLE:97581.1 BROAD:SEQUENCING_SAMPLE:97583.1 BROAD:SEQUENCING_SAMPLE:97584.1 BROAD:SEQUENCING_SAMPLE:97585.1 BROAD:SEQUENCING_SAMPLE:97586.1 BROAD:SEQUENCING_SAMPLE:97587.1 BROAD:SEQUENCING_SAMPLE:97588.1 BROAD:SEQUENCING_SAMPLE:97589.1 BROAD:SEQUENCING_SAMPLE:97590.1 BROAD:SEQUENCING_SAMPLE:97591.1 BROAD:SEQUENCING_SAMPLE:97592.1 BROAD:SEQUENCING_SAMPLE:97594.1 BROAD:SEQUENCING_SAMPLE:97595.1 BROAD:SEQUENCING_SAMPLE:97597.1 BROAD:SEQUENCING_SAMPLE:97598.1 BROAD:SEQUENCING_SAMPLE:97599.1 BROAD:SEQUENCING_SAMPLE:97600.1 BROAD:SEQUENCING_SAMPLE:97601.1 BROAD:SEQUENCING_SAMPLE:97602.1 BROAD:SEQUENCING_SAMPLE:97603.1 BROAD:SEQUENCING_SAMPLE:97604.1 BROAD:SEQUENCING_SAMPLE:97605.1 BROAD:SEQUENCING_SAMPLE:97606.1 BROAD:SEQUENCING_SAMPLE:97608.1 BROAD:SEQUENCING_SAMPLE:97609.1 BROAD:SEQUENCING_SAMPLE:97610.1 BROAD:SEQUENCING_SAMPLE:97611.1 BROAD:SEQUENCING_SAMPLE:97612.1 BROAD:SEQUENCING_SAMPLE:97613.1 BROAD:SEQUENCING_SAMPLE:97614.1 BROAD:SEQUENCING_SAMPLE:97616.1 BROAD:SEQUENCING_SAMPLE:97617.1 BROAD:SEQUENCING_SAMPLE:97618.1 BROAD:SEQUENCING_SAMPLE:97619.1 BROAD:SEQUENCING_SAMPLE:97620.1 BROAD:SEQUENCING_SAMPLE:97621.1 BROAD:SEQUENCING_SAMPLE:97623.1 BROAD:SEQUENCING_SAMPLE:97624.1 BROAD:SEQUENCING_SAMPLE:97625.1 BROAD:SEQUENCING_SAMPLE:97626.1 BROAD:SEQUENCING_SAMPLE:97627.1 BROAD:SEQUENCING_SAMPLE:97628.1 BROAD:SEQUENCING_SAMPLE:97629.1 BROAD:SEQUENCING_SAMPLE:97631.1 BROAD:SEQUENCING_SAMPLE:97632.1 BROAD:SEQUENCING_SAMPLE:97633.1 BROAD:SEQUENCING_SAMPLE:97634.1 BROAD:SEQUENCING_SAMPLE:97635.1 BROAD:SEQUENCING_SAMPLE:97636.1 BROAD:SEQUENCING_SAMPLE:97638.1 BROAD:SEQUENCING_SAMPLE:97639.1 BROAD:SEQUENCING_SAMPLE:97640.1 BROAD:SEQUENCING_SAMPLE:97641.1 BROAD:SEQUENCING_SAMPLE:97642.1 BROAD:SEQUENCING_SAMPLE:97643.1 BROAD:SEQUENCING_SAMPLE:97644.1 BROAD:SEQUENCING_SAMPLE:97645.1 BROAD:SEQUENCING_SAMPLE:97646.1 BROAD:SEQUENCING_SAMPLE:97647.1 BROAD:SEQUENCING_SAMPLE:97648.1 BROAD:SEQUENCING_SAMPLE:97649.1 BROAD:SEQUENCING_SAMPLE:97650.1 BROAD:SEQUENCING_SAMPLE:97651.1 BROAD:SEQUENCING_SAMPLE:97652.1 BROAD:SEQUENCING_SAMPLE:97653.1 BROAD:SEQUENCING_SAMPLE:97654.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
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          <MEMBER member_name="Kingston_TGCCGAAC" proportion="0.01449275" accession="SRS414221">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414221</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828413</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10451-ST-21</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Kingston">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Kinshasa_TGACGAC" proportion="0.01449275" accession="SRS414211">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414211</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828395</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10921-ST-11</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Kinshasa">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Kishinev_CGGTCTTC" proportion="0.01449275" accession="SRS414214">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414214</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828384</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10521-ST-11</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Kishinev">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Lima_AAGAAGAC" proportion="0.01449275" accession="SRS414114">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414114</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828362</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10341-ST-21</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Lima">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Lisbon_CTTCCTTC" proportion="0.01449275" accession="SRS414154">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414154</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828388</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10351-ST-14</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Lisbon">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Luxembourg_AAGAGTTC" proportion="0.01449275" accession="SRS414261">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414261</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828392</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10542-ST-21</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Luxembourg">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Madrid_TTCGTTATC" proportion="0.01449275" accession="SRS414166">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414166</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828337</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10191-ST-11</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Madrid">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Maseru_TTCTTGAC" proportion="0.01449275" accession="SRS414197">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414197</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828325</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10501-ST-21</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Maseru">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Minsk_ACTCAC" proportion="0.01449275" accession="SRS414133">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414133</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828332</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10881-ST-11</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Minsk">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Mogadishu_ACGTTCCAC" proportion="0.01449275" accession="SRS414242">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414242</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828336</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10491-ST-14</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Mogadishu">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Monaco_AAGGCCTC" proportion="0.01449275" accession="SRS414155">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414155</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828278</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10541-ST-21</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Monaco">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Monrovia_TCCAAGTC" proportion="0.01449275" accession="SRS414212">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414212</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828341</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10501-ST-14</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Monrovia">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Moscow_CCTTCCGC" proportion="0.01449275" accession="SRS414152">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414152</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828276</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10351-ST-21</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Moscow">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Muscat_CCACGGTC" proportion="0.01449275" accession="SRS414168">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414168</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828312</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10581-ST-14</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Muscat">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Nairobi_CCGGCCAC" proportion="0.01449275" accession="SRS414275">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414275</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828402</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10541-ST-11</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Nairobi">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Nassau_ACGCGC" proportion="0.01449275" accession="SRS414194">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414194</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828333</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10882-ST-11</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Nassau">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Nicosia_TCGCGGC" proportion="0.01449275" accession="SRS414268">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414268</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828262</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10961-ST-11</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Nicosia">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Osaka_TTCGTTCTTC" proportion="0.01449275" accession="SRS372616">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS372616</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">PRJNA218187.10291-ST-5</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Osaka">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Ottawa_CAAGAAC" proportion="0.01449275" accession="SRS414165">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414165</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828435</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10882-ST-5</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Ottawa">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Paris_TCCGCTC" proportion="0.01449275" accession="SRS414127">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414127</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828349</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10471-ST-11</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Paris">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Prague_ATCTTAC" proportion="0.01449275" accession="SRS414158">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414158</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828314</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10901-ST-11</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Prague">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Quito_AAGGTGC" proportion="0.01449275" accession="SRS414179">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414179</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828303</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10381-ST-14</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Quito">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Rabat_ACTAATTC" proportion="0.01449275" accession="SRS414135">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414135</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828279</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10542-ST-14</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Rabat">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Rome_ACACGGAC" proportion="0.01449275" accession="SRS414120">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414120</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828299</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10581-ST-21</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Rome">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Santiago_TATCAAC" proportion="0.01449275" accession="SRS414222">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414222</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828296</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10911-ST-14</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Santiago">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Seoul_AACCTGGC" proportion="0.01449275" accession="SRS414130">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414130</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828399</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10301-ST-21</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Seoul">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Sofia_AAGCCGC" proportion="0.01449275" accession="SRS414138">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414138</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828385</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10891-ST-8</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Sofia">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Suva_TAATCTC" proportion="0.01449275" accession="SRS414123">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414123</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828266</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10461-ST-14</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Suva">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Tarawa_AATGGTAC" proportion="0.01449275" accession="SRS414151">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414151</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828338</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10121-ST-8</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Tarawa">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Tokyo_TATTCGTC" proportion="0.01449275" accession="SRS371397">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS371397</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">PRJNA218187.10541-ST-8</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Tokyo">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Valletta_TCCAGAAC" proportion="0.01449275" accession="SRS414225">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414225</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828391</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10542-ST-8</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Valletta">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Warsaw_TTCTCAAC" proportion="0.01449275" accession="SRS414190">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414190</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828382</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10472-ST-8</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Warsaw">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Wellington_ACGAGAAC" proportion="0.01449275" accession="SRS414236">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414236</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828293</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10121-ST-21</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Wellington">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Zagreb_AGACCTC" proportion="0.01449275" accession="SRS414170">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414170</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828283</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10882-ST-14</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Zagreb">barcode</READ_LABEL>
          </MEMBER>
        </POOL>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-7178</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE base_coord="5">
              <BASECALL read_group_tag="Abuja" min_match="8" max_mismatch="0" match_edge="full">TCGTTGTC</BASECALL>
              <BASECALL read_group_tag="Accra" min_match="7" max_mismatch="0" match_edge="full">AGTCGAC</BASECALL>
              <BASECALL read_group_tag="Algiers" min_match="6" max_mismatch="0" match_edge="full">TGAAGC</BASECALL>
              <BASECALL read_group_tag="Amman" min_match="8" max_mismatch="0" match_edge="full">TAGGAATC</BASECALL>
              <BASECALL read_group_tag="Asuncion" min_match="8" max_mismatch="0" match_edge="full">TTATCGGC</BASECALL>
              <BASECALL read_group_tag="Athens" min_match="7" max_mismatch="0" match_edge="full">ACGGCTC</BASECALL>
              <BASECALL read_group_tag="Baku" min_match="6" max_mismatch="0" match_edge="full">CGTGAC</BASECALL>
              <BASECALL read_group_tag="Bamako" min_match="8" max_mismatch="0" match_edge="full">TTGACAAC</BASECALL>
              <BASECALL read_group_tag="Beijing" min_match="7" max_mismatch="0" match_edge="full">AGGCGGC</BASECALL>
              <BASECALL read_group_tag="Beirut" min_match="8" max_mismatch="0" match_edge="full">AACACAAC</BASECALL>
              <BASECALL read_group_tag="Belem" min_match="9" max_mismatch="0" match_edge="full">TGGACCTTC</BASECALL>
              <BASECALL read_group_tag="Berlin" min_match="7" max_mismatch="0" match_edge="full">TATTGAC</BASECALL>
              <BASECALL read_group_tag="Bern" min_match="9" max_mismatch="0" match_edge="full">TGGTTGGTC</BASECALL>
              <BASECALL read_group_tag="Bhopal" min_match="10" max_mismatch="0" match_edge="full">AATACCGAAC</BASECALL>
              <BASECALL read_group_tag="Bishkek" min_match="8" max_mismatch="0" match_edge="full">ACGAAGTC</BASECALL>
              <BASECALL read_group_tag="Bissau" min_match="7" max_mismatch="0" match_edge="full">CCAGGAC</BASECALL>
              <BASECALL read_group_tag="Bogota" min_match="7" max_mismatch="0" match_edge="full">CGGTATC</BASECALL>
              <BASECALL read_group_tag="Bratislava" min_match="9" max_mismatch="0" match_edge="full">ACCGGAAGC</BASECALL>
              <BASECALL read_group_tag="Brazzaville" min_match="7" max_mismatch="0" match_edge="full">ACAAGGC</BASECALL>
              <BASECALL read_group_tag="Budapest" min_match="7" max_mismatch="0" match_edge="full">ACTCCTC</BASECALL>
              <BASECALL read_group_tag="Cairo" min_match="7" max_mismatch="0" match_edge="full">TCTTGGC</BASECALL>
              <BASECALL read_group_tag="Canberra" min_match="6" max_mismatch="0" match_edge="full">ACTTGC</BASECALL>
              <BASECALL read_group_tag="Conakry" min_match="7" max_mismatch="0" match_edge="full">TCTCGAC</BASECALL>
              <BASECALL read_group_tag="Copenhagen" min_match="7" max_mismatch="0" match_edge="full">AACCAGC</BASECALL>
              <BASECALL read_group_tag="Dakar" min_match="8" max_mismatch="0" match_edge="full">AACGAGGC</BASECALL>
              <BASECALL read_group_tag="Djibouti" min_match="7" max_mismatch="0" match_edge="full">TTCGAGC</BASECALL>
              <BASECALL read_group_tag="Doha" min_match="8" max_mismatch="0" match_edge="full">ATTCGTAC</BASECALL>
              <BASECALL read_group_tag="Dublin" min_match="7" max_mismatch="0" match_edge="full">AAGGCAC</BASECALL>
              <BASECALL read_group_tag="Guatemala" min_match="7" max_mismatch="0" match_edge="full">TGCGTTC</BASECALL>
              <BASECALL read_group_tag="Havana" min_match="7" max_mismatch="0" match_edge="full">ATACCAC</BASECALL>
              <BASECALL read_group_tag="Jakarta" min_match="7" max_mismatch="0" match_edge="full">TTCCTGC</BASECALL>
              <BASECALL read_group_tag="Jerusalem" min_match="8" max_mismatch="0" match_edge="full">AACAACTC</BASECALL>
              <BASECALL read_group_tag="Kathmandu" min_match="8" max_mismatch="0" match_edge="full">TGTCGGAC</BASECALL>
              <BASECALL read_group_tag="Khartoum" min_match="9" max_mismatch="0" match_edge="full">ACCTTGGTC</BASECALL>
              <BASECALL read_group_tag="Kigali" min_match="8" max_mismatch="0" match_edge="full">AGTCCGTC</BASECALL>
              <BASECALL read_group_tag="Kingston" min_match="8" max_mismatch="0" match_edge="full">TGCCGAAC</BASECALL>
              <BASECALL read_group_tag="Kinshasa" min_match="7" max_mismatch="0" match_edge="full">TGACGAC</BASECALL>
              <BASECALL read_group_tag="Kishinev" min_match="8" max_mismatch="0" match_edge="full">CGGTCTTC</BASECALL>
              <BASECALL read_group_tag="Lima" min_match="8" max_mismatch="0" match_edge="full">AAGAAGAC</BASECALL>
              <BASECALL read_group_tag="Lisbon" min_match="8" max_mismatch="0" match_edge="full">CTTCCTTC</BASECALL>
              <BASECALL read_group_tag="Luxembourg" min_match="8" max_mismatch="0" match_edge="full">AAGAGTTC</BASECALL>
              <BASECALL read_group_tag="Madrid" min_match="9" max_mismatch="0" match_edge="full">TTCGTTATC</BASECALL>
              <BASECALL read_group_tag="Maseru" min_match="8" max_mismatch="0" match_edge="full">TTCTTGAC</BASECALL>
              <BASECALL read_group_tag="Minsk" min_match="6" max_mismatch="0" match_edge="full">ACTCAC</BASECALL>
              <BASECALL read_group_tag="Mogadishu" min_match="9" max_mismatch="0" match_edge="full">ACGTTCCAC</BASECALL>
              <BASECALL read_group_tag="Monaco" min_match="8" max_mismatch="0" match_edge="full">AAGGCCTC</BASECALL>
              <BASECALL read_group_tag="Monrovia" min_match="8" max_mismatch="0" match_edge="full">TCCAAGTC</BASECALL>
              <BASECALL read_group_tag="Moscow" min_match="8" max_mismatch="0" match_edge="full">CCTTCCGC</BASECALL>
              <BASECALL read_group_tag="Muscat" min_match="8" max_mismatch="0" match_edge="full">CCACGGTC</BASECALL>
              <BASECALL read_group_tag="Nairobi" min_match="8" max_mismatch="0" match_edge="full">CCGGCCAC</BASECALL>
              <BASECALL read_group_tag="Nassau" min_match="6" max_mismatch="0" match_edge="full">ACGCGC</BASECALL>
              <BASECALL read_group_tag="Nicosia" min_match="7" max_mismatch="0" match_edge="full">TCGCGGC</BASECALL>
              <BASECALL read_group_tag="Osaka" min_match="10" max_mismatch="0" match_edge="full">TTCGTTCTTC</BASECALL>
              <BASECALL read_group_tag="Ottawa" min_match="7" max_mismatch="0" match_edge="full">CAAGAAC</BASECALL>
              <BASECALL read_group_tag="Paris" min_match="7" max_mismatch="0" match_edge="full">TCCGCTC</BASECALL>
              <BASECALL read_group_tag="Prague" min_match="7" max_mismatch="0" match_edge="full">ATCTTAC</BASECALL>
              <BASECALL read_group_tag="Quito" min_match="7" max_mismatch="0" match_edge="full">AAGGTGC</BASECALL>
              <BASECALL read_group_tag="Rabat" min_match="8" max_mismatch="0" match_edge="full">ACTAATTC</BASECALL>
              <BASECALL read_group_tag="Rome" min_match="8" max_mismatch="0" match_edge="full">ACACGGAC</BASECALL>
              <BASECALL read_group_tag="Santiago" min_match="7" max_mismatch="0" match_edge="full">TATCAAC</BASECALL>
              <BASECALL read_group_tag="Seoul" min_match="8" max_mismatch="0" match_edge="full">AACCTGGC</BASECALL>
              <BASECALL read_group_tag="Sofia" min_match="7" max_mismatch="0" match_edge="full">AAGCCGC</BASECALL>
              <BASECALL read_group_tag="Suva" min_match="7" max_mismatch="0" match_edge="full">TAATCTC</BASECALL>
              <BASECALL read_group_tag="Tarawa" min_match="8" max_mismatch="0" match_edge="full">AATGGTAC</BASECALL>
              <BASECALL read_group_tag="Tokyo" min_match="8" max_mismatch="0" match_edge="full">TATTCGTC</BASECALL>
              <BASECALL read_group_tag="Valletta" min_match="8" max_mismatch="0" match_edge="full">TCCAGAAC</BASECALL>
              <BASECALL read_group_tag="Warsaw" min_match="8" max_mismatch="0" match_edge="full">TTCTCAAC</BASECALL>
              <BASECALL read_group_tag="Wellington" min_match="8" max_mismatch="0" match_edge="full">ACGAGAAC</BASECALL>
