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        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_SDEV="47.9799166666667" NOMINAL_LENGTH="200"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>144</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_117">ACCAACTG</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_190">AGCAATTC</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_236">AGTTGCTT</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_289">ATTATGTT</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_332">CACATCCT</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_34">AACTTGAC</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_357">CAGGAGCC</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_367">CATAGCGA</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_375">CATGCTTA</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_393">CCAGTTAG</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_422">CCTACCAT</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_504">CTACCAGG</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_52">AAGGATGT</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_629">GCACACGA</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_630">GCACATCT</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_726">GGTCCAGA</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_741">GTATAACA</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_800">TACTTAGC</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_869">TCGGAATG</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_880">TCTGGCGA</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_908">TGCTCGAC</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_927">TGTCGGAT</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_954">TTCGCTGA</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_960">TTGAGCCT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>77</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>BI Project Names</TAG>
        <VALUE>G4661, G4662, G4663, G4665, G4666, G4667, G4670, G4672, G4675, G4681, G4684, G4688, G4689, G4692, G4693, G4695, G4704, G4705, G4706, G4711, G4713, G4715, G4716, G4717</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>BI GSSR Sample IDs</TAG>
        <VALUE>58385.2, 58386.2, 58387.2, 58389.2, 58390.4, 58391.3, 58394.2, 58396.3, 58399.2, 58405.2, 58408.2, 58412.3, 58413.4, 58416.3, 58417.2, 58419.2, 58428.2, 58429.2, 58430.2, 58435.2, 58437.2, 58439.2, 58440.2, 58441.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>BI Work Request ID</TAG>
        <VALUE>23210</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT center_name="BI" alias="82866.WR23211.Solexa-38750.624THAAXX100806.4.P" accession="SRX027577">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX027577</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">82866.WR23211.Solexa-38750.624THAAXX100806.4.P</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Genome Sequencing of Mycobacterium tuberculosis PGG1</TITLE>
    <STUDY_REF accession="SRP003679" refcenter="BI" refname="Mycobacterium_tuberculosis_PGG1_multi_isolate_project_70_or_more_MTB_strains"/>
    <DESIGN>
      <DESIGN_DESCRIPTION>indexed, pooled deep sequencing on Illumina</DESIGN_DESCRIPTION>
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        <POOL>
          <MEMBER refcenter="BI" refname="58383.0" proportion="0.04347826" member_name="tagged_214_AGGATCTA" accession="SRS116431">
            <READ_LABEL read_group_tag="tagged_214">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER refcenter="BI" refname="58402.0" proportion="0.04347826" member_name="tagged_223_AGGTTATC" accession="SRS116418">
            <READ_LABEL read_group_tag="tagged_223">barcode</READ_LABEL>
          </MEMBER>
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            <READ_LABEL read_group_tag="tagged_250">barcode</READ_LABEL>
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            <READ_LABEL read_group_tag="tagged_388">barcode</READ_LABEL>
          </MEMBER>
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            <READ_LABEL read_group_tag="tagged_38">barcode</READ_LABEL>
          </MEMBER>
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            <READ_LABEL read_group_tag="tagged_426">barcode</READ_LABEL>
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            <READ_LABEL read_group_tag="tagged_438">barcode</READ_LABEL>
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            <READ_LABEL read_group_tag="tagged_559">barcode</READ_LABEL>
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            <READ_LABEL read_group_tag="tagged_754">barcode</READ_LABEL>
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            <READ_LABEL read_group_tag="tagged_786">barcode</READ_LABEL>
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            <READ_LABEL read_group_tag="tagged_861">barcode</READ_LABEL>
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            <READ_LABEL read_group_tag="tagged_866">barcode</READ_LABEL>
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            <READ_LABEL read_group_tag="tagged_875">barcode</READ_LABEL>
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            <READ_LABEL read_group_tag="tagged_938">barcode</READ_LABEL>
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            <READ_LABEL read_group_tag="tagged_959">barcode</READ_LABEL>
          </MEMBER>
        </POOL>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-38750</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_SDEV="48.2360434782609" NOMINAL_LENGTH="200"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>144</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_214">AGGATCTA</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_223">AGGTTATC</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_250">ATAGCGTC</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_293">ATTCTAGG</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_352">CAGCAAGG</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_388">CCAGAGCT</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_38">AAGACACT</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_426">CCTATGCC</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_438">CCTTCGCA</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_498">CGTTACCA</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_559">GAACCTAG</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_564">GAAGAAGT</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_579">GACAGTAA</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_745">GTCATCTA</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_752">GTCGCCTT</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_754">GTCTGATG</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_786">TAATGAAC</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_851">TCCAGCAA</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_861">TCCTTGGT</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_866">TCGCCTTG</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_875">TCTCGGTC</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_938">TTACGCAC</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_959">TTGAATAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>77</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>BI Project Names</TAG>
        <VALUE>G4659, G4660, G4664, G4668, G4669, G4678, G4679, G4680, G4685, G4686, G4690, G4691, G4694, G4696, G4698, G4702, G4712, G4719, G4720, G4722, G4723, G4727, G4728</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>BI GSSR Sample IDs</TAG>
        <VALUE>58383.2, 58384.2, 58388.2, 58392.2, 58393.2, 58402.2, 58403.2, 58404.2, 58409.2, 58410.2, 58414.2, 58415.2, 58418.2, 58420.2, 58422.2, 58426.2, 58436.2, 58443.2, 58444.2, 58446.2, 58447.2, 58451.2, 58452.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>BI Work Request ID</TAG>
        <VALUE>23211</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT center_name="BI" alias="82866.WR23211.Solexa-38750.624THAAXX100806.5.P" accession="SRX027578">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX027578</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">82866.WR23211.Solexa-38750.624THAAXX100806.5.P</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Genome Sequencing of Mycobacterium tuberculosis PGG1</TITLE>
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    <DESIGN>
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            <READ_LABEL read_group_tag="tagged_214">barcode</READ_LABEL>
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            <READ_LABEL read_group_tag="tagged_388">barcode</READ_LABEL>
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            <READ_LABEL read_group_tag="tagged_38">barcode</READ_LABEL>
