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<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="Bacterial community" center_name="University of Waterloo" accession="SRX027105">
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      <PRIMARY_ID>SRX027105</PRIMARY_ID>
      <SUBMITTER_ID namespace="University of Waterloo">Bacterial community</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Bacterial soil community 1</TITLE>
    <STUDY_REF accession="SRP003568">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP003568</PRIMARY_ID>
        <SUBMITTER_ID namespace="University of Waterloo">Arctic tundra</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>PCR was carried out using genomic DNA as template with modified 16S rRNA primers (which, in addition to targeting the bacterial 16S rRNA gene, also contain regions specific to Illumina paired-end sequencing primers and contain regions necessary to bind to the Illumina flow cell).  Following this PCR products of the correct size were recovered using the QIAquick gel extraction kit (Qiagen. USA).</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS115045</PRIMARY_ID>
          <SUBMITTER_ID namespace="University of Waterloo">Bacterial community</SUBMITTER_ID>
        </IDENTIFIERS>
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      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>AT1</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <PAIRED NOMINAL_LENGTH="200"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
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            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>126</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
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  </EXPERIMENT>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX027106</PRIMARY_ID>
      <SUBMITTER_ID namespace="University of Waterloo">Bacterial community (control 1)</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Artificial bacterial community (control library 1)</TITLE>
    <STUDY_REF accession="SRP003568">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP003568</PRIMARY_ID>
        <SUBMITTER_ID namespace="University of Waterloo">Arctic tundra</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>PCR was carried out using genomic DNA as template with modified 16S rRNA primers (which, in addition to targeting the bacterial 16S rRNA gene, also contain regions specific to Illumina paired-end sequencing primers and contain regions necessary to bind to the Illumina flow cell).  Following this PCR products of the correct size were recovered using the QIAquick gel extraction kit (Qiagen. USA).</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS115045</PRIMARY_ID>
          <SUBMITTER_ID namespace="University of Waterloo">Bacterial community</SUBMITTER_ID>
        </IDENTIFIERS>
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        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <PAIRED NOMINAL_LENGTH="200"/>
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            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>126</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
  <EXPERIMENT alias="Bacterial community (alert 2)" center_name="University of Waterloo" accession="SRX027988">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX027988</PRIMARY_ID>
      <SUBMITTER_ID namespace="University of Waterloo">Bacterial community (alert 2)</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Bacterial soil community 2</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP003568</PRIMARY_ID>
        <SUBMITTER_ID namespace="University of Waterloo">Arctic tundra</SUBMITTER_ID>
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    <DESIGN>
      <DESIGN_DESCRIPTION>PCR was carried out using genomic DNA as template with modified 16S rRNA primers (which, in addition to targeting the bacterial 16S rRNA gene, also contain regions specific to Illumina paired-end sequencing primers and contain regions necessary to bind to the Illumina flow cell).  Following this PCR products of the correct size were recovered using the QIAquick gel extraction kit (Qiagen. USA).</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS115045</PRIMARY_ID>
          <SUBMITTER_ID namespace="University of Waterloo">Bacterial community</SUBMITTER_ID>
        </IDENTIFIERS>
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        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="200"/>
        </LIBRARY_LAYOUT>
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        <SPOT_DECODE_SPEC>
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            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>126</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL>
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    <PROCESSING/>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX027989</PRIMARY_ID>
      <SUBMITTER_ID namespace="University of Waterloo">Bacterial community (control 2)</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Artificial bacterial community (control library 2)</TITLE>
    <STUDY_REF accession="SRP003568">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP003568</PRIMARY_ID>
        <SUBMITTER_ID namespace="University of Waterloo">Arctic tundra</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>PCR was carried out using genomic DNA as template with modified 16S rRNA primers (which, in addition to targeting the bacterial 16S rRNA gene, also contain regions specific to Illumina paired-end sequencing primers and contain regions necessary to bind to the Illumina flow cell).  Following this PCR products of the correct size were recovered using the QIAquick gel extraction kit (Qiagen. USA).</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS115045</PRIMARY_ID>
          <SUBMITTER_ID namespace="University of Waterloo">Bacterial community</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>C2</LIBRARY_NAME>
        <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="200"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>126</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
</EXPERIMENT_SET>