              <BASECALL read_group_tag="Zagreb" min_match="7" max_mismatch="0" match_edge="full">AGACCTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-06-21 07:36:41.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Standard 454 Base Calling</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gene</TAG>
        <VALUE>16S V3-V5 region</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_ids</TAG>
        <VALUE>97566.1 97605.1 97656.1 97657.1 97660.1 97662.1 97666.1 97667.1 97669.1 97670.1 97671.1 97672.1 97673.1 97674.1 97675.1 97676.1 97677.1 97678.1 97679.1 97680.1 97681.1 97682.1 97684.1 97685.1 97686.1 97687.1 97688.1 97689.1 97690.1 97691.1 97692.1 97695.1 97696.1 97697.1 97698.1 97699.1 97700.1 97701.1 97702.1 97704.1 97705.1 97707.1 97708.1 97709.1 97713.1 97714.1 97715.1 97716.1 97717.1 97718.1 97720.1 97722.1 97725.1 97727.1 97729.1 97731.1 97733.1 97734.1 97735.1 97736.1 97737.1 97739.1 97742.1 97744.1 97746.1 97748.1 97750.1 97761.1 97792.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>library_strategy</TAG>
        <VALUE>targeted-locus</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsids</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97566.1 BROAD:SEQUENCING_SAMPLE:97605.1 BROAD:SEQUENCING_SAMPLE:97656.1 BROAD:SEQUENCING_SAMPLE:97657.1 BROAD:SEQUENCING_SAMPLE:97660.1 BROAD:SEQUENCING_SAMPLE:97662.1 BROAD:SEQUENCING_SAMPLE:97666.1 BROAD:SEQUENCING_SAMPLE:97667.1 BROAD:SEQUENCING_SAMPLE:97669.1 BROAD:SEQUENCING_SAMPLE:97670.1 BROAD:SEQUENCING_SAMPLE:97671.1 BROAD:SEQUENCING_SAMPLE:97672.1 BROAD:SEQUENCING_SAMPLE:97673.1 BROAD:SEQUENCING_SAMPLE:97674.1 BROAD:SEQUENCING_SAMPLE:97675.1 BROAD:SEQUENCING_SAMPLE:97676.1 BROAD:SEQUENCING_SAMPLE:97677.1 BROAD:SEQUENCING_SAMPLE:97678.1 BROAD:SEQUENCING_SAMPLE:97679.1 BROAD:SEQUENCING_SAMPLE:97680.1 BROAD:SEQUENCING_SAMPLE:97681.1 BROAD:SEQUENCING_SAMPLE:97682.1 BROAD:SEQUENCING_SAMPLE:97684.1 BROAD:SEQUENCING_SAMPLE:97685.1 BROAD:SEQUENCING_SAMPLE:97686.1 BROAD:SEQUENCING_SAMPLE:97687.1 BROAD:SEQUENCING_SAMPLE:97688.1 BROAD:SEQUENCING_SAMPLE:97689.1 BROAD:SEQUENCING_SAMPLE:97690.1 BROAD:SEQUENCING_SAMPLE:97691.1 BROAD:SEQUENCING_SAMPLE:97692.1 BROAD:SEQUENCING_SAMPLE:97695.1 BROAD:SEQUENCING_SAMPLE:97696.1 BROAD:SEQUENCING_SAMPLE:97697.1 BROAD:SEQUENCING_SAMPLE:97698.1 BROAD:SEQUENCING_SAMPLE:97699.1 BROAD:SEQUENCING_SAMPLE:97700.1 BROAD:SEQUENCING_SAMPLE:97701.1 BROAD:SEQUENCING_SAMPLE:97702.1 BROAD:SEQUENCING_SAMPLE:97704.1 BROAD:SEQUENCING_SAMPLE:97705.1 BROAD:SEQUENCING_SAMPLE:97707.1 BROAD:SEQUENCING_SAMPLE:97708.1 BROAD:SEQUENCING_SAMPLE:97709.1 BROAD:SEQUENCING_SAMPLE:97713.1 BROAD:SEQUENCING_SAMPLE:97714.1 BROAD:SEQUENCING_SAMPLE:97715.1 BROAD:SEQUENCING_SAMPLE:97716.1 BROAD:SEQUENCING_SAMPLE:97717.1 BROAD:SEQUENCING_SAMPLE:97718.1 BROAD:SEQUENCING_SAMPLE:97720.1 BROAD:SEQUENCING_SAMPLE:97722.1 BROAD:SEQUENCING_SAMPLE:97725.1 BROAD:SEQUENCING_SAMPLE:97727.1 BROAD:SEQUENCING_SAMPLE:97729.1 BROAD:SEQUENCING_SAMPLE:97731.1 BROAD:SEQUENCING_SAMPLE:97733.1 BROAD:SEQUENCING_SAMPLE:97734.1 BROAD:SEQUENCING_SAMPLE:97735.1 BROAD:SEQUENCING_SAMPLE:97736.1 BROAD:SEQUENCING_SAMPLE:97737.1 BROAD:SEQUENCING_SAMPLE:97739.1 BROAD:SEQUENCING_SAMPLE:97742.1 BROAD:SEQUENCING_SAMPLE:97744.1 BROAD:SEQUENCING_SAMPLE:97746.1 BROAD:SEQUENCING_SAMPLE:97748.1 BROAD:SEQUENCING_SAMPLE:97750.1 BROAD:SEQUENCING_SAMPLE:97761.1 BROAD:SEQUENCING_SAMPLE:97792.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>projects</TAG>
        <VALUE>G12756 G12795 G12846 G12847 G12850 G12852 G12856 G12857 G12859 G12860 G12861 G12862 G12863 G12864 G12865 G12866 G12867 G12868 G12869 G12870 G12871 G12872 G12874 G12875 G12876 G12877 G12878 G12879 G12880 G12881 G12882 G12885 G12886 G12887 G12888 G12889 G12890 G12891 G12892 G12894 G12895 G12897 G12898 G12899 G12903 G12904 G12905 G12906 G12907 G12908 G12910 G12912 G12915 G12917 G12919 G12921 G12923 G12924 G12925 G12926 G12927 G12929 G12932 G12934 G12936 G12938 G12940 G12951 G12982</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_requests</TAG>
        <VALUE>25125, 25126, 25127, 25128</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX090043" center_name="BI" alias="235197.WR25125.0109340427.747197110413.Marseille.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX090043</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">235197.WR25125.0109340427.747197110413.Marseille.S</SUBMITTER_ID>
      <UUID>8f320c5d-03b8-485f-849f-841c6ac2316e</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of metagenomic library '0109340427' containing sample '10181-ST-8'</TITLE>
    <STUDY_REF accession="SRP001634">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA63661</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Metagenome from Infant Gut Samples">Microbial composition of samples from infant gut human_metagenome_ltp_G9M_WGS_Environment</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of unclassified sequences via polymerase chain reaction</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS372620">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS372620</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA218187.10181-ST-8</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109340427</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">AAGACGAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="14">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>32</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-04-16 01:07:35.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Standard 454 Base Calling</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gene</TAG>
        <VALUE>16S V3-V5 region</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>97574.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>library_strategy</TAG>
        <VALUE>targeted-locus</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97574.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12764</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25125</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX090044" center_name="BI" alias="235197.WR25125.0109340369.747197110413.Edinburgh.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX090044</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">235197.WR25125.0109340369.747197110413.Edinburgh.S</SUBMITTER_ID>
      <UUID>b0305472-f868-4a50-b9a3-4f4e7c73a7a3</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of metagenomic library '0109340369' containing sample '10761-ST-14'</TITLE>
    <STUDY_REF accession="SRP001634">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA63661</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Metagenome from Infant Gut Samples">Microbial composition of samples from infant gut human_metagenome_ltp_G9M_WGS_Environment</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS414263">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS414263</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828356</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Broad Institute">10761-ST-14</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109340369</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="10" base_coord="5">
              <BASECALL min_match="10" max_mismatch="0" match_edge="full">TTCCGAGGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>33</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-04-16 01:07:35.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Standard 454 Base Calling</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gene</TAG>
        <VALUE>16S V3-V5 region</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>97638.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>library_strategy</TAG>
        <VALUE>targeted-locus</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97638.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12828</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25125</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX090045" center_name="BI" alias="235197.WR25126.0109339524.748398110415.Luxembourg.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX090045</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">235197.WR25126.0109339524.748398110415.Luxembourg.S</SUBMITTER_ID>
      <UUID>85bf1405-73b0-47c6-8775-6f2fd224c6e8</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of metagenomic library '0109339524' containing sample '10542-ST-21'</TITLE>
    <STUDY_REF accession="SRP001634">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA63661</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Metagenome from Infant Gut Samples">Microbial composition of samples from infant gut human_metagenome_ltp_G9M_WGS_Environment</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS414261">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS414261</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828392</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Broad Institute">10542-ST-21</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109339524</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">AAGAGTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
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          <READ_SPEC>
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          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
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            <READ_INDEX>0</READ_INDEX>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Khartoum">barcode</READ_LABEL>
          </MEMBER>
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              <PRIMARY_ID>SRS414192</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828370</EXTERNAL_ID>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Kigali">barcode</READ_LABEL>
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              <PRIMARY_ID>SRS414221</PRIMARY_ID>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Kingston">barcode</READ_LABEL>
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              <PRIMARY_ID>SRS414211</PRIMARY_ID>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Kinshasa">barcode</READ_LABEL>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS414214</PRIMARY_ID>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Kishinev">barcode</READ_LABEL>
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              <PRIMARY_ID>SRS414114</PRIMARY_ID>
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              <EXTERNAL_ID namespace="Broad Institute">10341-ST-21</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Lima">barcode</READ_LABEL>
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              <PRIMARY_ID>SRS414154</PRIMARY_ID>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Lisbon">barcode</READ_LABEL>
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              <PRIMARY_ID>SRS414261</PRIMARY_ID>
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              <EXTERNAL_ID namespace="Broad Institute">10542-ST-21</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Luxembourg">barcode</READ_LABEL>
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          <MEMBER member_name="Madrid_TTCGTTATC" proportion="0.01190476" accession="SRS414166">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414166</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828337</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10191-ST-11</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Madrid">barcode</READ_LABEL>
          </MEMBER>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS414276</PRIMARY_ID>
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              <EXTERNAL_ID namespace="Broad Institute">10121-ST-11</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Managua">barcode</READ_LABEL>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS414163</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828377</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10501-ST-8</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Maputo">barcode</READ_LABEL>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS414197</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828325</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10501-ST-21</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Maseru">barcode</READ_LABEL>
          </MEMBER>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS414133</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828332</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10881-ST-11</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Minsk">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Mogadishu_ACGTTCCAC" proportion="0.01190476" accession="SRS414242">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414242</PRIMARY_ID>
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              <EXTERNAL_ID namespace="Broad Institute">10491-ST-14</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Mogadishu">barcode</READ_LABEL>
          </MEMBER>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS414155</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828278</EXTERNAL_ID>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Monaco">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Monrovia_TCCAAGTC" proportion="0.01190476" accession="SRS414212">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414212</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828341</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10501-ST-14</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Monrovia">barcode</READ_LABEL>
          </MEMBER>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS414152</PRIMARY_ID>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Moscow">barcode</READ_LABEL>
          </MEMBER>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS414168</PRIMARY_ID>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Muscat">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Nairobi_CCGGCCAC" proportion="0.01190476" accession="SRS414275">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414275</PRIMARY_ID>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Nairobi">barcode</READ_LABEL>
          </MEMBER>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS414194</PRIMARY_ID>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Nassau">barcode</READ_LABEL>
          </MEMBER>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS414268</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828262</EXTERNAL_ID>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Nicosia">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Oslo_TTGTGTTC" proportion="0.01190476" accession="SRS372614">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS372614</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">PRJNA218187.10402-ST-21</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Oslo">barcode</READ_LABEL>
          </MEMBER>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS414165</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828435</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10882-ST-5</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Ottawa">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Paris_TCCGCTC" proportion="0.01190476" accession="SRS414127">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414127</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828349</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10471-ST-11</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Paris">barcode</READ_LABEL>
          </MEMBER>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS414158</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828314</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10901-ST-11</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Prague">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Pretoria_AACGGAGTC" proportion="0.01190476" accession="SRS414230">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414230</PRIMARY_ID>
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              <EXTERNAL_ID namespace="Broad Institute">10551-ST-14</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Pretoria">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Pyongyang_TCTCCGTC" proportion="0.01190476" accession="SRS414237">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414237</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828334</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10311-ST-21</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Pyongyang">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Quito_AAGGTGC" proportion="0.01190476" accession="SRS414179">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414179</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828303</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10381-ST-14</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Quito">barcode</READ_LABEL>
          </MEMBER>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS414135</PRIMARY_ID>
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              <EXTERNAL_ID namespace="Broad Institute">10542-ST-14</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Rabat">barcode</READ_LABEL>
          </MEMBER>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS414175</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828440</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10311-ST-14</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Riga">barcode</READ_LABEL>
          </MEMBER>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS414120</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828299</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10581-ST-21</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Rome">barcode</READ_LABEL>
          </MEMBER>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS414222</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828296</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10911-ST-14</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Santiago">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Sarajevo_CGACTC" proportion="0.01190476" accession="SRS414235">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414235</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828288</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10941-ST-14</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Sarajevo">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Seoul_AACCTGGC" proportion="0.01190476" accession="SRS414130">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414130</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828399</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10301-ST-21</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Seoul">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Sofia_AAGCCGC" proportion="0.01190476" accession="SRS414138">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414138</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828385</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10891-ST-8</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Sofia">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Stockholm_TTAAGATTC" proportion="0.01190476" accession="SRS414250">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414250</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828383</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10321-ST-11</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Stockholm">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Suva_TAATCTC" proportion="0.01190476" accession="SRS414123">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414123</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828266</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10461-ST-14</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Suva">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Tarawa_AATGGTAC" proportion="0.01190476" accession="SRS414151">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS414151</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828338</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10121-ST-8</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Tarawa">barcode</READ_LABEL>
          </MEMBER>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS414153</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828428</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10622-ST-5</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Tehran">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Tokyo_TATTCGTC" proportion="0.01190476" accession="SRS371397">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS371397</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">PRJNA218187.10541-ST-8</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Tokyo">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="Tripoli_TTCGCGAC" proportion="0.01190476" accession="SRS414264">
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              <EXTERNAL_ID namespace="Broad Institute">10521-ST-8</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Tripoli">barcode</READ_LABEL>
          </MEMBER>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS414128</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828439</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10541-ST-5</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Vaduz">barcode</READ_LABEL>
          </MEMBER>
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              <PRIMARY_ID>SRS414225</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828391</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10542-ST-8</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Valletta">barcode</READ_LABEL>
          </MEMBER>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS414162</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828330</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10931-ST-21</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Vienna">barcode</READ_LABEL>
          </MEMBER>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS414190</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828382</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10472-ST-8</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Warsaw">barcode</READ_LABEL>
          </MEMBER>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS414236</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828293</EXTERNAL_ID>