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            <READ_LABEL read_group_tag="tagged_559">barcode</READ_LABEL>
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            <READ_LABEL read_group_tag="tagged_861">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER refcenter="BI" refname="58404.0" proportion="0.04347826" member_name="tagged_866_TCGCCTTG" accession="SRS116443">
            <READ_LABEL read_group_tag="tagged_866">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER refcenter="BI" refname="58447.0" proportion="0.04347826" member_name="tagged_875_TCTCGGTC" accession="SRS116445">
            <READ_LABEL read_group_tag="tagged_875">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER refcenter="BI" refname="58384.0" proportion="0.04347826" member_name="tagged_938_TTACGCAC" accession="SRS116448">
            <READ_LABEL read_group_tag="tagged_938">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER refcenter="BI" refname="58409.0" proportion="0.04347826" member_name="tagged_959_TTGAATAG" accession="SRS116416">
            <READ_LABEL read_group_tag="tagged_959">barcode</READ_LABEL>
          </MEMBER>
        </POOL>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-38750</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_SDEV="48.501347826087" NOMINAL_LENGTH="200"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>144</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_214">AGGATCTA</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_223">AGGTTATC</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_250">ATAGCGTC</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_293">ATTCTAGG</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_352">CAGCAAGG</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_388">CCAGAGCT</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_38">AAGACACT</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_426">CCTATGCC</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_438">CCTTCGCA</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_498">CGTTACCA</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_559">GAACCTAG</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_564">GAAGAAGT</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_579">GACAGTAA</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_745">GTCATCTA</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_752">GTCGCCTT</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_754">GTCTGATG</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_786">TAATGAAC</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_851">TCCAGCAA</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_861">TCCTTGGT</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_866">TCGCCTTG</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_875">TCTCGGTC</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_938">TTACGCAC</BASECALL>
              <BASECALL match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_959">TTGAATAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>77</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>BI Project Names</TAG>
        <VALUE>G4659, G4660, G4664, G4668, G4669, G4678, G4679, G4680, G4685, G4686, G4690, G4691, G4694, G4696, G4698, G4702, G4712, G4719, G4720, G4722, G4723, G4727, G4728</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>BI GSSR Sample IDs</TAG>
        <VALUE>58383.2, 58384.2, 58388.2, 58392.2, 58393.2, 58402.2, 58403.2, 58404.2, 58409.2, 58410.2, 58414.2, 58415.2, 58418.2, 58420.2, 58422.2, 58426.2, 58436.2, 58443.2, 58444.2, 58446.2, 58447.2, 58451.2, 58452.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>BI Work Request ID</TAG>
        <VALUE>23211</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX029131" center_name="BI" alias="82866.WR23212.Solexa-39223.61PABAAXX100816.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX029131</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">82866.WR23212.Solexa-39223.61PABAAXX100816.P</SUBMITTER_ID>
      <UUID>7accdb2c-7a8e-4701-b1c3-776039ad8fe8</UUID>
    </IDENTIFIERS>
    <TITLE>Genome Sequencing of Mycobacterium tuberculosis PGG1</TITLE>
    <STUDY_REF accession="SRP003679">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP003679</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA49647</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Mycobacterium tuberculosis">Mycobacterium tuberculosis PGG1 project ltp_E7G_WGS_Multiisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Mycobacterium tuberculosis HN4705 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS024887">
        <POOL>
          <DEFAULT_MEMBER>
            <IDENTIFIERS>
              <PRIMARY_ID>SRS024887</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN00009845</EXTERNAL_ID>
              <EXTERNAL_ID namespace="NCBI">unidentified</EXTERNAL_ID>
            </IDENTIFIERS>
          </DEFAULT_MEMBER>
          <MEMBER member_name="tagged_109_ACAGGTAT" proportion="0.04166667" accession="SRS117954">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS117954</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58411.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_109">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="tagged_151_ACTAAGAC" proportion="0.04166667" accession="SRS117956">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS117956</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58424.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_151">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="tagged_218_AGGTAAGG" proportion="0.04166667" accession="SRS117944">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS117944</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58445.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_218">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="tagged_23_AACGCATT" proportion="0.04166667" accession="SRS117946">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS117946</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58448.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_23">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="tagged_288_ATTATCAA" proportion="0.04166667" accession="SRS116427">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS116427</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58416.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_288">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="tagged_309_CAACTCTC" proportion="0.04166667" accession="SRS117951">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS117951</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58450.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_309">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="tagged_355_CAGCGGTA" proportion="0.04166667" accession="SRS117957">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS117957</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58442.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_355">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="tagged_379_CCAACATT" proportion="0.04166667" accession="SRS117960">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS117960</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58425.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_379">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="tagged_469_CGCCTTCC" proportion="0.04166667" accession="SRS117952">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS117952</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58449.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_469">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="tagged_500_CTAACTCG" proportion="0.04166667" accession="SRS117958">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS117958</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58433.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_500">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="tagged_509_CTATGCGT" proportion="0.04166667" accession="SRS117950">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS117950</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58407.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_509">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="tagged_542_CTGTAATC" proportion="0.04166667" accession="SRS116420">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS116420</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58390.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_542">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="tagged_581_GACCAGGA" proportion="0.04166667" accession="SRS117947">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS117947</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58438.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_581">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="tagged_655_GCCGTCGA" proportion="0.04166667" accession="SRS117955">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS117955</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58406.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_655">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="tagged_657_GCCTAGCC" proportion="0.04166667" accession="SRS116417">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS116417</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58391.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_657">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="tagged_732_GTAACATC" proportion="0.04166667" accession="SRS116409">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS116409</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58412.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_732">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="tagged_747_GTCCACAG" proportion="0.04166667" accession="SRS117943">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS117943</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58431.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_747">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="tagged_778_TAAGCACA" proportion="0.04166667" accession="SRS116403">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS116403</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58396.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_778">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="tagged_78_AATGTTCT" proportion="0.04166667" accession="SRS117945">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS117945</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58398.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_78">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="tagged_818_TATCCAGG" proportion="0.04166667" accession="SRS116419">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS116419</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58413.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_818">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="tagged_821_TATCTGCC" proportion="0.04166667" accession="SRS117953">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS117953</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58432.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_821">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="tagged_910_TGCTGCTG" proportion="0.04166667" accession="SRS117948">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS117948</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58397.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_910">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="tagged_924_TGTAATCA" proportion="0.04166667" accession="SRS116433">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS116433</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58441.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_924">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER member_name="tagged_968_TTGTCTAT" proportion="0.04166667" accession="SRS117949">
            <IDENTIFIERS>
              <PRIMARY_ID>SRS117949</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58400.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_968">barcode</READ_LABEL>
          </MEMBER>
        </POOL>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-37835&amp;Solexa-37836&amp;Solexa-37839&amp;Solexa-37865&amp;Solexa-37872&amp;Solexa-37873&amp;Solexa-37875&amp;Solexa-37900&amp;Solexa-37901&amp;Solexa-37902&amp;Solexa-37903&amp;Solexa-37905&amp;Solexa-39223</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="49.9037063888889"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>144</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="69">
              <BASECALL read_group_tag="tagged_109" min_match="7" max_mismatch="1" match_edge="full">ACAGGTAT</BASECALL>
              <BASECALL read_group_tag="tagged_151" min_match="7" max_mismatch="1" match_edge="full">ACTAAGAC</BASECALL>
              <BASECALL read_group_tag="tagged_218" min_match="7" max_mismatch="1" match_edge="full">AGGTAAGG</BASECALL>
              <BASECALL read_group_tag="tagged_23" min_match="7" max_mismatch="1" match_edge="full">AACGCATT</BASECALL>
              <BASECALL read_group_tag="tagged_288" min_match="7" max_mismatch="1" match_edge="full">ATTATCAA</BASECALL>
              <BASECALL read_group_tag="tagged_309" min_match="7" max_mismatch="1" match_edge="full">CAACTCTC</BASECALL>
              <BASECALL read_group_tag="tagged_355" min_match="7" max_mismatch="1" match_edge="full">CAGCGGTA</BASECALL>
              <BASECALL read_group_tag="tagged_379" min_match="7" max_mismatch="1" match_edge="full">CCAACATT</BASECALL>
              <BASECALL read_group_tag="tagged_469" min_match="7" max_mismatch="1" match_edge="full">CGCCTTCC</BASECALL>
              <BASECALL read_group_tag="tagged_500" min_match="7" max_mismatch="1" match_edge="full">CTAACTCG</BASECALL>
              <BASECALL read_group_tag="tagged_509" min_match="7" max_mismatch="1" match_edge="full">CTATGCGT</BASECALL>
              <BASECALL read_group_tag="tagged_542" min_match="7" max_mismatch="1" match_edge="full">CTGTAATC</BASECALL>
              <BASECALL read_group_tag="tagged_581" min_match="7" max_mismatch="1" match_edge="full">GACCAGGA</BASECALL>
              <BASECALL read_group_tag="tagged_655" min_match="7" max_mismatch="1" match_edge="full">GCCGTCGA</BASECALL>
              <BASECALL read_group_tag="tagged_657" min_match="7" max_mismatch="1" match_edge="full">GCCTAGCC</BASECALL>
              <BASECALL read_group_tag="tagged_732" min_match="7" max_mismatch="1" match_edge="full">GTAACATC</BASECALL>
              <BASECALL read_group_tag="tagged_747" min_match="7" max_mismatch="1" match_edge="full">GTCCACAG</BASECALL>
              <BASECALL read_group_tag="tagged_778" min_match="7" max_mismatch="1" match_edge="full">TAAGCACA</BASECALL>
              <BASECALL read_group_tag="tagged_78" min_match="7" max_mismatch="1" match_edge="full">AATGTTCT</BASECALL>
              <BASECALL read_group_tag="tagged_818" min_match="7" max_mismatch="1" match_edge="full">TATCCAGG</BASECALL>
              <BASECALL read_group_tag="tagged_821" min_match="7" max_mismatch="1" match_edge="full">TATCTGCC</BASECALL>
              <BASECALL read_group_tag="tagged_910" min_match="7" max_mismatch="1" match_edge="full">TGCTGCTG</BASECALL>
              <BASECALL read_group_tag="tagged_924" min_match="7" max_mismatch="1" match_edge="full">TGTAATCA</BASECALL>
              <BASECALL read_group_tag="tagged_968" min_match="7" max_mismatch="1" match_edge="full">TTGTCTAT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>77</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
          <STEP_INDEX>2010-08-24 09:47:08.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Rig Software</PROGRAM>
          <VERSION>2.8.96</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-08-24 09:47:50.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>1.8.0</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_ids</TAG>
        <VALUE>58390.3 58391.2 58396.2 58397.2 58398.2 58400.2 58406.2 58407.2 58411.2 58412.2 58413.3 58416.2 58424.2 58425.2 58431.2 58432.2 58433.2 58438.2 58441.2 58442.2 58445.2 58448.2 58449.2 58450.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsids</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:58390.3 BROAD:SEQUENCING_SAMPLE:58391.2 BROAD:SEQUENCING_SAMPLE:58396.2 BROAD:SEQUENCING_SAMPLE:58397.2 BROAD:SEQUENCING_SAMPLE:58398.2 BROAD:SEQUENCING_SAMPLE:58400.2 BROAD:SEQUENCING_SAMPLE:58406.2 BROAD:SEQUENCING_SAMPLE:58407.2 BROAD:SEQUENCING_SAMPLE:58411.2 BROAD:SEQUENCING_SAMPLE:58412.2 BROAD:SEQUENCING_SAMPLE:58413.3 BROAD:SEQUENCING_SAMPLE:58416.2 BROAD:SEQUENCING_SAMPLE:58424.2 BROAD:SEQUENCING_SAMPLE:58425.2 BROAD:SEQUENCING_SAMPLE:58431.2 BROAD:SEQUENCING_SAMPLE:58432.2 BROAD:SEQUENCING_SAMPLE:58433.2 BROAD:SEQUENCING_SAMPLE:58438.2 BROAD:SEQUENCING_SAMPLE:58441.2 BROAD:SEQUENCING_SAMPLE:58442.2 BROAD:SEQUENCING_SAMPLE:58445.2 BROAD:SEQUENCING_SAMPLE:58448.2 BROAD:SEQUENCING_SAMPLE:58449.2 BROAD:SEQUENCING_SAMPLE:58450.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>projects</TAG>
        <VALUE>G4666 G4667 G4672 G4673 G4674 G4676 G4682 G4683 G4687 G4688 G4689 G4692 G4700 G4701 G4707 G4708 G4709 G4714 G4717 G4718 G4721 G4724 G4725 G4726</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>PULMONARY</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>23212</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX029132</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">82866.WR23211.Solexa-38750.624THAAXX100806.P</SUBMITTER_ID>