              <EXTERNAL_ID namespace="Broad Institute">10121-ST-21</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Wellington">barcode</READ_LABEL>
          </MEMBER>
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              <PRIMARY_ID>SRS414170</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN01828283</EXTERNAL_ID>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Zagreb">barcode</READ_LABEL>
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        </POOL>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0101931683</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
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            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
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            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE base_coord="5">
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              <BASECALL read_group_tag="Accra" min_match="7" max_mismatch="0" match_edge="full">AGTCGAC</BASECALL>
              <BASECALL read_group_tag="Algiers" min_match="6" max_mismatch="0" match_edge="full">TGAAGC</BASECALL>
              <BASECALL read_group_tag="Amman" min_match="8" max_mismatch="0" match_edge="full">TAGGAATC</BASECALL>
              <BASECALL read_group_tag="Amsterdam" min_match="8" max_mismatch="0" match_edge="full">AGGTTGTC</BASECALL>
              <BASECALL read_group_tag="Asuncion" min_match="8" max_mismatch="0" match_edge="full">TTATCGGC</BASECALL>
              <BASECALL read_group_tag="Athens" min_match="7" max_mismatch="0" match_edge="full">ACGGCTC</BASECALL>
              <BASECALL read_group_tag="Baku" min_match="6" max_mismatch="0" match_edge="full">CGTGAC</BASECALL>
              <BASECALL read_group_tag="Bamako" min_match="8" max_mismatch="0" match_edge="full">TTGACAAC</BASECALL>
              <BASECALL read_group_tag="Bangui" min_match="7" max_mismatch="0" match_edge="full">AGTTGGC</BASECALL>
              <BASECALL read_group_tag="Beijing" min_match="7" max_mismatch="0" match_edge="full">AGGCGGC</BASECALL>
              <BASECALL read_group_tag="Beirut" min_match="8" max_mismatch="0" match_edge="full">AACACAAC</BASECALL>
              <BASECALL read_group_tag="Berlin" min_match="7" max_mismatch="0" match_edge="full">TATTGAC</BASECALL>
              <BASECALL read_group_tag="Bern" min_match="9" max_mismatch="0" match_edge="full">TGGTTGGTC</BASECALL>
              <BASECALL read_group_tag="Bishkek" min_match="8" max_mismatch="0" match_edge="full">ACGAAGTC</BASECALL>
              <BASECALL read_group_tag="Bissau" min_match="7" max_mismatch="0" match_edge="full">CCAGGAC</BASECALL>
              <BASECALL read_group_tag="Bogota" min_match="7" max_mismatch="0" match_edge="full">CGGTATC</BASECALL>
              <BASECALL read_group_tag="Bratislava" min_match="9" max_mismatch="0" match_edge="full">ACCGGAAGC</BASECALL>
              <BASECALL read_group_tag="Brazzaville" min_match="7" max_mismatch="0" match_edge="full">ACAAGGC</BASECALL>
              <BASECALL read_group_tag="Bridgetown" min_match="6" max_mismatch="0" match_edge="full">CCTCTC</BASECALL>
              <BASECALL read_group_tag="Brussels" min_match="6" max_mismatch="0" match_edge="full">AGACAC</BASECALL>
              <BASECALL read_group_tag="Budapest" min_match="7" max_mismatch="0" match_edge="full">ACTCCTC</BASECALL>
              <BASECALL read_group_tag="Cairo" min_match="7" max_mismatch="0" match_edge="full">TCTTGGC</BASECALL>
              <BASECALL read_group_tag="Canberra" min_match="6" max_mismatch="0" match_edge="full">ACTTGC</BASECALL>
              <BASECALL read_group_tag="Colombo" min_match="9" max_mismatch="0" match_edge="full">ACCGTAATC</BASECALL>
              <BASECALL read_group_tag="Conakry" min_match="7" max_mismatch="0" match_edge="full">TCTCGAC</BASECALL>
              <BASECALL read_group_tag="Copenhagen" min_match="7" max_mismatch="0" match_edge="full">AACCAGC</BASECALL>
              <BASECALL read_group_tag="Dakar" min_match="8" max_mismatch="0" match_edge="full">AACGAGGC</BASECALL>
              <BASECALL read_group_tag="Damascus" min_match="9" max_mismatch="0" match_edge="full">TGTCCGGTC</BASECALL>
              <BASECALL read_group_tag="Djibouti" min_match="7" max_mismatch="0" match_edge="full">TTCGAGC</BASECALL>
              <BASECALL read_group_tag="Doha" min_match="8" max_mismatch="0" match_edge="full">ATTCGTAC</BASECALL>
              <BASECALL read_group_tag="Dublin" min_match="7" max_mismatch="0" match_edge="full">AAGGCAC</BASECALL>
              <BASECALL read_group_tag="Guatemala" min_match="7" max_mismatch="0" match_edge="full">TGCGTTC</BASECALL>
              <BASECALL read_group_tag="Havana" min_match="7" max_mismatch="0" match_edge="full">ATACCAC</BASECALL>
              <BASECALL read_group_tag="Jakarta" min_match="7" max_mismatch="0" match_edge="full">TTCCTGC</BASECALL>
              <BASECALL read_group_tag="Jerusalem" min_match="8" max_mismatch="0" match_edge="full">AACAACTC</BASECALL>
              <BASECALL read_group_tag="Kathmandu" min_match="8" max_mismatch="0" match_edge="full">TGTCGGAC</BASECALL>
              <BASECALL read_group_tag="Khartoum" min_match="9" max_mismatch="0" match_edge="full">ACCTTGGTC</BASECALL>
              <BASECALL read_group_tag="Kigali" min_match="8" max_mismatch="0" match_edge="full">AGTCCGTC</BASECALL>
              <BASECALL read_group_tag="Kingston" min_match="8" max_mismatch="0" match_edge="full">TGCCGAAC</BASECALL>
              <BASECALL read_group_tag="Kinshasa" min_match="7" max_mismatch="0" match_edge="full">TGACGAC</BASECALL>
              <BASECALL read_group_tag="Kishinev" min_match="8" max_mismatch="0" match_edge="full">CGGTCTTC</BASECALL>
              <BASECALL read_group_tag="Lima" min_match="8" max_mismatch="0" match_edge="full">AAGAAGAC</BASECALL>
              <BASECALL read_group_tag="Lisbon" min_match="8" max_mismatch="0" match_edge="full">CTTCCTTC</BASECALL>
              <BASECALL read_group_tag="Luxembourg" min_match="8" max_mismatch="0" match_edge="full">AAGAGTTC</BASECALL>
              <BASECALL read_group_tag="Madrid" min_match="9" max_mismatch="0" match_edge="full">TTCGTTATC</BASECALL>
              <BASECALL read_group_tag="Managua" min_match="8" max_mismatch="0" match_edge="full">TGGTGAAC</BASECALL>
              <BASECALL read_group_tag="Maputo" min_match="8" max_mismatch="0" match_edge="full">TGACCGTC</BASECALL>
              <BASECALL read_group_tag="Maseru" min_match="8" max_mismatch="0" match_edge="full">TTCTTGAC</BASECALL>
              <BASECALL read_group_tag="Minsk" min_match="6" max_mismatch="0" match_edge="full">ACTCAC</BASECALL>
              <BASECALL read_group_tag="Mogadishu" min_match="9" max_mismatch="0" match_edge="full">ACGTTCCAC</BASECALL>
              <BASECALL read_group_tag="Monaco" min_match="8" max_mismatch="0" match_edge="full">AAGGCCTC</BASECALL>
              <BASECALL read_group_tag="Monrovia" min_match="8" max_mismatch="0" match_edge="full">TCCAAGTC</BASECALL>
              <BASECALL read_group_tag="Moscow" min_match="8" max_mismatch="0" match_edge="full">CCTTCCGC</BASECALL>
              <BASECALL read_group_tag="Muscat" min_match="8" max_mismatch="0" match_edge="full">CCACGGTC</BASECALL>
              <BASECALL read_group_tag="Nairobi" min_match="8" max_mismatch="0" match_edge="full">CCGGCCAC</BASECALL>
              <BASECALL read_group_tag="Nassau" min_match="6" max_mismatch="0" match_edge="full">ACGCGC</BASECALL>
              <BASECALL read_group_tag="Nicosia" min_match="7" max_mismatch="0" match_edge="full">TCGCGGC</BASECALL>
              <BASECALL read_group_tag="Oslo" min_match="8" max_mismatch="0" match_edge="full">TTGTGTTC</BASECALL>
              <BASECALL read_group_tag="Ottawa" min_match="7" max_mismatch="0" match_edge="full">CAAGAAC</BASECALL>
              <BASECALL read_group_tag="Paris" min_match="7" max_mismatch="0" match_edge="full">TCCGCTC</BASECALL>
              <BASECALL read_group_tag="Prague" min_match="7" max_mismatch="0" match_edge="full">ATCTTAC</BASECALL>
              <BASECALL read_group_tag="Pretoria" min_match="9" max_mismatch="0" match_edge="full">AACGGAGTC</BASECALL>
              <BASECALL read_group_tag="Pyongyang" min_match="8" max_mismatch="0" match_edge="full">TCTCCGTC</BASECALL>
              <BASECALL read_group_tag="Quito" min_match="7" max_mismatch="0" match_edge="full">AAGGTGC</BASECALL>
              <BASECALL read_group_tag="Rabat" min_match="8" max_mismatch="0" match_edge="full">ACTAATTC</BASECALL>
              <BASECALL read_group_tag="Riga" min_match="8" max_mismatch="0" match_edge="full">TTCGTGGC</BASECALL>
              <BASECALL read_group_tag="Rome" min_match="8" max_mismatch="0" match_edge="full">ACACGGAC</BASECALL>
              <BASECALL read_group_tag="Santiago" min_match="7" max_mismatch="0" match_edge="full">TATCAAC</BASECALL>
              <BASECALL read_group_tag="Sarajevo" min_match="6" max_mismatch="0" match_edge="full">CGACTC</BASECALL>
              <BASECALL read_group_tag="Seoul" min_match="8" max_mismatch="0" match_edge="full">AACCTGGC</BASECALL>
              <BASECALL read_group_tag="Sofia" min_match="7" max_mismatch="0" match_edge="full">AAGCCGC</BASECALL>
              <BASECALL read_group_tag="Stockholm" min_match="9" max_mismatch="0" match_edge="full">TTAAGATTC</BASECALL>
              <BASECALL read_group_tag="Suva" min_match="7" max_mismatch="0" match_edge="full">TAATCTC</BASECALL>
              <BASECALL read_group_tag="Tarawa" min_match="8" max_mismatch="0" match_edge="full">AATGGTAC</BASECALL>
              <BASECALL read_group_tag="Tehran" min_match="7" max_mismatch="0" match_edge="full">TTCATAC</BASECALL>
              <BASECALL read_group_tag="Tokyo" min_match="8" max_mismatch="0" match_edge="full">TATTCGTC</BASECALL>
              <BASECALL read_group_tag="Tripoli" min_match="8" max_mismatch="0" match_edge="full">TTCGCGAC</BASECALL>
              <BASECALL read_group_tag="Vaduz" min_match="8" max_mismatch="0" match_edge="full">CCGGTCGC</BASECALL>
              <BASECALL read_group_tag="Valletta" min_match="8" max_mismatch="0" match_edge="full">TCCAGAAC</BASECALL>
              <BASECALL read_group_tag="Vienna" min_match="6" max_mismatch="0" match_edge="full">TCACAC</BASECALL>
              <BASECALL read_group_tag="Warsaw" min_match="8" max_mismatch="0" match_edge="full">TTCTCAAC</BASECALL>
              <BASECALL read_group_tag="Wellington" min_match="8" max_mismatch="0" match_edge="full">ACGAGAAC</BASECALL>
              <BASECALL read_group_tag="Zagreb" min_match="7" max_mismatch="0" match_edge="full">AGACCTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-04-16 05:58:28.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Standard 454 Base Calling</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gene</TAG>
        <VALUE>16S V3-V5 region</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_ids</TAG>
        <VALUE>97656.1 97657.1 97658.1 97659.1 97660.1 97661.1 97662.1 97663.1 97664.1 97666.1 97667.1 97668.1 97669.1 97670.1 97671.1 97672.1 97673.1 97674.1 97675.1 97676.1 97677.1 97678.1 97679.1 97680.1 97681.1 97682.1 97684.1 97685.1 97686.1 97687.1 97688.1 97689.1 97690.1 97691.1 97692.1 97693.1 97695.1 97696.1 97697.1 97698.1 97699.1 97700.1 97701.1 97702.1 97703.1 97704.1 97705.1 97706.1 97707.1 97708.1 97709.1 97710.1 97711.1 97713.1 97714.1 97715.1 97716.1 97717.1 97718.1 97719.1 97720.1 97721.1 97722.1 97724.1 97725.1 97726.1 97727.1 97729.1 97731.1 97733.1 97734.1 97735.1 97736.1 97737.1 97739.1 97742.1 97744.1 97745.1 97746.1 97747.1 97748.1 97749.1 97750.1 97751.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>library_strategy</TAG>
        <VALUE>targeted-locus</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsids</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97656.1 BROAD:SEQUENCING_SAMPLE:97657.1 BROAD:SEQUENCING_SAMPLE:97658.1 BROAD:SEQUENCING_SAMPLE:97659.1 BROAD:SEQUENCING_SAMPLE:97660.1 BROAD:SEQUENCING_SAMPLE:97661.1 BROAD:SEQUENCING_SAMPLE:97662.1 BROAD:SEQUENCING_SAMPLE:97663.1 BROAD:SEQUENCING_SAMPLE:97664.1 BROAD:SEQUENCING_SAMPLE:97666.1 BROAD:SEQUENCING_SAMPLE:97667.1 BROAD:SEQUENCING_SAMPLE:97668.1 BROAD:SEQUENCING_SAMPLE:97669.1 BROAD:SEQUENCING_SAMPLE:97670.1 BROAD:SEQUENCING_SAMPLE:97671.1 BROAD:SEQUENCING_SAMPLE:97672.1 BROAD:SEQUENCING_SAMPLE:97673.1 BROAD:SEQUENCING_SAMPLE:97674.1 BROAD:SEQUENCING_SAMPLE:97675.1 BROAD:SEQUENCING_SAMPLE:97676.1 BROAD:SEQUENCING_SAMPLE:97677.1 BROAD:SEQUENCING_SAMPLE:97678.1 BROAD:SEQUENCING_SAMPLE:97679.1 BROAD:SEQUENCING_SAMPLE:97680.1 BROAD:SEQUENCING_SAMPLE:97681.1 BROAD:SEQUENCING_SAMPLE:97682.1 BROAD:SEQUENCING_SAMPLE:97684.1 BROAD:SEQUENCING_SAMPLE:97685.1 BROAD:SEQUENCING_SAMPLE:97686.1 BROAD:SEQUENCING_SAMPLE:97687.1 BROAD:SEQUENCING_SAMPLE:97688.1 BROAD:SEQUENCING_SAMPLE:97689.1 BROAD:SEQUENCING_SAMPLE:97690.1 BROAD:SEQUENCING_SAMPLE:97691.1 BROAD:SEQUENCING_SAMPLE:97692.1 BROAD:SEQUENCING_SAMPLE:97693.1 BROAD:SEQUENCING_SAMPLE:97695.1 BROAD:SEQUENCING_SAMPLE:97696.1 BROAD:SEQUENCING_SAMPLE:97697.1 BROAD:SEQUENCING_SAMPLE:97698.1 BROAD:SEQUENCING_SAMPLE:97699.1 BROAD:SEQUENCING_SAMPLE:97700.1 BROAD:SEQUENCING_SAMPLE:97701.1 BROAD:SEQUENCING_SAMPLE:97702.1 BROAD:SEQUENCING_SAMPLE:97703.1 BROAD:SEQUENCING_SAMPLE:97704.1 BROAD:SEQUENCING_SAMPLE:97705.1 BROAD:SEQUENCING_SAMPLE:97706.1 BROAD:SEQUENCING_SAMPLE:97707.1 BROAD:SEQUENCING_SAMPLE:97708.1 BROAD:SEQUENCING_SAMPLE:97709.1 BROAD:SEQUENCING_SAMPLE:97710.1 BROAD:SEQUENCING_SAMPLE:97711.1 BROAD:SEQUENCING_SAMPLE:97713.1 BROAD:SEQUENCING_SAMPLE:97714.1 BROAD:SEQUENCING_SAMPLE:97715.1 BROAD:SEQUENCING_SAMPLE:97716.1 BROAD:SEQUENCING_SAMPLE:97717.1 BROAD:SEQUENCING_SAMPLE:97718.1 BROAD:SEQUENCING_SAMPLE:97719.1 BROAD:SEQUENCING_SAMPLE:97720.1 BROAD:SEQUENCING_SAMPLE:97721.1 BROAD:SEQUENCING_SAMPLE:97722.1 BROAD:SEQUENCING_SAMPLE:97724.1 BROAD:SEQUENCING_SAMPLE:97725.1 BROAD:SEQUENCING_SAMPLE:97726.1 BROAD:SEQUENCING_SAMPLE:97727.1 BROAD:SEQUENCING_SAMPLE:97729.1 BROAD:SEQUENCING_SAMPLE:97731.1 BROAD:SEQUENCING_SAMPLE:97733.1 BROAD:SEQUENCING_SAMPLE:97734.1 BROAD:SEQUENCING_SAMPLE:97735.1 BROAD:SEQUENCING_SAMPLE:97736.1 BROAD:SEQUENCING_SAMPLE:97737.1 BROAD:SEQUENCING_SAMPLE:97739.1 BROAD:SEQUENCING_SAMPLE:97742.1 BROAD:SEQUENCING_SAMPLE:97744.1 BROAD:SEQUENCING_SAMPLE:97745.1 BROAD:SEQUENCING_SAMPLE:97746.1 BROAD:SEQUENCING_SAMPLE:97747.1 BROAD:SEQUENCING_SAMPLE:97748.1 BROAD:SEQUENCING_SAMPLE:97749.1 BROAD:SEQUENCING_SAMPLE:97750.1 BROAD:SEQUENCING_SAMPLE:97751.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>projects</TAG>
        <VALUE>G12846 G12847 G12848 G12849 G12850 G12851 G12852 G12853 G12854 G12856 G12857 G12858 G12859 G12860 G12861 G12862 G12863 G12864 G12865 G12866 G12867 G12868 G12869 G12870 G12871 G12872 G12874 G12875 G12876 G12877 G12878 G12879 G12880 G12881 G12882 G12883 G12885 G12886 G12887 G12888 G12889 G12890 G12891 G12892 G12893 G12894 G12895 G12896 G12897 G12898 G12899 G12900 G12901 G12903 G12904 G12905 G12906 G12907 G12908 G12909 G12910 G12911 G12912 G12914 G12915 G12916 G12917 G12919 G12921 G12923 G12924 G12925 G12926 G12927 G12929 G12932 G12934 G12935 G12936 G12937 G12938 G12939 G12940 G12941</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX090053" center_name="BI" alias="235197.WR25126.0109339519.748398110415.Amsterdam.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX090053</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">235197.WR25126.0109339519.748398110415.Amsterdam.S</SUBMITTER_ID>
      <UUID>22858f97-932f-4605-98c6-2085b7a88aeb</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of metagenomic library '0109339519' containing sample '10501-ST-5'</TITLE>
    <STUDY_REF accession="SRP001634">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA63661</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Metagenome from Infant Gut Samples">Microbial composition of samples from infant gut human_metagenome_ltp_G9M_WGS_Environment</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS414251">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS414251</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828409</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Broad Institute">10501-ST-5</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109339519</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">AGGTTGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>31</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-04-16 05:58:28.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Standard 454 Base Calling</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gene</TAG>
        <VALUE>16S V3-V5 region</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>97721.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>library_strategy</TAG>
        <VALUE>targeted-locus</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97721.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12911</VALUE>
      </EXPERIMENT_ATTRIBUTE>
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        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
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            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">AGGCGGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="12">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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      <PIPELINE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
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      <PRIMARY_ID>SRX090559</PRIMARY_ID>
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          <READ_SPEC>
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              <BASECALL min_match="11" max_mismatch="0" match_edge="full">TTAACCGAATC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="16">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
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        </SPOT_DECODE_SPEC>
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      <LS454>
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        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25127</VALUE>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <EXTERNAL_ID namespace="biosample">SAMN01828262</EXTERNAL_ID>
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              <BASECALL min_match="7" max_mismatch="0" match_edge="full">TCGCGGC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="12">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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      <LS454>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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              <BASECALL min_match="8" max_mismatch="0" match_edge="full">ACGAAGTC</BASECALL>
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              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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          <READ_SPEC>
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      <EXPERIMENT_ATTRIBUTE>
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              <BASECALL min_match="6" max_mismatch="0" match_edge="full">TGAAGC</BASECALL>
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          <EXTERNAL_ID namespace="biosample">SAMN01828353</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Broad Institute">10691-ST-14</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109403927</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="10" base_coord="5">
              <BASECALL min_match="10" max_mismatch="0" match_edge="full">TTATTCCTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>33</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-04-16 01:07:34.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
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      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>gene</TAG>
        <VALUE>16S V3-V5 region</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>targeted-locus</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G13013</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25127</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX090572</PRIMARY_ID>
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      <UUID>75e5573a-09be-4661-b06f-201917948f14</UUID>
    </IDENTIFIERS>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA63661</EXTERNAL_ID>
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      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of unclassified sequences via polymerase chain reaction</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS371655</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA218187.10771-ST-5</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109389187</LIBRARY_NAME>
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        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
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            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="10" base_coord="5">
              <BASECALL min_match="10" max_mismatch="0" match_edge="full">AAGGAACTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>33</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      </PIPELINE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>targeted-locus</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97754.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12944</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25450</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX090573" center_name="BI" alias="235197.WR25126.0109339521.748738110623.Managua.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX090573</PRIMARY_ID>
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    <TITLE>454 whole genome shotgun sequencing of metagenomic library '0109339521' containing sample '10121-ST-11'</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
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    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS414276</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828287</EXTERNAL_ID>
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        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109339521</LIBRARY_NAME>
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        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <SINGLE/>
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      <SPOT_DESCRIPTOR>
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            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TGGTGAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>31</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-06-24 16:22:45.0</STEP_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>gene</TAG>
        <VALUE>16S V3-V5 region</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>targeted-locus</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97724.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12914</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
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      <PRIMARY_ID>SRX090574</PRIMARY_ID>
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    <TITLE>454 whole genome shotgun sequencing of metagenomic library '0109339547' containing sample '10541-ST-11'</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
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    </STUDY_REF>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS414275</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828402</EXTERNAL_ID>
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        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
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          <SINGLE/>
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            <READ_TYPE>Adapter</READ_TYPE>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">CCGGCCAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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      <LS454>
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      <PIPELINE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97701.1</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <SINGLE/>
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            <READ_TYPE>Adapter</READ_TYPE>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">TTAATTCCAC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">TCGGTTCAAC</BASECALL>
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              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
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            <READ_LABEL>forward</READ_LABEL>
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      <EXPERIMENT_ATTRIBUTE>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">AACTTCGGTC</BASECALL>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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      </SAMPLE_DESCRIPTOR>
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            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
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              <BASECALL min_match="8" max_mismatch="0" match_edge="full">CCGGCCAC</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
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        </SPOT_DECODE_SPEC>
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      <EXPERIMENT_ATTRIBUTE>
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              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TTCGCGAC</BASECALL>
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              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Genomic DNA</VALUE>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="9" max_mismatch="0" match_edge="full">ACCGTAATC</BASECALL>
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      <EXPERIMENT_ATTRIBUTE>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">AACCGGATAC</BASECALL>
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              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TGGTGAAC</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
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    </EXPERIMENT_ATTRIBUTES>
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          <SINGLE/>
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      <SPOT_DESCRIPTOR>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
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              <BASECALL min_match="7" max_mismatch="0" match_edge="full">AGGCGGC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="12">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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      <LS454>
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      <PIPELINE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
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      <PRIMARY_ID>SRX090590</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">TTCCGGCCGC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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      <LS454>
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        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Genomic DNA</VALUE>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">AAGTCGGAAC</BASECALL>
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              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
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          <READ_SPEC>
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            </IDENTIFIERS>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Khartoum">barcode</READ_LABEL>
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              <PRIMARY_ID>SRS414192</PRIMARY_ID>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Kigali">barcode</READ_LABEL>
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            </IDENTIFIERS>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Kinshasa">barcode</READ_LABEL>
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              <PRIMARY_ID>SRS414214</PRIMARY_ID>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Kishinev">barcode</READ_LABEL>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Lima">barcode</READ_LABEL>
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            </IDENTIFIERS>
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            </IDENTIFIERS>
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            </IDENTIFIERS>
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            <IDENTIFIERS>
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            </IDENTIFIERS>
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            <IDENTIFIERS>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Minsk">barcode</READ_LABEL>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS414242</PRIMARY_ID>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Mogadishu">barcode</READ_LABEL>
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            <IDENTIFIERS>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Monaco">barcode</READ_LABEL>
          </MEMBER>
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            <IDENTIFIERS>
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            </IDENTIFIERS>
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            <IDENTIFIERS>
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            </IDENTIFIERS>
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            <IDENTIFIERS>
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            </IDENTIFIERS>
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            </IDENTIFIERS>
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            <IDENTIFIERS>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Nassau">barcode</READ_LABEL>
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            </IDENTIFIERS>
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              <SUBMITTER_ID namespace="BI">PRJNA218187.10291-ST-5</SUBMITTER_ID>
            </IDENTIFIERS>
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            </IDENTIFIERS>
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            </IDENTIFIERS>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Prague">barcode</READ_LABEL>
          </MEMBER>
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            </IDENTIFIERS>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Rabat">barcode</READ_LABEL>
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            <IDENTIFIERS>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Rome">barcode</READ_LABEL>
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            <IDENTIFIERS>
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            </IDENTIFIERS>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Seoul">barcode</READ_LABEL>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Sofia">barcode</READ_LABEL>
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            <IDENTIFIERS>
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              <EXTERNAL_ID namespace="Broad Institute">10461-ST-14</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Suva">barcode</READ_LABEL>
          </MEMBER>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Tarawa">barcode</READ_LABEL>
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              <SUBMITTER_ID namespace="BI">PRJNA218187.10541-ST-8</SUBMITTER_ID>
            </IDENTIFIERS>
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              <EXTERNAL_ID namespace="Broad Institute">10542-ST-8</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Valletta">barcode</READ_LABEL>
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              <EXTERNAL_ID namespace="Broad Institute">10472-ST-8</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Warsaw">barcode</READ_LABEL>
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              <EXTERNAL_ID namespace="Broad Institute">10121-ST-21</EXTERNAL_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Wellington">barcode</READ_LABEL>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="Zagreb">barcode</READ_LABEL>
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        </POOL>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-7178</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
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            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
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            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE base_coord="5">
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              <BASECALL read_group_tag="Accra" min_match="7" max_mismatch="0" match_edge="full">AGTCGAC</BASECALL>
              <BASECALL read_group_tag="Algiers" min_match="6" max_mismatch="0" match_edge="full">TGAAGC</BASECALL>
              <BASECALL read_group_tag="Amman" min_match="8" max_mismatch="0" match_edge="full">TAGGAATC</BASECALL>
              <BASECALL read_group_tag="Asuncion" min_match="8" max_mismatch="0" match_edge="full">TTATCGGC</BASECALL>
              <BASECALL read_group_tag="Athens" min_match="7" max_mismatch="0" match_edge="full">ACGGCTC</BASECALL>
              <BASECALL read_group_tag="Baku" min_match="6" max_mismatch="0" match_edge="full">CGTGAC</BASECALL>
              <BASECALL read_group_tag="Bamako" min_match="8" max_mismatch="0" match_edge="full">TTGACAAC</BASECALL>
              <BASECALL read_group_tag="Beijing" min_match="7" max_mismatch="0" match_edge="full">AGGCGGC</BASECALL>
              <BASECALL read_group_tag="Beirut" min_match="8" max_mismatch="0" match_edge="full">AACACAAC</BASECALL>
              <BASECALL read_group_tag="Belem" min_match="9" max_mismatch="0" match_edge="full">TGGACCTTC</BASECALL>
              <BASECALL read_group_tag="Berlin" min_match="7" max_mismatch="0" match_edge="full">TATTGAC</BASECALL>
              <BASECALL read_group_tag="Bern" min_match="9" max_mismatch="0" match_edge="full">TGGTTGGTC</BASECALL>
              <BASECALL read_group_tag="Bhopal" min_match="10" max_mismatch="0" match_edge="full">AATACCGAAC</BASECALL>
              <BASECALL read_group_tag="Bishkek" min_match="8" max_mismatch="0" match_edge="full">ACGAAGTC</BASECALL>
              <BASECALL read_group_tag="Bissau" min_match="7" max_mismatch="0" match_edge="full">CCAGGAC</BASECALL>
              <BASECALL read_group_tag="Bogota" min_match="7" max_mismatch="0" match_edge="full">CGGTATC</BASECALL>
              <BASECALL read_group_tag="Bratislava" min_match="9" max_mismatch="0" match_edge="full">ACCGGAAGC</BASECALL>
              <BASECALL read_group_tag="Brazzaville" min_match="7" max_mismatch="0" match_edge="full">ACAAGGC</BASECALL>
              <BASECALL read_group_tag="Budapest" min_match="7" max_mismatch="0" match_edge="full">ACTCCTC</BASECALL>
              <BASECALL read_group_tag="Cairo" min_match="7" max_mismatch="0" match_edge="full">TCTTGGC</BASECALL>
              <BASECALL read_group_tag="Canberra" min_match="6" max_mismatch="0" match_edge="full">ACTTGC</BASECALL>
              <BASECALL read_group_tag="Conakry" min_match="7" max_mismatch="0" match_edge="full">TCTCGAC</BASECALL>
              <BASECALL read_group_tag="Copenhagen" min_match="7" max_mismatch="0" match_edge="full">AACCAGC</BASECALL>
              <BASECALL read_group_tag="Dakar" min_match="8" max_mismatch="0" match_edge="full">AACGAGGC</BASECALL>
              <BASECALL read_group_tag="Djibouti" min_match="7" max_mismatch="0" match_edge="full">TTCGAGC</BASECALL>
              <BASECALL read_group_tag="Doha" min_match="8" max_mismatch="0" match_edge="full">ATTCGTAC</BASECALL>
              <BASECALL read_group_tag="Dublin" min_match="7" max_mismatch="0" match_edge="full">AAGGCAC</BASECALL>
              <BASECALL read_group_tag="Guatemala" min_match="7" max_mismatch="0" match_edge="full">TGCGTTC</BASECALL>
              <BASECALL read_group_tag="Havana" min_match="7" max_mismatch="0" match_edge="full">ATACCAC</BASECALL>
              <BASECALL read_group_tag="Jakarta" min_match="7" max_mismatch="0" match_edge="full">TTCCTGC</BASECALL>
              <BASECALL read_group_tag="Jerusalem" min_match="8" max_mismatch="0" match_edge="full">AACAACTC</BASECALL>
              <BASECALL read_group_tag="Kathmandu" min_match="8" max_mismatch="0" match_edge="full">TGTCGGAC</BASECALL>
              <BASECALL read_group_tag="Khartoum" min_match="9" max_mismatch="0" match_edge="full">ACCTTGGTC</BASECALL>
              <BASECALL read_group_tag="Kigali" min_match="8" max_mismatch="0" match_edge="full">AGTCCGTC</BASECALL>
              <BASECALL read_group_tag="Kingston" min_match="8" max_mismatch="0" match_edge="full">TGCCGAAC</BASECALL>
              <BASECALL read_group_tag="Kinshasa" min_match="7" max_mismatch="0" match_edge="full">TGACGAC</BASECALL>
              <BASECALL read_group_tag="Kishinev" min_match="8" max_mismatch="0" match_edge="full">CGGTCTTC</BASECALL>
              <BASECALL read_group_tag="Lima" min_match="8" max_mismatch="0" match_edge="full">AAGAAGAC</BASECALL>
              <BASECALL read_group_tag="Lisbon" min_match="8" max_mismatch="0" match_edge="full">CTTCCTTC</BASECALL>
              <BASECALL read_group_tag="Luxembourg" min_match="8" max_mismatch="0" match_edge="full">AAGAGTTC</BASECALL>
              <BASECALL read_group_tag="Madrid" min_match="9" max_mismatch="0" match_edge="full">TTCGTTATC</BASECALL>
              <BASECALL read_group_tag="Maseru" min_match="8" max_mismatch="0" match_edge="full">TTCTTGAC</BASECALL>
              <BASECALL read_group_tag="Minsk" min_match="6" max_mismatch="0" match_edge="full">ACTCAC</BASECALL>
              <BASECALL read_group_tag="Mogadishu" min_match="9" max_mismatch="0" match_edge="full">ACGTTCCAC</BASECALL>
              <BASECALL read_group_tag="Monaco" min_match="8" max_mismatch="0" match_edge="full">AAGGCCTC</BASECALL>
              <BASECALL read_group_tag="Monrovia" min_match="8" max_mismatch="0" match_edge="full">TCCAAGTC</BASECALL>
              <BASECALL read_group_tag="Moscow" min_match="8" max_mismatch="0" match_edge="full">CCTTCCGC</BASECALL>
              <BASECALL read_group_tag="Muscat" min_match="8" max_mismatch="0" match_edge="full">CCACGGTC</BASECALL>
              <BASECALL read_group_tag="Nairobi" min_match="8" max_mismatch="0" match_edge="full">CCGGCCAC</BASECALL>
              <BASECALL read_group_tag="Nassau" min_match="6" max_mismatch="0" match_edge="full">ACGCGC</BASECALL>
              <BASECALL read_group_tag="Nicosia" min_match="7" max_mismatch="0" match_edge="full">TCGCGGC</BASECALL>
              <BASECALL read_group_tag="Osaka" min_match="10" max_mismatch="0" match_edge="full">TTCGTTCTTC</BASECALL>
              <BASECALL read_group_tag="Ottawa" min_match="7" max_mismatch="0" match_edge="full">CAAGAAC</BASECALL>
              <BASECALL read_group_tag="Paris" min_match="7" max_mismatch="0" match_edge="full">TCCGCTC</BASECALL>
              <BASECALL read_group_tag="Prague" min_match="7" max_mismatch="0" match_edge="full">ATCTTAC</BASECALL>
              <BASECALL read_group_tag="Quito" min_match="7" max_mismatch="0" match_edge="full">AAGGTGC</BASECALL>
              <BASECALL read_group_tag="Rabat" min_match="8" max_mismatch="0" match_edge="full">ACTAATTC</BASECALL>
              <BASECALL read_group_tag="Rome" min_match="8" max_mismatch="0" match_edge="full">ACACGGAC</BASECALL>
              <BASECALL read_group_tag="Santiago" min_match="7" max_mismatch="0" match_edge="full">TATCAAC</BASECALL>
              <BASECALL read_group_tag="Seoul" min_match="8" max_mismatch="0" match_edge="full">AACCTGGC</BASECALL>
              <BASECALL read_group_tag="Sofia" min_match="7" max_mismatch="0" match_edge="full">AAGCCGC</BASECALL>
              <BASECALL read_group_tag="Suva" min_match="7" max_mismatch="0" match_edge="full">TAATCTC</BASECALL>
              <BASECALL read_group_tag="Tarawa" min_match="8" max_mismatch="0" match_edge="full">AATGGTAC</BASECALL>
              <BASECALL read_group_tag="Tokyo" min_match="8" max_mismatch="0" match_edge="full">TATTCGTC</BASECALL>
              <BASECALL read_group_tag="Valletta" min_match="8" max_mismatch="0" match_edge="full">TCCAGAAC</BASECALL>
              <BASECALL read_group_tag="Warsaw" min_match="8" max_mismatch="0" match_edge="full">TTCTCAAC</BASECALL>
              <BASECALL read_group_tag="Wellington" min_match="8" max_mismatch="0" match_edge="full">ACGAGAAC</BASECALL>
              <BASECALL read_group_tag="Zagreb" min_match="7" max_mismatch="0" match_edge="full">AGACCTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-08-03 09:43:17.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.5.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Standard 454 Base Calling</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gene</TAG>
        <VALUE>16S V3-V5 region</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_ids</TAG>
        <VALUE>97566.1 97605.1 97656.1 97657.1 97660.1 97662.1 97666.1 97667.1 97669.1 97670.1 97671.1 97672.1 97673.1 97674.1 97675.1 97676.1 97677.1 97678.1 97679.1 97680.1 97681.1 97682.1 97684.1 97685.1 97686.1 97687.1 97688.1 97689.1 97690.1 97691.1 97692.1 97695.1 97696.1 97697.1 97698.1 97699.1 97700.1 97701.1 97702.1 97704.1 97705.1 97707.1 97708.1 97709.1 97713.1 97714.1 97715.1 97716.1 97717.1 97718.1 97720.1 97722.1 97725.1 97727.1 97729.1 97731.1 97733.1 97734.1 97735.1 97736.1 97737.1 97739.1 97742.1 97744.1 97746.1 97748.1 97750.1 97761.1 97792.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>library_strategy</TAG>
        <VALUE>targeted-locus</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsids</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97566.1 BROAD:SEQUENCING_SAMPLE:97605.1 BROAD:SEQUENCING_SAMPLE:97656.1 BROAD:SEQUENCING_SAMPLE:97657.1 BROAD:SEQUENCING_SAMPLE:97660.1 BROAD:SEQUENCING_SAMPLE:97662.1 BROAD:SEQUENCING_SAMPLE:97666.1 BROAD:SEQUENCING_SAMPLE:97667.1 BROAD:SEQUENCING_SAMPLE:97669.1 BROAD:SEQUENCING_SAMPLE:97670.1 BROAD:SEQUENCING_SAMPLE:97671.1 BROAD:SEQUENCING_SAMPLE:97672.1 BROAD:SEQUENCING_SAMPLE:97673.1 BROAD:SEQUENCING_SAMPLE:97674.1 BROAD:SEQUENCING_SAMPLE:97675.1 BROAD:SEQUENCING_SAMPLE:97676.1 BROAD:SEQUENCING_SAMPLE:97677.1 BROAD:SEQUENCING_SAMPLE:97678.1 BROAD:SEQUENCING_SAMPLE:97679.1 BROAD:SEQUENCING_SAMPLE:97680.1 BROAD:SEQUENCING_SAMPLE:97681.1 BROAD:SEQUENCING_SAMPLE:97682.1 BROAD:SEQUENCING_SAMPLE:97684.1 BROAD:SEQUENCING_SAMPLE:97685.1 BROAD:SEQUENCING_SAMPLE:97686.1 BROAD:SEQUENCING_SAMPLE:97687.1 BROAD:SEQUENCING_SAMPLE:97688.1 BROAD:SEQUENCING_SAMPLE:97689.1 BROAD:SEQUENCING_SAMPLE:97690.1 BROAD:SEQUENCING_SAMPLE:97691.1 BROAD:SEQUENCING_SAMPLE:97692.1 BROAD:SEQUENCING_SAMPLE:97695.1 BROAD:SEQUENCING_SAMPLE:97696.1 BROAD:SEQUENCING_SAMPLE:97697.1 BROAD:SEQUENCING_SAMPLE:97698.1 BROAD:SEQUENCING_SAMPLE:97699.1 BROAD:SEQUENCING_SAMPLE:97700.1 BROAD:SEQUENCING_SAMPLE:97701.1 BROAD:SEQUENCING_SAMPLE:97702.1 BROAD:SEQUENCING_SAMPLE:97704.1 BROAD:SEQUENCING_SAMPLE:97705.1 BROAD:SEQUENCING_SAMPLE:97707.1 BROAD:SEQUENCING_SAMPLE:97708.1 BROAD:SEQUENCING_SAMPLE:97709.1 BROAD:SEQUENCING_SAMPLE:97713.1 BROAD:SEQUENCING_SAMPLE:97714.1 BROAD:SEQUENCING_SAMPLE:97715.1 BROAD:SEQUENCING_SAMPLE:97716.1 BROAD:SEQUENCING_SAMPLE:97717.1 BROAD:SEQUENCING_SAMPLE:97718.1 BROAD:SEQUENCING_SAMPLE:97720.1 BROAD:SEQUENCING_SAMPLE:97722.1 BROAD:SEQUENCING_SAMPLE:97725.1 BROAD:SEQUENCING_SAMPLE:97727.1 BROAD:SEQUENCING_SAMPLE:97729.1 BROAD:SEQUENCING_SAMPLE:97731.1 BROAD:SEQUENCING_SAMPLE:97733.1 BROAD:SEQUENCING_SAMPLE:97734.1 BROAD:SEQUENCING_SAMPLE:97735.1 BROAD:SEQUENCING_SAMPLE:97736.1 BROAD:SEQUENCING_SAMPLE:97737.1 BROAD:SEQUENCING_SAMPLE:97739.1 BROAD:SEQUENCING_SAMPLE:97742.1 BROAD:SEQUENCING_SAMPLE:97744.1 BROAD:SEQUENCING_SAMPLE:97746.1 BROAD:SEQUENCING_SAMPLE:97748.1 BROAD:SEQUENCING_SAMPLE:97750.1 BROAD:SEQUENCING_SAMPLE:97761.1 BROAD:SEQUENCING_SAMPLE:97792.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>projects</TAG>
        <VALUE>G12756 G12795 G12846 G12847 G12850 G12852 G12856 G12857 G12859 G12860 G12861 G12862 G12863 G12864 G12865 G12866 G12867 G12868 G12869 G12870 G12871 G12872 G12874 G12875 G12876 G12877 G12878 G12879 G12880 G12881 G12882 G12885 G12886 G12887 G12888 G12889 G12890 G12891 G12892 G12894 G12895 G12897 G12898 G12899 G12903 G12904 G12905 G12906 G12907 G12908 G12910 G12912 G12915 G12917 G12919 G12921 G12923 G12924 G12925 G12926 G12927 G12929 G12932 G12934 G12936 G12938 G12940 G12951 G12982</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_requests</TAG>
        <VALUE>25125, 25126, 25127, 25128</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX092316" center_name="BI" alias="235197.WR25126.0109339730.748986110802.Kigali.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX092316</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">235197.WR25126.0109339730.748986110802.Kigali.S</SUBMITTER_ID>
      <UUID>66e23ab9-ca45-46b6-b9b6-742b585014de</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of metagenomic library '0109339730' containing sample '10471-ST-21'</TITLE>