      <UUID>c1637f47-ab60-4e99-8ee8-1c2f92b09f3a</UUID>
    </IDENTIFIERS>
    <TITLE>Genome Sequencing of Mycobacterium tuberculosis PGG1</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP003679</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA49647</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Mycobacterium tuberculosis">Mycobacterium tuberculosis PGG1 project ltp_E7G_WGS_Multiisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Mycobacterium tuberculosis HN4707 via random selection</DESIGN_DESCRIPTION>
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        <POOL>
          <DEFAULT_MEMBER>
            <IDENTIFIERS>
              <PRIMARY_ID>SRS024887</PRIMARY_ID>
              <EXTERNAL_ID namespace="biosample">SAMN00009845</EXTERNAL_ID>
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          </DEFAULT_MEMBER>
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              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58388.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_388">barcode</READ_LABEL>
          </MEMBER>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS116421</PRIMARY_ID>
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            </IDENTIFIERS>
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            <IDENTIFIERS>
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              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58444.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_426">barcode</READ_LABEL>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS116422</PRIMARY_ID>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_438">barcode</READ_LABEL>
          </MEMBER>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS116414</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58418.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_498">barcode</READ_LABEL>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS116425</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58403.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_559">barcode</READ_LABEL>
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              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58451.0</SUBMITTER_ID>
            </IDENTIFIERS>
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            <IDENTIFIERS>
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            </IDENTIFIERS>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS116438</PRIMARY_ID>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_752">barcode</READ_LABEL>
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            <IDENTIFIERS>
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            </IDENTIFIERS>
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              <PRIMARY_ID>SRS116407</PRIMARY_ID>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_786">barcode</READ_LABEL>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_851">barcode</READ_LABEL>
          </MEMBER>
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              <PRIMARY_ID>SRS116410</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58420.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_861">barcode</READ_LABEL>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS116443</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58404.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_866">barcode</READ_LABEL>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS116448</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58384.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_938">barcode</READ_LABEL>
          </MEMBER>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS116416</PRIMARY_ID>
              <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58409.0</SUBMITTER_ID>
            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_959">barcode</READ_LABEL>
          </MEMBER>
        </POOL>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-37842&amp;Solexa-37847&amp;Solexa-37851&amp;Solexa-37852&amp;Solexa-37854&amp;Solexa-37860&amp;Solexa-37861&amp;Solexa-37879&amp;Solexa-37883&amp;Solexa-37885&amp;Solexa-37887&amp;Solexa-37896&amp;Solexa-37898</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="44.3553717021277"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>144</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="69">
              <BASECALL read_group_tag="tagged_214" min_match="7" max_mismatch="1" match_edge="full">AGGATCTA</BASECALL>
              <BASECALL read_group_tag="tagged_223" min_match="7" max_mismatch="1" match_edge="full">AGGTTATC</BASECALL>
              <BASECALL read_group_tag="tagged_250" min_match="7" max_mismatch="1" match_edge="full">ATAGCGTC</BASECALL>
              <BASECALL read_group_tag="tagged_293" min_match="7" max_mismatch="1" match_edge="full">ATTCTAGG</BASECALL>
              <BASECALL read_group_tag="tagged_298" min_match="7" max_mismatch="1" match_edge="full">ATTGTCTG</BASECALL>
              <BASECALL read_group_tag="tagged_352" min_match="7" max_mismatch="1" match_edge="full">CAGCAAGG</BASECALL>
              <BASECALL read_group_tag="tagged_388" min_match="7" max_mismatch="1" match_edge="full">CCAGAGCT</BASECALL>
              <BASECALL read_group_tag="tagged_38" min_match="7" max_mismatch="1" match_edge="full">AAGACACT</BASECALL>
              <BASECALL read_group_tag="tagged_426" min_match="7" max_mismatch="1" match_edge="full">CCTATGCC</BASECALL>
              <BASECALL read_group_tag="tagged_438" min_match="7" max_mismatch="1" match_edge="full">CCTTCGCA</BASECALL>
              <BASECALL read_group_tag="tagged_498" min_match="7" max_mismatch="1" match_edge="full">CGTTACCA</BASECALL>
              <BASECALL read_group_tag="tagged_559" min_match="7" max_mismatch="1" match_edge="full">GAACCTAG</BASECALL>
              <BASECALL read_group_tag="tagged_564" min_match="7" max_mismatch="1" match_edge="full">GAAGAAGT</BASECALL>
              <BASECALL read_group_tag="tagged_579" min_match="7" max_mismatch="1" match_edge="full">GACAGTAA</BASECALL>
              <BASECALL read_group_tag="tagged_745" min_match="7" max_mismatch="1" match_edge="full">GTCATCTA</BASECALL>
              <BASECALL read_group_tag="tagged_752" min_match="7" max_mismatch="1" match_edge="full">GTCGCCTT</BASECALL>
              <BASECALL read_group_tag="tagged_754" min_match="7" max_mismatch="1" match_edge="full">GTCTGATG</BASECALL>
              <BASECALL read_group_tag="tagged_786" min_match="7" max_mismatch="1" match_edge="full">TAATGAAC</BASECALL>
              <BASECALL read_group_tag="tagged_851" min_match="7" max_mismatch="1" match_edge="full">TCCAGCAA</BASECALL>
              <BASECALL read_group_tag="tagged_861" min_match="7" max_mismatch="1" match_edge="full">TCCTTGGT</BASECALL>
              <BASECALL read_group_tag="tagged_866" min_match="7" max_mismatch="1" match_edge="full">TCGCCTTG</BASECALL>
              <BASECALL read_group_tag="tagged_875" min_match="7" max_mismatch="1" match_edge="full">TCTCGGTC</BASECALL>
              <BASECALL read_group_tag="tagged_938" min_match="7" max_mismatch="1" match_edge="full">TTACGCAC</BASECALL>
              <BASECALL read_group_tag="tagged_959" min_match="7" max_mismatch="1" match_edge="full">TTGAATAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>77</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
          <STEP_INDEX>2010-08-14 09:53:32.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Rig Software</PROGRAM>
          <VERSION>2.8.96</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-08-14 09:54:29.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>1.8.0</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_ids</TAG>
        <VALUE>58383.2 58384.2 58388.2 58392.2 58393.2 58395.2 58402.2 58403.2 58404.2 58409.2 58410.2 58414.2 58415.2 58418.2 58420.2 58422.2 58426.2 58436.2 58443.2 58444.2 58446.2 58447.2 58451.2 58452.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsids</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:58383.2 BROAD:SEQUENCING_SAMPLE:58384.2 BROAD:SEQUENCING_SAMPLE:58388.2 BROAD:SEQUENCING_SAMPLE:58392.2 BROAD:SEQUENCING_SAMPLE:58393.2 BROAD:SEQUENCING_SAMPLE:58395.2 BROAD:SEQUENCING_SAMPLE:58402.2 BROAD:SEQUENCING_SAMPLE:58403.2 BROAD:SEQUENCING_SAMPLE:58404.2 BROAD:SEQUENCING_SAMPLE:58409.2 BROAD:SEQUENCING_SAMPLE:58410.2 BROAD:SEQUENCING_SAMPLE:58414.2 BROAD:SEQUENCING_SAMPLE:58415.2 BROAD:SEQUENCING_SAMPLE:58418.2 BROAD:SEQUENCING_SAMPLE:58420.2 BROAD:SEQUENCING_SAMPLE:58422.2 BROAD:SEQUENCING_SAMPLE:58426.2 BROAD:SEQUENCING_SAMPLE:58436.2 BROAD:SEQUENCING_SAMPLE:58443.2 BROAD:SEQUENCING_SAMPLE:58444.2 BROAD:SEQUENCING_SAMPLE:58446.2 BROAD:SEQUENCING_SAMPLE:58447.2 BROAD:SEQUENCING_SAMPLE:58451.2 BROAD:SEQUENCING_SAMPLE:58452.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>projects</TAG>