    <STUDY_REF accession="SRP001634">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA63661</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Metagenome from Infant Gut Samples">Microbial composition of samples from infant gut human_metagenome_ltp_G9M_WGS_Environment</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS414192">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS414192</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828370</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Broad Institute">10471-ST-21</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109339730</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">AGTCCGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>31</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-08-03 09:43:17.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.5.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Standard 454 Base Calling</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gene</TAG>
        <VALUE>16S V3-V5 region</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>97737.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>library_strategy</TAG>
        <VALUE>targeted-locus</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97737.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12927</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX092317" center_name="BI" alias="235197.WR25126.0109339515.748986110802.Monaco.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX092317</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">235197.WR25126.0109339515.748986110802.Monaco.S</SUBMITTER_ID>
      <UUID>4c0ab224-0eaf-4e77-82a6-5d22ded9d268</UUID>
    </IDENTIFIERS>
    <TITLE>454 whole genome shotgun sequencing of metagenomic library '0109339515' containing sample '10541-ST-21'</TITLE>
    <STUDY_REF accession="SRP001634">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA63661</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Metagenome from Infant Gut Samples">Microbial composition of samples from infant gut human_metagenome_ltp_G9M_WGS_Environment</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS414155">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS414155</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828278</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Broad Institute">10541-ST-21</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109339515</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">AAGGCCTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS414135</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828279</EXTERNAL_ID>
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        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109339516</LIBRARY_NAME>
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        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
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              <BASECALL min_match="8" max_mismatch="0" match_edge="full">ACTAATTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
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        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
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      <PRIMARY_ID>SRX092327</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>454 sequencing of unclassified sequences via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS372710</PRIMARY_ID>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
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          <READ_SPEC>
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              <BASECALL min_match="10" max_mismatch="0" match_edge="full">AATACCGAAC</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="15">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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        </SPOT_DECODE_SPEC>
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      <LS454>
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        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
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        <TAG>work_request</TAG>
        <VALUE>25127</VALUE>
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      <PRIMARY_ID>SRX092328</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS414130</PRIMARY_ID>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
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          <READ_SPEC>
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            <READ_TYPE>BarCode</READ_TYPE>
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              <BASECALL min_match="8" max_mismatch="0" match_edge="full">AACCTGGC</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97704.1</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>25126</VALUE>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <READ_SPEC>
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              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TCGTTGTC</BASECALL>
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          <READ_SPEC>
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          <READ_SPEC>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Genomic DNA</VALUE>
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          <READ_SPEC>
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            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="12">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
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            <BASE_COORD>30</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
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      <LS454>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>25126</VALUE>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
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          <READ_SPEC>
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            <READ_LABEL>barcode</READ_LABEL>
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              <BASECALL min_match="9" max_mismatch="0" match_edge="full">TGGTTGGTC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="14">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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            <READ_TYPE>Forward</READ_TYPE>
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      <LS454>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
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        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
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      <PRIMARY_ID>SRX092332</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS414185</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828368</EXTERNAL_ID>
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          <SINGLE/>
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            <READ_LABEL>barcode</READ_LABEL>
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              <BASECALL min_match="7" max_mismatch="0" match_edge="full">CCAGGAC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_TYPE>Primer</READ_TYPE>
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              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
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        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="6" max_mismatch="0" match_edge="full">ACTCAC</BASECALL>
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              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Genomic DNA</VALUE>
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          <READ_SPEC>
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      <LS454>
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      <EXPERIMENT_ATTRIBUTE>
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    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <READ_SPEC>
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              <BASECALL min_match="8" max_mismatch="0" match_edge="full">CCTTCCGC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">TTCGTTATC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="14">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>32</BASE_COORD>
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        </SPOT_DECODE_SPEC>
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      <LS454>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
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    </EXPERIMENT_ATTRIBUTES>
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      <PRIMARY_ID>SRX092344</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>454 sequencing of unclassified sequences via polymerase chain reaction</DESIGN_DESCRIPTION>
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        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <SINGLE/>
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      <SPOT_DESCRIPTOR>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
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              <BASECALL min_match="6" max_mismatch="0" match_edge="full">CGTGAC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="11">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
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        <TAG>work_request</TAG>
        <VALUE>25128</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
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      <PRIMARY_ID>SRX092345</PRIMARY_ID>
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      <IDENTIFIERS>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <EXTERNAL_ID namespace="biosample">SAMN01828333</EXTERNAL_ID>
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          <SINGLE/>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
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            <READ_LABEL>barcode</READ_LABEL>
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            <READ_TYPE>BarCode</READ_TYPE>
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              <BASECALL min_match="6" max_mismatch="0" match_edge="full">ACGCGC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="11">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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      <LS454>
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        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97660.1</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
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        <VALUE>25126</VALUE>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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              <BASECALL min_match="8" max_mismatch="0" match_edge="full">AATGGTAC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
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          <READ_SPEC>
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            <READ_CLASS>Technical Read</READ_CLASS>
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              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TTCTTGAC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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      <LS454>
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    <TITLE>454 whole genome shotgun sequencing of metagenomic library '0109339731' containing sample '10541-ST-14'</TITLE>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
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            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">AAGGCAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="12">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
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            <BASE_COORD>30</BASE_COORD>
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        </SPOT_DECODE_SPEC>
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      <LS454>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12885</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <SINGLE/>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
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              <BASECALL min_match="8" max_mismatch="0" match_edge="full">CTTCCTTC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
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      <PIPELINE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12924</VALUE>
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        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
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    </EXPERIMENT_ATTRIBUTES>
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        <PRIMARY_ID>SRP001634</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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              <BASECALL min_match="7" max_mismatch="0" match_edge="full">CGGTATC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="12">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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            <READ_TYPE>BarCode</READ_TYPE>
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              <BASECALL min_match="7" max_mismatch="0" match_edge="full">ATCTTAC</BASECALL>
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              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Genomic DNA</VALUE>
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          <SINGLE/>
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      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
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              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
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          <READ_SPEC>
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              <BASECALL min_match="8" max_mismatch="0" match_edge="full">AAGAGTTC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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        </SPOT_DECODE_SPEC>
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      <LS454>
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      <EXPERIMENT_ATTRIBUTE>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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              <BASECALL min_match="7" max_mismatch="0" match_edge="full">TGCGTTC</BASECALL>
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            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="12">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Genomic DNA</VALUE>
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              <BASECALL min_match="8" max_mismatch="0" match_edge="full">ACGAGAAC</BASECALL>
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          <READ_SPEC>
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      <EXPERIMENT_ATTRIBUTE>
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          <EXTERNAL_ID namespace="Broad Institute">10961-ST-11</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109339570</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">TCGCGGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="12">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>30</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-08-03 09:43:17.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
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      </PIPELINE>
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    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Standard 454 Base Calling</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>gene</TAG>
        <VALUE>16S V3-V5 region</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>97676.1</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>targeted-locus</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97676.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12866</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX092398" center_name="BI" alias="235197.WR25126.0109339532.748986110802.Bishkek.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX092398</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">235197.WR25126.0109339532.748986110802.Bishkek.S</SUBMITTER_ID>
      <UUID>71e08746-69d5-4af2-81f6-5f49668f9921</UUID>
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    <TITLE>454 whole genome shotgun sequencing of metagenomic library '0109339532' containing sample '10301-ST-11'</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA63661</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Metagenome from Infant Gut Samples">Microbial composition of samples from infant gut human_metagenome_ltp_G9M_WGS_Environment</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS414269</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828404</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Broad Institute">10301-ST-11</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109339532</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
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            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">ACGAAGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="13">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>31</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-08-03 09:43:17.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.5.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Standard 454 Base Calling</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gene</TAG>
        <VALUE>16S V3-V5 region</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>97705.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>library_strategy</TAG>
        <VALUE>targeted-locus</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97705.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12895</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX092399" center_name="BI" alias="235197.WR25126.0109339495.748986110802.Khartoum.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX092399</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">235197.WR25126.0109339495.748986110802.Khartoum.S</SUBMITTER_ID>
      <UUID>d4a81b1f-cb84-4c27-a70d-a3a541d583eb</UUID>
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    <TITLE>454 whole genome shotgun sequencing of metagenomic library '0109339495' containing sample '10551-ST-21'</TITLE>
    <STUDY_REF accession="SRP001634">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001634</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA63661</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Metagenome from Infant Gut Samples">Microbial composition of samples from infant gut human_metagenome_ltp_G9M_WGS_Environment</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of human gut metagenome via polymerase chain reaction</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS414217">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS414217</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01828326</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Broad Institute">10551-ST-21</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>0109339495</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">ACCTTGGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>primer</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Primer</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="18" base_coord="14">
              <BASECALL min_match="4" max_mismatch="14" match_edge="full">CCGTCAATTCMTTTRAGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>32</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-08-03 09:43:17.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.5.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Standard 454 Base Calling</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gene</TAG>
        <VALUE>16S V3-V5 region</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>97748.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>library_strategy</TAG>
        <VALUE>targeted-locus</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:97748.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12938</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25126</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX099485" center_name="BI" alias="23039.WR25825.Pond-75861.B028JACXX110725.tagged_250.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX099485</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23039.WR25825.Pond-75861.B028JACXX110725.tagged_250.P</SUBMITTER_ID>
      <UUID>865dbf91-0ce0-4635-9e13-35c71201d505</UUID>
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    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-75861' containing sample 'Fusobacterium sp. 3_1_33'</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001771</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA38519</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 3_1_33">This strain will be used for comparative genome analysis Fusobacterium_nucleatum_subsp_animalis_3_1_33_ltp_HMPREF0406_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Fusobacterium nucleatum subsp. animalis 3_1_33 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002809">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002809</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 3_1_33</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Pond-75861</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="310" NOMINAL_SDEV="17.31829"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>210</SPOT_LENGTH>
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            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="102">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">ATAGCGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>110</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-08-06 13:26:27.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
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          <NOTES>Sequencer Application 1.4.8</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17342.9</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17342.9</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G14063</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25825</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX104191" center_name="BI" alias="22825.WR24988.Pond-62002.B084DABXX110425.tagged_861.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX104191</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22825.WR24988.Pond-62002.B084DABXX110425.tagged_861.P</SUBMITTER_ID>
      <UUID>5f5eab6b-3ea2-4b54-b47a-0f3c53f80906</UUID>
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    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-62002' containing sample 'BROAD:SEQUENCING_SAMPLE:22682.0'</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001666</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32461</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Coprobacillus sp. D6">Reference genome for the Human Microbiome Project Coprobacillus_sp_D6_ltp_HMPREF0273_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>low coverage of genome on Illumina</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS002764</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22682.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Pond-62002</LIBRARY_NAME>
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        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="96" NOMINAL_SDEV="26.38986"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>210</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="102">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">TCCTTGGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>110</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-05-05 13:32:34.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.10.36</VERSION>
          <NOTES>Sequencer Application 1.3.8</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
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          <READ_SPEC>
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        <EXTERNAL_ID namespace="Broad Institute" label="Bifidobacterium bifidum NCIMB 41171">Reference genome for the Human Microbiome Project Bifidobacterium_bifidum_NCIMB_41171_ltp_BBNG_WGS_Monoisolate</EXTERNAL_ID>
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        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:14161.19</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit</TAG>
        <VALUE>DNA/Polymerase Binding Kit 1.0 (24 rxn)</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit_barcode</TAG>
        <VALUE>110125001359802061511</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_template_prep_kit</TAG>
        <VALUE>DNA Template Prep Kit (8 rxn)</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_template_prep_kit_barcode</TAG>
        <VALUE>104889000640391031011</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G11236</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sequencing_protocol</TAG>
        <VALUE>Standard Sequencing</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>template_preparation_adaptor_sequence</TAG>
        <VALUE>ATCTCTCTCttttcctcctcctccgttgttgttgttGAGAGAGAT</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>template_preparation_kit_insert_size</TAG>
        <VALUE>2000</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>used_binding_kit_control</TAG>
        <VALUE>false</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>24809</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX109853" center_name="BI" alias="22825.WR25232.LR_81_Coprobacillus_1.5nM_loading.05132011_12cell.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX109853</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22825.WR25232.LR_81_Coprobacillus_1.5nM_loading.05132011_12cell.S</SUBMITTER_ID>
      <UUID>42fbb2ba-2c98-497f-a57c-d2195c658c71</UUID>
    </IDENTIFIERS>
    <TITLE>Whole Genome Sequencing and Assembly</TITLE>
    <STUDY_REF accession="SRP001666">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001666</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32461</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Coprobacillus sp. D6">Reference genome for the Human Microbiome Project Coprobacillus_sp_D6_ltp_HMPREF0273_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Fragment library</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002764">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002764</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22682.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>LR_81_Coprobacillus_1.5nM_loading</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Pacific Biosciences</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>Standard</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <PACBIO_SMRT>
        <INSTRUMENT_MODEL>PacBio RS</INSTRUMENT_MODEL>
      </PACBIO_SMRT>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
          <STEP_INDEX>2011-05-13 19:04:57.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Instrument Control Version</PROGRAM>
          <VERSION>1.2.1.0.87716</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-05-13 23:15:55.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Primary Analysis</PROGRAM>
          <VERSION>NRT@172.31.128.10:8082, SwVer=1210.87716, HwVer=1.0</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22682.9</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22682.9</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit</TAG>
        <VALUE>DNA/Polymerase Binding Kit 1.0 (24 rxn)</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit_barcode</TAG>
        <VALUE>110125001359802061511</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_template_prep_kit</TAG>
        <VALUE>DNA Template Prep Kit 1.0 (10 ug)</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_template_prep_kit_barcode</TAG>
        <VALUE>110128001322716102811</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12692</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sequencing_protocol</TAG>
        <VALUE>Standard Sequencing</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>template_preparation_adaptor_sequence</TAG>
        <VALUE>ATCTCTCTCttttcctcctcctccgttgttgttgttGAGAGAGAT</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>template_preparation_kit_insert_size</TAG>
        <VALUE>2000</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>used_binding_kit_control</TAG>
        <VALUE>true</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25232</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX109854" center_name="BI" alias="23039.WR25680.LR_105_Fusobacterium_Sp.07152011_8cell.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX109854</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23039.WR25680.LR_105_Fusobacterium_Sp.07152011_8cell.S</SUBMITTER_ID>
      <UUID>3343f667-e777-491b-8472-35284b82d0cf</UUID>
    </IDENTIFIERS>
    <TITLE>Whole Genome Sequencing and Assembly</TITLE>
    <STUDY_REF accession="SRP001771">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001771</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA38519</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 3_1_33">This strain will be used for comparative genome analysis Fusobacterium_nucleatum_subsp_animalis_3_1_33_ltp_HMPREF0406_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Fragment library</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002809">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002809</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 3_1_33</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>LR_105_Fusobacterium_Sp</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Pacific Biosciences</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>Standard</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <PACBIO_SMRT>
        <INSTRUMENT_MODEL>PacBio RS</INSTRUMENT_MODEL>
      </PACBIO_SMRT>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
          <STEP_INDEX>2011-07-15 20:18:30.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Instrument Control Version</PROGRAM>
          <VERSION>1.2.1.0.87716</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-07-15 22:52:08.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Primary Analysis</PROGRAM>
          <VERSION>NRT@172.31.128.10:8082, SwVer=1210.87716, HwVer=1.0</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17342.8</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17342.8</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit</TAG>
        <VALUE>DNA/Polymerase Binding Kit 1.0 (24 rxn)</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit_barcode</TAG>
        <VALUE>110125001359802061511</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_template_prep_kit</TAG>
        <VALUE>DNA Template Prep Kit 1.0 (10 ug)</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_template_prep_kit_barcode</TAG>
        <VALUE>110128001322716102811</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G14183</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sequencing_protocol</TAG>
        <VALUE>Standard Sequencing</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>template_preparation_adaptor_sequence</TAG>
        <VALUE>ATCTCTCTCttttcctcctcctccgttgttgttgttGAGAGAGAT</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>template_preparation_kit_insert_size</TAG>
        <VALUE>2707</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>used_binding_kit_control</TAG>
        <VALUE>true</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25680</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX109855" center_name="BI" alias="22812.WR25230.LR_88_Fusobacterium.05262011_10cell.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX109855</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22812.WR25230.LR_88_Fusobacterium.05262011_10cell.S</SUBMITTER_ID>
      <UUID>b421341f-77e4-482f-a2fd-04dfabc72d90</UUID>
    </IDENTIFIERS>
    <TITLE>Whole Genome Sequencing and Assembly</TITLE>
    <STUDY_REF accession="SRP001679">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001679</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32483</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 7_1">Reference genome for the Human Microbiome Project Fusobacterium_nucleatum_subsp_animalis_7_1_ltp_FSDG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Fragment library</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002782">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002782</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16681.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>LR_88_Fusobacterium</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Pacific Biosciences</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>Standard</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <PACBIO_SMRT>
        <INSTRUMENT_MODEL>PacBio RS</INSTRUMENT_MODEL>
      </PACBIO_SMRT>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
          <STEP_INDEX>2011-05-26 19:06:55.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Instrument Control Version</PROGRAM>
          <VERSION>1.2.1.0.87716</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-05-27 02:10:30.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Primary Analysis</PROGRAM>
          <VERSION>NRT@172.31.128.10:8082, SwVer=1210.87716, HwVer=1.0</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16681.9</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16681.9</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit</TAG>
        <VALUE>DNA/Polymerase Binding Kit 1.0 (24 rxn)</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit_barcode</TAG>
        <VALUE>110125001359802061511</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_template_prep_kit</TAG>
        <VALUE>DNA Template Prep Kit 1.0 (10 ug)</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_template_prep_kit_barcode</TAG>
        <VALUE>110128001322716102811</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12690</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sequencing_protocol</TAG>
        <VALUE>Standard Sequencing</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>template_preparation_adaptor_sequence</TAG>
        <VALUE>ATCTCTCTCttttcctcctcctccgttgttgttgttGAGAGAGAT</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>template_preparation_kit_insert_size</TAG>
        <VALUE>2000</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>used_binding_kit_control</TAG>
        <VALUE>true</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25230</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX109856" center_name="BI" alias="22825.WR25232.LR_81_Coprobacillus.06062011_8cell.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX109856</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22825.WR25232.LR_81_Coprobacillus.06062011_8cell.S</SUBMITTER_ID>
      <UUID>a93f5a4c-9be4-485e-b286-d7fe7ec43ad2</UUID>
    </IDENTIFIERS>
    <TITLE>Whole Genome Sequencing and Assembly</TITLE>
    <STUDY_REF accession="SRP001666">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001666</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32461</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Coprobacillus sp. D6">Reference genome for the Human Microbiome Project Coprobacillus_sp_D6_ltp_HMPREF0273_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Fragment library</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002764">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002764</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22682.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>LR_81_Coprobacillus</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Pacific Biosciences</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>Standard</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <PACBIO_SMRT>
        <INSTRUMENT_MODEL>PacBio RS</INSTRUMENT_MODEL>
      </PACBIO_SMRT>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
          <STEP_INDEX>2011-06-06 21:23:43.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Instrument Control Version</PROGRAM>
          <VERSION>1.2.1.0.87716</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-06-07 09:15:10.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Primary Analysis</PROGRAM>
          <VERSION>NRT@172.31.128.10:8082, SwVer=1210.87716, HwVer=1.0</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22682.9</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22682.9</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit</TAG>
        <VALUE>DNA/Polymerase Binding Kit 1.0 (24 rxn)</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit_barcode</TAG>
        <VALUE>110125001359802061511</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_template_prep_kit</TAG>
        <VALUE>DNA Template Prep Kit 1.0 (10 ug)</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_template_prep_kit_barcode</TAG>
        <VALUE>110128001322716102811</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12692</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sequencing_protocol</TAG>
        <VALUE>Standard Sequencing</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>template_preparation_adaptor_sequence</TAG>
        <VALUE>ATCTCTCTCttttcctcctcctccgttgttgttgttGAGAGAGAT</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>template_preparation_kit_insert_size</TAG>
        <VALUE>3000</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>used_binding_kit_control</TAG>
        <VALUE>true</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25232</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX109857" center_name="BI" alias="23039.WR25680.LR_105_Fusobacterium_sp.07082011_8cell.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX109857</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23039.WR25680.LR_105_Fusobacterium_sp.07082011_8cell.S</SUBMITTER_ID>
      <UUID>63fc1360-a859-4235-b624-a6184848378a</UUID>
    </IDENTIFIERS>
    <TITLE>Whole Genome Sequencing and Assembly</TITLE>
    <STUDY_REF accession="SRP001771">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001771</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA38519</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 3_1_33">This strain will be used for comparative genome analysis Fusobacterium_nucleatum_subsp_animalis_3_1_33_ltp_HMPREF0406_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Fragment library</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002809">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002809</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 3_1_33</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>LR_105_Fusobacterium_sp</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Pacific Biosciences</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>Standard</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <PACBIO_SMRT>
        <INSTRUMENT_MODEL>PacBio RS</INSTRUMENT_MODEL>
      </PACBIO_SMRT>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
          <STEP_INDEX>2011-07-08 18:14:55.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Instrument Control Version</PROGRAM>
          <VERSION>1.2.1.0.87716</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-07-09 07:08:30.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Primary Analysis</PROGRAM>
          <VERSION>NRT@172.31.128.10:8082, SwVer=1210.87716, HwVer=1.0</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17342.8</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17342.8</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit</TAG>
        <VALUE>DNA/Polymerase Binding Kit 1.0 (24 rxn)</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit_barcode</TAG>
        <VALUE>110125001359802061511</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_template_prep_kit</TAG>
        <VALUE>DNA Template Prep Kit 1.0 (10 ug)</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_template_prep_kit_barcode</TAG>
        <VALUE>110128001322716102811</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G14183</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sequencing_protocol</TAG>
        <VALUE>Standard Sequencing</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>template_preparation_adaptor_sequence</TAG>
        <VALUE>ATCTCTCTCttttcctcctcctccgttgttgttgttGAGAGAGAT</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>template_preparation_kit_insert_size</TAG>
        <VALUE>2707</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>used_binding_kit_control</TAG>
        <VALUE>true</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25680</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX109858" center_name="BI" alias="22812.WR25230.LR_88_Fusobacterium.05272011_8cell.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX109858</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22812.WR25230.LR_88_Fusobacterium.05272011_8cell.S</SUBMITTER_ID>
      <UUID>292ff532-1027-4aa1-a32b-7ab2510f5c07</UUID>
    </IDENTIFIERS>
    <TITLE>Whole Genome Sequencing and Assembly</TITLE>
    <STUDY_REF accession="SRP001679">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001679</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32483</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 7_1">Reference genome for the Human Microbiome Project Fusobacterium_nucleatum_subsp_animalis_7_1_ltp_FSDG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Fragment library</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002782">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002782</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16681.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>LR_88_Fusobacterium</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Pacific Biosciences</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>Standard</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <PACBIO_SMRT>
        <INSTRUMENT_MODEL>PacBio RS</INSTRUMENT_MODEL>
      </PACBIO_SMRT>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
          <STEP_INDEX>2011-05-27 18:55:59.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Instrument Control Version</PROGRAM>
          <VERSION>1.2.1.0.87716</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-05-27 23:04:36.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Primary Analysis</PROGRAM>
          <VERSION>NRT@172.31.128.10:8082, SwVer=1210.87716, HwVer=1.0</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16681.9</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16681.9</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit</TAG>
        <VALUE>DNA/Polymerase Binding Kit 1.0 (24 rxn)</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit_barcode</TAG>
        <VALUE>110125001359802061511</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_template_prep_kit</TAG>
        <VALUE>DNA Template Prep Kit 1.0 (10 ug)</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_template_prep_kit_barcode</TAG>
        <VALUE>110128001322716102811</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12690</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sequencing_protocol</TAG>
        <VALUE>Standard Sequencing</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>template_preparation_adaptor_sequence</TAG>
        <VALUE>ATCTCTCTCttttcctcctcctccgttgttgttgttGAGAGAGAT</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>template_preparation_kit_insert_size</TAG>
        <VALUE>2000</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>used_binding_kit_control</TAG>
        <VALUE>true</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25230</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX109859</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22812.WR25230.LR_88_Fusobacterium.05312011_8cell.S</SUBMITTER_ID>
      <UUID>22a0785f-dbfe-4acb-b374-c3c480b67c0d</UUID>
    </IDENTIFIERS>
    <TITLE>Whole Genome Sequencing and Assembly</TITLE>
    <STUDY_REF accession="SRP001679">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001679</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32483</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 7_1">Reference genome for the Human Microbiome Project Fusobacterium_nucleatum_subsp_animalis_7_1_ltp_FSDG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Fragment library</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002782">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002782</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16681.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>LR_88_Fusobacterium</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Pacific Biosciences</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>Standard</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <PACBIO_SMRT>
        <INSTRUMENT_MODEL>PacBio RS</INSTRUMENT_MODEL>