        <VALUE>G4659 G4660 G4664 G4668 G4669 G4671 G4678 G4679 G4680 G4685 G4686 G4690 G4691 G4694 G4696 G4698 G4702 G4712 G4719 G4720 G4722 G4723 G4727 G4728</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_types</TAG>
        <VALUE>BLOOD, LYMPHATIC, PULMONARY</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>23211</VALUE>
      </EXPERIMENT_ATTRIBUTE>
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            </IDENTIFIERS>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS116419</PRIMARY_ID>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_726">barcode</READ_LABEL>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_741">barcode</READ_LABEL>
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              <PRIMARY_ID>SRS116408</PRIMARY_ID>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_800">barcode</READ_LABEL>
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            <IDENTIFIERS>
              <PRIMARY_ID>SRS116424</PRIMARY_ID>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_869">barcode</READ_LABEL>
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            <IDENTIFIERS>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_880">barcode</READ_LABEL>
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              <PRIMARY_ID>SRS116406</PRIMARY_ID>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_908">barcode</READ_LABEL>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_927">barcode</READ_LABEL>
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              <PRIMARY_ID>SRS116417</PRIMARY_ID>
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            </IDENTIFIERS>
            <READ_LABEL read_group_tag="tagged_954">barcode</READ_LABEL>
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          <MEMBER member_name="tagged_960_TTGAGCCT" proportion="0.04166667" accession="SRS116434">
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              <PRIMARY_ID>SRS116434</PRIMARY_ID>
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            <READ_LABEL read_group_tag="tagged_960">barcode</READ_LABEL>
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      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-37848&amp;Solexa-37850&amp;Solexa-37889&amp;Solexa-37891</LIBRARY_NAME>
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        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
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          <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="47.2631799999999"/>
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      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
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            <READ_INDEX>0</READ_INDEX>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="69">
              <BASECALL read_group_tag="tagged_117" min_match="7" max_mismatch="1" match_edge="full">ACCAACTG</BASECALL>
              <BASECALL read_group_tag="tagged_190" min_match="7" max_mismatch="1" match_edge="full">AGCAATTC</BASECALL>
              <BASECALL read_group_tag="tagged_236" min_match="7" max_mismatch="1" match_edge="full">AGTTGCTT</BASECALL>
              <BASECALL read_group_tag="tagged_289" min_match="7" max_mismatch="1" match_edge="full">ATTATGTT</BASECALL>
              <BASECALL read_group_tag="tagged_332" min_match="7" max_mismatch="1" match_edge="full">CACATCCT</BASECALL>
              <BASECALL read_group_tag="tagged_34" min_match="7" max_mismatch="1" match_edge="full">AACTTGAC</BASECALL>
              <BASECALL read_group_tag="tagged_357" min_match="7" max_mismatch="1" match_edge="full">CAGGAGCC</BASECALL>
              <BASECALL read_group_tag="tagged_367" min_match="7" max_mismatch="1" match_edge="full">CATAGCGA</BASECALL>
              <BASECALL read_group_tag="tagged_375" min_match="7" max_mismatch="1" match_edge="full">CATGCTTA</BASECALL>
              <BASECALL read_group_tag="tagged_393" min_match="7" max_mismatch="1" match_edge="full">CCAGTTAG</BASECALL>
              <BASECALL read_group_tag="tagged_422" min_match="7" max_mismatch="1" match_edge="full">CCTACCAT</BASECALL>
              <BASECALL read_group_tag="tagged_504" min_match="7" max_mismatch="1" match_edge="full">CTACCAGG</BASECALL>
              <BASECALL read_group_tag="tagged_52" min_match="7" max_mismatch="1" match_edge="full">AAGGATGT</BASECALL>
              <BASECALL read_group_tag="tagged_629" min_match="7" max_mismatch="1" match_edge="full">GCACACGA</BASECALL>
              <BASECALL read_group_tag="tagged_630" min_match="7" max_mismatch="1" match_edge="full">GCACATCT</BASECALL>
              <BASECALL read_group_tag="tagged_726" min_match="7" max_mismatch="1" match_edge="full">GGTCCAGA</BASECALL>
              <BASECALL read_group_tag="tagged_741" min_match="7" max_mismatch="1" match_edge="full">GTATAACA</BASECALL>
              <BASECALL read_group_tag="tagged_800" min_match="7" max_mismatch="1" match_edge="full">TACTTAGC</BASECALL>
              <BASECALL read_group_tag="tagged_869" min_match="7" max_mismatch="1" match_edge="full">TCGGAATG</BASECALL>
              <BASECALL read_group_tag="tagged_880" min_match="7" max_mismatch="1" match_edge="full">TCTGGCGA</BASECALL>
              <BASECALL read_group_tag="tagged_908" min_match="7" max_mismatch="1" match_edge="full">TGCTCGAC</BASECALL>
              <BASECALL read_group_tag="tagged_927" min_match="7" max_mismatch="1" match_edge="full">TGTCGGAT</BASECALL>
              <BASECALL read_group_tag="tagged_954" min_match="7" max_mismatch="1" match_edge="full">TTCGCTGA</BASECALL>
              <BASECALL read_group_tag="tagged_960" min_match="7" max_mismatch="1" match_edge="full">TTGAGCCT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>77</BASE_COORD>
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        </SPOT_DECODE_SPEC>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL>
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        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-08-14 09:54:29.0</STEP_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsids</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_types</TAG>
        <VALUE>LYMPHATIC, PULMONARY</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>23210</VALUE>
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    <TITLE>Genome Sequencing of Anopheles gambiae</TITLE>
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    </STUDY_REF>
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        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
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            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="102">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">GTCGCCTT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
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        <TAG>project</TAG>
        <VALUE>G8742</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>24334</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX042068</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">82866.WR23211.Solexa-37854.624THAAXX100806.P</SUBMITTER_ID>
      <UUID>bc921dfe-12ab-4a78-8160-b3a446b09c51</UUID>
    </IDENTIFIERS>
    <TITLE>Genome Sequencing of Mycobacterium tuberculosis PGG1</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP003679</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA49647</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Mycobacterium tuberculosis">Mycobacterium tuberculosis PGG1 project ltp_E7G_WGS_Multiisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Mycobacterium tuberculosis HN353 via random selection</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS116448</PRIMARY_ID>
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        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
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        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
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        </LIBRARY_LAYOUT>
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      <SPOT_DESCRIPTOR>
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          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="69">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">TTACGCAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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          <READ_SPEC>
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              <BASECALL min_match="7" max_mismatch="1" match_edge="full">AAGACACT</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="102">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">AAGGATGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
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    <TITLE>Genome Sequencing of Coprobacillus sp. 3_3_56FAA</TITLE>
    <STUDY_REF accession="SRP006154">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP006154</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA40019</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Coprobacillus sp. 3_3_56FAA">Reference Genome for Human Microbiome Project Coprobacillus_sp_3_3_56FAA_ltp_HMPREF1021_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>low coverage of genome on 454</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS183219">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS183219</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:38490.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-7077</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="417"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE base_coord="1" default_length="4">
              <BASECALL match_edge="full" max_mismatch="0" min_match="4">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE base_coord="5" default_length="7">
              <BASECALL match_edge="full" max_mismatch="0" min_match="7">TCACCTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>12</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL match_edge="full" max_mismatch="5" min_match="40">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL match_edge="full" max_mismatch="5" min_match="38">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL match_edge="full" max_mismatch="5" min_match="38">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-04-29 15:13:03.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>38490.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:38490.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2851</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>24904</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX042080" center_name="BI" alias="21363.WR24904.454-7077.747161110428.P.UNMATCHED">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX042080</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">21363.WR24904.454-7077.747161110428.P.UNMATCHED</SUBMITTER_ID>
      <UUID>a5f218bb-fc14-403d-8838-7390bc68773c</UUID>
    </IDENTIFIERS>
    <TITLE>Genome Sequencing of Coprobacillus sp. 3_3_56FAA</TITLE>
    <STUDY_REF accession="SRP006154">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP006154</PRIMARY_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Coprobacillus sp. 3_3_56FAA">Reference Genome for Human Microbiome Project Coprobacillus_sp_3_3_56FAA_ltp_HMPREF1021_WGS_Monoisolate</EXTERNAL_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA40019</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>low coverage of genome on 454</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS183219">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS183219</PRIMARY_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-7077</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="417"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE base_coord="1" default_length="4">
              <BASECALL match_edge="full" max_mismatch="0" min_match="4">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE base_coord="5" default_length="7">
              <BASECALL match_edge="full" max_mismatch="0" min_match="7" read_group_tag="Helsinki">TCACCTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>12</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_LABEL>pe_linker</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL match_edge="full" max_mismatch="5" min_match="40">GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
              <BASECALL match_edge="full" max_mismatch="5" min_match="38">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL match_edge="full" max_mismatch="5" min_match="38">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>4</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="3"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-04-29 15:13:03.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>38490.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:38490.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2851</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>24904</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX042081" center_name="BI" alias="20177.WR24907.454-7003.747163110404.S.UNMATCHED">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX042081</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">20177.WR24907.454-7003.747163110404.S.UNMATCHED</SUBMITTER_ID>
      <UUID>fc595b1c-a6bf-4e57-91f2-f927390e9b86</UUID>
    </IDENTIFIERS>
    <TITLE>Genome sequencing of Campylobacter sp. 10_1_50</TITLE>
    <STUDY_REF accession="SRP006482">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP006482</PRIMARY_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Campylobacter sp. 10_1_50">Reference Genome for Human Microbiome Project Campylobacter_sp_10_1_50_ltp_HMPREF1019_WGS_Monoisolate</EXTERNAL_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA40015</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>low coverage of genome on 454</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS188764">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS188764</PRIMARY_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-7003</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL read_group_tag="Seoul" min_match="8" max_mismatch="0" match_edge="full">AACCTGGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-04-11 22:41:10.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Alignment and Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>38497.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:38497.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2459</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>24907</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX042082" center_name="BI" alias="28376.WR21618.454-4364.748806110426.S.UNMATCHED">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX042082</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">28376.WR21618.454-4364.748806110426.S.UNMATCHED</SUBMITTER_ID>
      <UUID>3ae66402-2b86-422e-bf1c-90e92a6b767e</UUID>
    </IDENTIFIERS>
    <TITLE>Genome Sequencing of Clostridium aldenense WAL-18727</TITLE>
    <STUDY_REF accession="SRP002708">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP002708</PRIMARY_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Clostridium aldenense WAL-18727">Reference genome for the Human Microbiome Project Clostridium_aldenense_WAL_18727_ltp_HMPREF9468_WGS_Monoisolate</EXTERNAL_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA46381</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>low coverage of genome on 454</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS084529">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS084529</PRIMARY_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-4364</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE base_coord="1" default_length="4">
              <BASECALL match_edge="full" max_mismatch="0" min_match="4">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE base_coord="5" default_length="8">
              <BASECALL match_edge="full" max_mismatch="0" min_match="8" read_group_tag="Kigali">AGTCCGTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-04-27 05:52:31.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Alignment and Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>46615.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:46615.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G4030</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>21618</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX042083" center_name="BI" alias="82866.WR23212.Solexa-37875.624THAAXX100806.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX042083</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">82866.WR23212.Solexa-37875.624THAAXX100806.P</SUBMITTER_ID>
      <UUID>4a8fe4b0-3365-42e7-ad63-70fc81817bcb</UUID>
    </IDENTIFIERS>
    <TITLE>Genome Sequencing of Mycobacterium tuberculosis PGG1</TITLE>
    <STUDY_REF accession="SRP003679">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP003679</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA49647</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Mycobacterium tuberculosis">Mycobacterium tuberculosis PGG1 project ltp_E7G_WGS_Multiisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Mycobacterium tuberculosis HN4171 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS116419">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS116419</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:58413.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-37875</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="200" NOMINAL_SDEV="52.0146233333333"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>144</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="69">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">TATCCAGG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>77</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