      </PACBIO_SMRT>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
          <STEP_INDEX>2011-05-31 22:51:30.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Instrument Control Version</PROGRAM>
          <VERSION>1.2.1.0.87716</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-06-01 00:08:52.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Primary Analysis</PROGRAM>
          <VERSION>NRT@172.31.128.10:8082, SwVer=1210.87716, HwVer=1.0</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16681.9</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16681.9</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit</TAG>
        <VALUE>DNA/Polymerase Binding Kit 1.0 (24 rxn)</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit_barcode</TAG>
        <VALUE>110125001359802061511</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_template_prep_kit</TAG>
        <VALUE>DNA Template Prep Kit 1.0 (10 ug)</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_template_prep_kit_barcode</TAG>
        <VALUE>110128001322716102811</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12690</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sequencing_protocol</TAG>
        <VALUE>Standard Sequencing</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>template_preparation_adaptor_sequence</TAG>
        <VALUE>ATCTCTCTCttttcctcctcctccgttgttgttgttGAGAGAGAT</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>template_preparation_kit_insert_size</TAG>
        <VALUE>2000</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>used_binding_kit_control</TAG>
        <VALUE>true</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25230</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX109860</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22825.WR25232.LR_81_Coprobacillus_1.05nM.05192011_8cell.S</SUBMITTER_ID>
      <UUID>49b93d50-bc56-4cb1-ab60-f9673c691a55</UUID>
    </IDENTIFIERS>
    <TITLE>Whole Genome Sequencing and Assembly</TITLE>
    <STUDY_REF accession="SRP001666">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001666</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32461</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Coprobacillus sp. D6">Reference genome for the Human Microbiome Project Coprobacillus_sp_D6_ltp_HMPREF0273_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Fragment library</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002764">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002764</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22682.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>LR_81_Coprobacillus_1.05nM</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Pacific Biosciences</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>Standard</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <PACBIO_SMRT>
        <INSTRUMENT_MODEL>PacBio RS</INSTRUMENT_MODEL>
      </PACBIO_SMRT>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
          <STEP_INDEX>2011-05-19 18:55:10.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Instrument Control Version</PROGRAM>
          <VERSION>1.2.1.0.87716</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-05-19 18:12:05.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Primary Analysis</PROGRAM>
          <VERSION>NRT@172.31.128.10:8082, SwVer=1210.87716, HwVer=1.0</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22682.9</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22682.9</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit</TAG>
        <VALUE>DNA/Polymerase Binding Kit 1.0 (24 rxn)</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit_barcode</TAG>
        <VALUE>110125001359802061511</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_template_prep_kit</TAG>
        <VALUE>DNA Template Prep Kit 1.0 (10 ug)</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_template_prep_kit_barcode</TAG>
        <VALUE>110128001322716102811</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12692</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sequencing_protocol</TAG>
        <VALUE>Standard Sequencing</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>template_preparation_adaptor_sequence</TAG>
        <VALUE>ATCTCTCTCttttcctcctcctccgttgttgttgttGAGAGAGAT</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>template_preparation_kit_insert_size</TAG>
        <VALUE>2000</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>used_binding_kit_control</TAG>
        <VALUE>true</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25232</VALUE>
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    </EXPERIMENT_ATTRIBUTES>
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      <PRIMARY_ID>SRX109861</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22825.WR25232.LR_81_Coprobacillus_0.9nM_loading.05132011_12cell.S</SUBMITTER_ID>
      <UUID>2d2febc4-2441-48e7-9fa1-450a7fb8a628</UUID>
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    <TITLE>Whole Genome Sequencing and Assembly</TITLE>
    <STUDY_REF accession="SRP001666">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001666</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32461</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Coprobacillus sp. D6">Reference genome for the Human Microbiome Project Coprobacillus_sp_D6_ltp_HMPREF0273_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Fragment library</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
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          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22682.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>LR_81_Coprobacillus_0.9nM_loading</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Pacific Biosciences</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>Standard</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
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            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <PACBIO_SMRT>
        <INSTRUMENT_MODEL>PacBio RS</INSTRUMENT_MODEL>
      </PACBIO_SMRT>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
          <STEP_INDEX>2011-05-13 19:04:57.0</STEP_INDEX>
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        </PIPE_SECTION>
        <PIPE_SECTION section_name="base caller">
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          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Primary Analysis</PROGRAM>
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        <VALUE>BROAD:SEQUENCING_SAMPLE:22682.9</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>DNA Template Prep Kit 1.0 (10 ug)</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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      <PRIMARY_ID>SRX109862</PRIMARY_ID>
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    <TITLE>Whole Genome Sequencing and Assembly</TITLE>
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        <EXTERNAL_ID namespace="bioproject">PRJNA30055</EXTERNAL_ID>
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    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Fragment library</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002749">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002749</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Bifidobacterium bifidum NCIMB 41171</SUBMITTER_ID>
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      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>LR_84_Bbifidum</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Pacific Biosciences</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
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            <READ_INDEX>0</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
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      </SPOT_DESCRIPTOR>
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    <PLATFORM>
      <PACBIO_SMRT>
        <INSTRUMENT_MODEL>PacBio RS</INSTRUMENT_MODEL>
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      <PIPELINE>
        <PIPE_SECTION>
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        <PIPE_SECTION section_name="base caller">
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          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
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      </PIPELINE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit_barcode</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_template_prep_kit</TAG>
        <VALUE>DNA Template Prep Kit 1.0 (10 ug)</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Standard Sequencing</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>template_preparation_adaptor_sequence</TAG>
        <VALUE>ATCTCTCTCttttcctcctcctccgttgttgttgttGAGAGAGAT</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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        <EXTERNAL_ID namespace="bioproject">PRJNA32461</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Coprobacillus sp. D6">Reference genome for the Human Microbiome Project Coprobacillus_sp_D6_ltp_HMPREF0273_WGS_Monoisolate</EXTERNAL_ID>
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    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Fragment library</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002764">
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          <PRIMARY_ID>SRS002764</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22682.0</SUBMITTER_ID>
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      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>LR_113_Coprobacilus</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Pacific Biosciences</LIBRARY_CONSTRUCTION_PROTOCOL>
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        <PIPE_SECTION>
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      <EXPERIMENT_ATTRIBUTE>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit_barcode</TAG>
        <VALUE>110125001359802061511</VALUE>
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        <TAG>pacbio_rs_template_prep_kit</TAG>
        <VALUE>DNA Template Prep Kit 1.0 (10 ug)</VALUE>
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        <VALUE>Standard Sequencing</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>ATCTCTCTCttttcctcctcctccgttgttgttgttGAGAGAGAT</VALUE>
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        <EXTERNAL_ID namespace="bioproject">PRJNA32461</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Coprobacillus sp. D6">Reference genome for the Human Microbiome Project Coprobacillus_sp_D6_ltp_HMPREF0273_WGS_Monoisolate</EXTERNAL_ID>
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    </STUDY_REF>
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      <DESIGN_DESCRIPTION>Fragment library</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002764">
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          <PRIMARY_ID>SRS002764</PRIMARY_ID>
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      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>LR_81_Coprobacillus_1.75nM_loading</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Pacific Biosciences</LIBRARY_CONSTRUCTION_PROTOCOL>
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      <PACBIO_SMRT>
        <INSTRUMENT_MODEL>PacBio RS</INSTRUMENT_MODEL>
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        <PIPE_SECTION>
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          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Primary Analysis</PROGRAM>
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        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit_barcode</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>template_preparation_adaptor_sequence</TAG>
        <VALUE>ATCTCTCTCttttcctcctcctccgttgttgttgttGAGAGAGAT</VALUE>
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    </STUDY_REF>
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      <DESIGN_DESCRIPTION>Fragment library</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002764">
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        <LIBRARY_NAME>LR_81_Coprobacillus_1.2nM_loading</LIBRARY_NAME>
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      <PIPELINE>
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          <PROGRAM>Instrument Control Version</PROGRAM>
          <VERSION>1.2.1.0.87716</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-05-14 05:56:16.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Primary Analysis</PROGRAM>
          <VERSION>NRT@172.31.128.10:8082, SwVer=1210.87716, HwVer=1.0</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22682.9</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22682.9</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit</TAG>
        <VALUE>DNA/Polymerase Binding Kit 1.0 (24 rxn)</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit_barcode</TAG>
        <VALUE>110125001359802061511</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_template_prep_kit</TAG>
        <VALUE>DNA Template Prep Kit 1.0 (10 ug)</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_template_prep_kit_barcode</TAG>
        <VALUE>110128001322716102811</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12692</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sequencing_protocol</TAG>
        <VALUE>Standard Sequencing</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>template_preparation_adaptor_sequence</TAG>
        <VALUE>ATCTCTCTCttttcctcctcctccgttgttgttgttGAGAGAGAT</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>template_preparation_kit_insert_size</TAG>
        <VALUE>2000</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>used_binding_kit_control</TAG>
        <VALUE>true</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25232</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX109866" center_name="BI" alias="22812.WR25230.LR_88_Fusobacterium.06032011_8cell.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX109866</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22812.WR25230.LR_88_Fusobacterium.06032011_8cell.S</SUBMITTER_ID>
      <UUID>c81fe956-1be7-4eda-8c6f-25ae79516972</UUID>
    </IDENTIFIERS>
    <TITLE>Whole Genome Sequencing and Assembly</TITLE>
    <STUDY_REF accession="SRP001679">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001679</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32483</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 7_1">Reference genome for the Human Microbiome Project Fusobacterium_nucleatum_subsp_animalis_7_1_ltp_FSDG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Fragment library</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002782">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002782</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16681.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>LR_88_Fusobacterium</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Pacific Biosciences</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>Standard</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <PACBIO_SMRT>
        <INSTRUMENT_MODEL>PacBio RS</INSTRUMENT_MODEL>
      </PACBIO_SMRT>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
          <STEP_INDEX>2011-06-03 20:29:23.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Instrument Control Version</PROGRAM>
          <VERSION>1.2.1.0.87716</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-06-04 03:22:50.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Primary Analysis</PROGRAM>
          <VERSION>NRT@172.31.128.10:8082, SwVer=1210.87716, HwVer=1.0</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16681.9</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16681.9</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit</TAG>
        <VALUE>DNA/Polymerase Binding Kit 1.0 (24 rxn)</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit_barcode</TAG>
        <VALUE>110125001359802061511</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_template_prep_kit</TAG>
        <VALUE>DNA Template Prep Kit 1.0 (10 ug)</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_template_prep_kit_barcode</TAG>
        <VALUE>110128001322716102811</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12690</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sequencing_protocol</TAG>
        <VALUE>Standard Sequencing</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>template_preparation_adaptor_sequence</TAG>
        <VALUE>ATCTCTCTCttttcctcctcctccgttgttgttgttGAGAGAGAT</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>template_preparation_kit_insert_size</TAG>
        <VALUE>2000</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>used_binding_kit_control</TAG>
        <VALUE>true</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25230</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX109867" center_name="BI" alias="22812.WR25230.LR_88_Fusobacterium.06012011_8cell.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX109867</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22812.WR25230.LR_88_Fusobacterium.06012011_8cell.S</SUBMITTER_ID>
      <UUID>4a2660df-142b-470e-9e55-b50e6ed5f2fa</UUID>
    </IDENTIFIERS>
    <TITLE>Whole Genome Sequencing and Assembly</TITLE>
    <STUDY_REF accession="SRP001679">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001679</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32483</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 7_1">Reference genome for the Human Microbiome Project Fusobacterium_nucleatum_subsp_animalis_7_1_ltp_FSDG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Fragment library</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002782">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002782</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16681.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>LR_88_Fusobacterium</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Pacific Biosciences</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>Standard</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <PACBIO_SMRT>
        <INSTRUMENT_MODEL>PacBio RS</INSTRUMENT_MODEL>
      </PACBIO_SMRT>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
          <STEP_INDEX>2011-06-02 00:52:44.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Instrument Control Version</PROGRAM>
          <VERSION>1.2.1.0.87716</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-06-02 10:13:23.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Primary Analysis</PROGRAM>
          <VERSION>NRT@172.31.128.10:8082, SwVer=1210.87716, HwVer=1.0</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16681.9</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16681.9</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit</TAG>
        <VALUE>DNA/Polymerase Binding Kit 1.0 (24 rxn)</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit_barcode</TAG>
        <VALUE>110125001359802061511</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_template_prep_kit</TAG>
        <VALUE>DNA Template Prep Kit 1.0 (10 ug)</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_template_prep_kit_barcode</TAG>
        <VALUE>110128001322716102811</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12690</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sequencing_protocol</TAG>
        <VALUE>Standard Sequencing</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>template_preparation_adaptor_sequence</TAG>
        <VALUE>ATCTCTCTCttttcctcctcctccgttgttgttgttGAGAGAGAT</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>template_preparation_kit_insert_size</TAG>
        <VALUE>2000</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>used_binding_kit_control</TAG>
        <VALUE>true</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25230</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX110629" center_name="BI" alias="22812.WR24989.Solexa-62891.B08YJABXX110505.tagged_422.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX110629</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22812.WR24989.Solexa-62891.B08YJABXX110505.tagged_422.P</SUBMITTER_ID>
      <UUID>b28ba264-429f-4cfd-9edf-ce6e7c412287</UUID>
    </IDENTIFIERS>
    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-62891' containing sample 'BROAD:SEQUENCING_SAMPLE:16681.0'</TITLE>
    <STUDY_REF accession="SRP001679">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001679</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32483</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 7_1">Reference genome for the Human Microbiome Project Fusobacterium_nucleatum_subsp_animalis_7_1_ltp_FSDG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>low coverage of genome on Illumina</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002782">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002782</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:16681.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-62891</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="483" NOMINAL_SDEV="217.8683"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>210</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="102">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">CCTACCAT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>110</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-08-04 17:08:41.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.10.36</VERSION>
          <NOTES>Sequencer Application 1.3.8</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16681.7</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16681.7</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12590</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>24989</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX111030" center_name="BI" alias="23039.WR26384.Solexa-73516.D0ENAACXX111117.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX111030</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23039.WR26384.Solexa-73516.D0ENAACXX111117.P</SUBMITTER_ID>
      <UUID>a13da123-de20-4432-b384-c220278c3e9b</UUID>
    </IDENTIFIERS>
    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-73516' containing sample 'Fusobacterium sp. 3_1_33'</TITLE>