          <STEP_INDEX>2010-08-14 09:53:32.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Rig Software</PROGRAM>
          <VERSION>2.8.96</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-08-14 09:54:29.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
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    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Anopheles gambiae via random selection</DESIGN_DESCRIPTION>
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      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
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          <READ_SPEC>
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          <READ_SPEC>
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          <READ_SPEC>
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        <IDENTIFIERS>
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      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Pond-52413</LIBRARY_NAME>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
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            <READ_TYPE>BarCode</READ_TYPE>
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              <BASECALL min_match="7" max_mismatch="1" match_edge="full">CATAGCGA</BASECALL>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <PRIMARY_ID>SRX042100</PRIMARY_ID>
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    <TITLE>Genome Sequencing of Anopheles gambiae</TITLE>
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    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Anopheles gambiae via random selection</DESIGN_DESCRIPTION>
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        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
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      <SPOT_DESCRIPTOR>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="102">
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      <PIPELINE>
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    <EXPERIMENT_ATTRIBUTES>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:76559.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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    </EXPERIMENT_ATTRIBUTES>
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      <PRIMARY_ID>SRX042101</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>Illumina sequencing of Mycobacterium tuberculosis HN1889 via random selection</DESIGN_DESCRIPTION>
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          <READ_SPEC>
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            <READ_TYPE>BarCode</READ_TYPE>
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      <EXPERIMENT_ATTRIBUTE>
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      <PRIMARY_ID>SRX042102</PRIMARY_ID>
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    <TITLE>Genome Sequencing of Anopheles gambiae</TITLE>
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    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Anopheles gambiae via random selection</DESIGN_DESCRIPTION>
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      <SPOT_DESCRIPTOR>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
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              <BASECALL min_match="7" max_mismatch="1" match_edge="full">CCAGAGCT</BASECALL>
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      <EXPERIMENT_ATTRIBUTE>
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    <TITLE>Genome Sequencing of Anopheles gambiae</TITLE>
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      <DESIGN_DESCRIPTION>Illumina sequencing of Anopheles gambiae via random selection</DESIGN_DESCRIPTION>
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      <SPOT_DESCRIPTOR>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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  </EXPERIMENT>
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      <PRIMARY_ID>SRX042104</PRIMARY_ID>
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    <TITLE>Genome Sequencing of Mycobacterium tuberculosis PGG1</TITLE>
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      <DESIGN_DESCRIPTION>Illumina sequencing of Mycobacterium tuberculosis HN4140 via random selection</DESIGN_DESCRIPTION>
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          <READ_SPEC>
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              <BASECALL min_match="7" max_mismatch="1" match_edge="full">GTAACATC</BASECALL>
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      <EXPERIMENT_ATTRIBUTE>
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          <READ_SPEC>
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      <DESIGN_DESCRIPTION>Illumina sequencing of Anopheles gambiae via random selection</DESIGN_DESCRIPTION>
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      <SPOT_DESCRIPTOR>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="102">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">CCTATGCC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
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          <READ_SPEC>
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          <READ_SPEC>
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          <READ_SPEC>
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          <READ_SPEC>
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          <READ_SPEC>
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          <READ_SPEC>
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        <EXTERNAL_ID namespace="bioproject">PRJNA49647</EXTERNAL_ID>
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      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Mycobacterium tuberculosis HN3282 via random selection</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS116443</PRIMARY_ID>
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      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-37858</LIBRARY_NAME>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
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            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="69">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">TCGCCTTG</BASECALL>
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          <READ_SPEC>
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            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
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        </PIPE_SECTION>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-08-14 09:54:29.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>23211</VALUE>
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      <PRIMARY_ID>SRX042131</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">82866.WR23212.Solexa-37838.61PABAAXX100816.P</SUBMITTER_ID>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP003679</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA49647</EXTERNAL_ID>
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    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Mycobacterium tuberculosis HN1416 via random selection</DESIGN_DESCRIPTION>
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      <LIBRARY_DESCRIPTOR>
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      <SPOT_DESCRIPTOR>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="69">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">CTGTAATC</BASECALL>
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          <READ_SPEC>
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            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
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    <PROCESSING>
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        </PIPE_SECTION>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-08-24 09:47:50.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
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        </PIPE_SECTION>
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    <EXPERIMENT_ATTRIBUTES>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:58390.3</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G4666</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>PULMONARY</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>23212</VALUE>