    <STUDY_REF accession="SRP001771">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001771</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA38519</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 3_1_33">This strain will be used for comparative genome analysis Fusobacterium_nucleatum_subsp_animalis_3_1_33_ltp_HMPREF0406_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>3-5kb jumps on Illumina</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002809">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002809</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 3_1_33</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-73516</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="486" NOMINAL_SDEV="115.24515"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-11-28 23:49:04.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.12.4.2</VERSION>
          <NOTES>Sequencer Application 1.4.8</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>17342.10</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17342.10</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G14063</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>26384</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX115839" center_name="BI" alias="22789.WR26384.Solexa-73510.D0ENAACXX111117.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX115839</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22789.WR26384.Solexa-73510.D0ENAACXX111117.P</SUBMITTER_ID>
      <UUID>7501226a-3f88-4343-b1b4-b54471a69180</UUID>
    </IDENTIFIERS>
    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-73510' containing sample 'Fusobacterium sp. 2_1_31'</TITLE>
    <STUDY_REF accession="SRP001671">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001671</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32473</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium periodonticum 2_1_31">Reference genome for the Human Microbiome Project Fusobacterium_periodonticum_2_1_31_ltp_FSAG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>3-5kb jumps on Illumina</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002773">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002773</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 2_1_31</SUBMITTER_ID>
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      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-73510</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="592" NOMINAL_SDEV="191.528423333333"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-11-28 23:49:04.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
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      </PIPELINE>
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    <EXPERIMENT_ATTRIBUTES>
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        <VALUE>17338.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>BROAD:SEQUENCING_SAMPLE:17338.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>26384</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX115840" center_name="BI" alias="22795.WR26384.Solexa-73505.D0ENAACXX111117.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX115840</PRIMARY_ID>
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      <UUID>becbe838-9ce7-4257-9ae9-8c54c90a2a30</UUID>
    </IDENTIFIERS>
    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-73505' containing sample 'Fusobacterium sp. 12_1B'</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001624</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32471</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium ulcerans 12-1B">Reference genome for the Human Microbiome Project Fusobacterium_ulcerans_12_1B_12_1B_ltp_HMPREF0402_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
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      <SAMPLE_DESCRIPTOR accession="SRS107454">
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          <PRIMARY_ID>SRS107454</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 12_1B</SUBMITTER_ID>
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      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-73505</LIBRARY_NAME>
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        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="598" NOMINAL_SDEV="279.14663"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
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            <READ_CLASS>Application Read</READ_CLASS>
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            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
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          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-11-28 23:49:04.0</STEP_INDEX>
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          <PROGRAM>GAPipeline</PROGRAM>
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      </PIPELINE>
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    <EXPERIMENT_ATTRIBUTES>
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        <VALUE>39753.5</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>26384</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
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      <PRIMARY_ID>SRX115841</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23037.WR26384.Solexa-73504.D0ENAACXX111117.P</SUBMITTER_ID>
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    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-73504' containing sample 'Fusobacterium sp. 11_3_2'</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001776</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA39559</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 11_3_2">Reference genome for Human Microbiome Project Fusobacterium_nucleatum_subsp_animalis_11_3_2_ltp_HMPREF0401_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>3-5kb jumps on Illumina</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002800">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002800</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 11_3_2</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-73504</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="603" NOMINAL_SDEV="218.286226666667"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-11-28 23:49:04.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
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          <NOTES>Sequencer Application 1.4.8</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>16679.5</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:16679.5</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G14062</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>26384</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX115971" center_name="BI" alias="22795.WR25825.Pond-75839.B028JACXX110725.tagged_498.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX115971</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22795.WR25825.Pond-75839.B028JACXX110725.tagged_498.P</SUBMITTER_ID>
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    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-75839' containing sample 'Fusobacterium sp. 12_1B'</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001624</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32471</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium ulcerans 12-1B">Reference genome for the Human Microbiome Project Fusobacterium_ulcerans_12_1B_12_1B_ltp_HMPREF0402_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Fusobacterium ulcerans 12-1B via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS107454">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS107454</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 12_1B</SUBMITTER_ID>
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      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Pond-75839</LIBRARY_NAME>
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        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="310" NOMINAL_SDEV="12.00323"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>210</SPOT_LENGTH>
          <READ_SPEC>
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            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="102">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">CGTTACCA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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          <PROGRAM>GAPipeline</PROGRAM>
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        </PIPE_SECTION>
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    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:39753.4</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G14065</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25825</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX115972" center_name="BI" alias="22789.WR25825.Pond-75857.B028JACXX110725.tagged_866.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX115972</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22789.WR25825.Pond-75857.B028JACXX110725.tagged_866.P</SUBMITTER_ID>
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    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-75857' containing sample 'Fusobacterium sp. 2_1_31'</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP001671</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32473</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium periodonticum 2_1_31">Reference genome for the Human Microbiome Project Fusobacterium_periodonticum_2_1_31_ltp_FSAG_WGS_Monoisolate</EXTERNAL_ID>
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    </STUDY_REF>
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      <DESIGN_DESCRIPTION>Illumina sequencing of Fusobacterium periodonticum 2_1_31 via random selection</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS002773</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 2_1_31</SUBMITTER_ID>
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      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Pond-75857</LIBRARY_NAME>
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        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
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          <PAIRED NOMINAL_LENGTH="310" NOMINAL_SDEV="13.6154"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
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            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="102">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">TCGCCTTG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:17338.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25825</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
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      <PRIMARY_ID>SRX115973</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">23037.WR25825.Pond-75853.B028JACXX110725.tagged_426.P</SUBMITTER_ID>
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    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-75853' containing sample 'Fusobacterium sp. 11_3_2'</TITLE>
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          <SUBMITTER_ID namespace="BI">PRJNA28331.Fusobacterium sp. 11_3_2</SUBMITTER_ID>
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        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
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          <PAIRED NOMINAL_LENGTH="310" NOMINAL_SDEV="14.47073"/>
        </LIBRARY_LAYOUT>
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      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>210</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="102">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">CCTATGCC</BASECALL>
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      <EXPERIMENT_ATTRIBUTE>
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        <EXTERNAL_ID namespace="Broad Institute" label="Bifidobacterium bifidum NCIMB 41171">Reference genome for the Human Microbiome Project Bifidobacterium_bifidum_NCIMB_41171_ltp_BBNG_WGS_Monoisolate</EXTERNAL_ID>
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        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 3_1_33">This strain will be used for comparative genome analysis Fusobacterium_nucleatum_subsp_animalis_3_1_33_ltp_HMPREF0406_WGS_Monoisolate</EXTERNAL_ID>
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            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
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          <READ_SPEC>
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            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
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        <VALUE>22737</VALUE>
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          <READ_SPEC>
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        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-12-07 19:32:34.0</STEP_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>22737</VALUE>
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        <EXTERNAL_ID namespace="Broad Institute" label="Fusobacterium nucleatum subsp. animalis 3_1_33">This strain will be used for comparative genome analysis Fusobacterium_nucleatum_subsp_animalis_3_1_33_ltp_HMPREF0406_WGS_Monoisolate</EXTERNAL_ID>
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    </STUDY_REF>
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          <READ_SPEC>
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            <READ_LABEL>barcode</READ_LABEL>
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            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="94">
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          <READ_SPEC>
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            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
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      <EXPERIMENT_ATTRIBUTE>
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      <LIBRARY_DESCRIPTOR>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="102">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">TGCTCGAC</BASECALL>
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          <READ_SPEC>
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            <READ_LABEL>reverse</READ_LABEL>
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    <PROCESSING>
      <PIPELINE>
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    <EXPERIMENT_ATTRIBUTES>
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      <EXPERIMENT_ATTRIBUTE>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>24959</VALUE>
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    </EXPERIMENT_ATTRIBUTES>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX117502</PRIMARY_ID>
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    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA library 'Pond-52458' containing sample 'Bifidobacterium bifidum NCIMB 41171'</TITLE>
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          <SUBMITTER_ID namespace="BI">PRJNA28331.Bifidobacterium bifidum NCIMB 41171</SUBMITTER_ID>
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      <LIBRARY_DESCRIPTOR>
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        <LIBRARY_LAYOUT>
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      <SPOT_DESCRIPTOR>
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          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="102">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">CCAGTTAG</BASECALL>
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          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      </PIPELINE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:14161.18</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G6447</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>24362</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
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  <EXPERIMENT accession="SRX118016" center_name="BI" alias="22754.WR19756.Solexa-14239.42HBBAAXX090910.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX118016</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22754.WR19756.Solexa-14239.42HBBAAXX090910.P</SUBMITTER_ID>
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    <TITLE>Illumina jumping library sequencing of Bifidobacterium bifidum NCIMB 41171</TITLE>
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        <EXTERNAL_ID namespace="bioproject">PRJNA30055</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bifidobacterium bifidum NCIMB 41171">Reference genome for the Human Microbiome Project Bifidobacterium_bifidum_NCIMB_41171_ltp_BBNG_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>4kb Jumping Library</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002749">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002749</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Bifidobacterium bifidum NCIMB 41171</SUBMITTER_ID>
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          <PAIRED NOMINAL_LENGTH="250" NOMINAL_SDEV="69.01929"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
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          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
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        </PIPE_SECTION>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-09-20 23:41:42.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
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        </PIPE_SECTION>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>19756</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
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    <IDENTIFIERS>
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      <DESIGN_DESCRIPTION>Illumina sequencing of Bifidobacterium bifidum NCIMB 41171 via random selection</DESIGN_DESCRIPTION>
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          <PAIRED NOMINAL_LENGTH="180" NOMINAL_SDEV="14.80352"/>
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        <LIBRARY_CONSTRUCTION_PROTOCOL>180bp Paired End Library</LIBRARY_CONSTRUCTION_PROTOCOL>
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          <READ_SPEC>
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          <READ_SPEC>
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            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-13979</LIBRARY_NAME>
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        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="180" NOMINAL_SDEV="14.80352"/>
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        <LIBRARY_CONSTRUCTION_PROTOCOL>180bp Paired End Library</LIBRARY_CONSTRUCTION_PROTOCOL>
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      <SPOT_DESCRIPTOR>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
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      </SPOT_DESCRIPTOR>
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        <VALUE>ATCTCTCTCttttcctcctcctccgttgttgttgttGAGAGAGAT</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>template_preparation_kit_insert_size</TAG>
        <VALUE>6000</VALUE>
      </EXPERIMENT_ATTRIBUTE>
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        <TAG>used_binding_kit_control</TAG>
        <VALUE>false</VALUE>
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        <TAG>work_request</TAG>
        <VALUE>29265</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX131408" center_name="BI" alias="22825.WR29265.PACBIO-50.03182012_8cell_1.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX131408</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">22825.WR29265.PACBIO-50.03182012_8cell_1.S</SUBMITTER_ID>
      <UUID>a01416a9-6d86-40dc-82fd-46586d1c7dff</UUID>
    </IDENTIFIERS>
    <TITLE>Whole Genome Sequencing and Assembly</TITLE>
    <STUDY_REF accession="SRP001666">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001666</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA32461</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Coprobacillus sp. D6">Reference genome for the Human Microbiome Project Coprobacillus_sp_D6_ltp_HMPREF0273_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Fragment library</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS002764">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS002764</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:22682.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>PACBIO-50</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Pacific Biosciences</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>Standard</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <PACBIO_SMRT>
        <INSTRUMENT_MODEL>PacBio RS</INSTRUMENT_MODEL>
      </PACBIO_SMRT>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
          <STEP_INDEX>2012-03-18 16:56:51.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
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          <VERSION>1.3.0.50.104380</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2012-03-18 19:21:28.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Primary Analysis</PROGRAM>
          <VERSION>NRT@172.31.128.10:8082, SwVer=13050.104380, HwVer=1.0</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>22682.11</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:22682.11</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit</TAG>
        <VALUE>DNA/Polymerase Binding Kit 2.0 (24 Rxn)</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_binding_kit_barcode</TAG>
        <VALUE>120126001672551071712</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_template_prep_kit</TAG>
        <VALUE>DNA Template Prep Kit 2.0 (3Kb - 10Kb)</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>pacbio_rs_template_prep_kit_barcode</TAG>
        <VALUE>110170001540835072512</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>D2397</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>sequencing_protocol</TAG>
        <VALUE>Standard Sequencing</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>template_preparation_adaptor_sequence</TAG>
        <VALUE>ATCTCTCTCttttcctcctcctccgttgttgttgttGAGAGAGAT</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>template_preparation_kit_insert_size</TAG>
        <VALUE>6000</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>used_binding_kit_control</TAG>
        <VALUE>false</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>29265</VALUE>
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    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
</EXPERIMENT_SET>