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      <PRIMARY_ID>SRX042132</PRIMARY_ID>
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    <TITLE>Genome Sequencing of Anopheles gambiae</TITLE>
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        <PRIMARY_ID>SRP006512</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA60385</EXTERNAL_ID>
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        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="119"/>
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      <SPOT_DESCRIPTOR>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="102">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">TCCAGCAA</BASECALL>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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  </EXPERIMENT>
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      <PRIMARY_ID>SRX042133</PRIMARY_ID>
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    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Mycobacterium tuberculosis HN4702 via random selection</DESIGN_DESCRIPTION>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
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              <BASECALL min_match="7" max_mismatch="1" match_edge="full">TCTCGGTC</BASECALL>
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            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>23211</VALUE>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
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        <VALUE>23211</VALUE>
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        <PRIMARY_ID>SRP003679</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA49647</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Mycobacterium tuberculosis">Mycobacterium tuberculosis PGG1 project ltp_E7G_WGS_Multiisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Mycobacterium tuberculosis HN4706 via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS116446">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS116446</PRIMARY_ID>
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      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-37890</LIBRARY_NAME>
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      <SPOT_DESCRIPTOR>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="69">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">GAAGAAGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
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        </SPOT_DECODE_SPEC>
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        </PIPE_SECTION>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-08-14 09:54:29.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
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      <EXPERIMENT_ATTRIBUTE>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G4727</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>PULMONARY</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>23211</VALUE>
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      <PRIMARY_ID>SRX042136</PRIMARY_ID>
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    <TITLE>Genome Sequencing of Mycobacterium tuberculosis PGG1</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP003679</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA49647</EXTERNAL_ID>
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      <DESIGN_DESCRIPTION>Illumina sequencing of Mycobacterium tuberculosis HN4688 via random selection</DESIGN_DESCRIPTION>
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      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-37871</LIBRARY_NAME>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="69">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">CTAACTCG</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
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        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-08-24 09:47:50.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G4709</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>PULMONARY</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>23212</VALUE>
      </EXPERIMENT_ATTRIBUTE>
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      <PRIMARY_ID>SRX042137</PRIMARY_ID>
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    <TITLE>Genome Sequencing of Anopheles gambiae</TITLE>
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        <PRIMARY_ID>SRP006512</PRIMARY_ID>
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    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Anopheles gambiae via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS190335">
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          <PRIMARY_ID>SRS190335</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA60385.R12</SUBMITTER_ID>
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      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Pond-52403</LIBRARY_NAME>
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        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="93"/>
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      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
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            <READ_INDEX>0</READ_INDEX>
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            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="102">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">TCCTTGGT</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
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        <PIPE_SECTION section_name="base caller">
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    <EXPERIMENT_ATTRIBUTES>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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        <VALUE>24334</VALUE>
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      <PRIMARY_ID>SRX042138</PRIMARY_ID>
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    <TITLE>Genome Sequencing of Anopheles gambiae</TITLE>
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        <PRIMARY_ID>SRP006512</PRIMARY_ID>
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    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Anopheles gambiae via random selection</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS190356</PRIMARY_ID>
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        <LIBRARY_NAME>Pond-52424</LIBRARY_NAME>
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        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
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      <SPOT_DESCRIPTOR>
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            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="102">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">TCGCCTTG</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>24334</VALUE>
      </EXPERIMENT_ATTRIBUTE>
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      <PRIMARY_ID>SRX042139</PRIMARY_ID>
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    <TITLE>Genome Sequencing of Anopheles gambiae</TITLE>
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    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Anopheles gambiae via random selection</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS190344</PRIMARY_ID>
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        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
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      <SPOT_DESCRIPTOR>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="102">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">TCGGAATG</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
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      <PRIMARY_ID>SRX042140</PRIMARY_ID>
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    <TITLE>Genome Sequencing of Anopheles gambiae</TITLE>
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      <DESIGN_DESCRIPTION>Illumina sequencing of Anopheles gambiae via random selection</DESIGN_DESCRIPTION>
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      <EXPERIMENT_ATTRIBUTE>
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          <READ_SPEC>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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          <READ_SPEC>
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            <READ_LABEL>barcode</READ_LABEL>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>23211</VALUE>
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          <READ_SPEC>
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          <READ_SPEC>
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          <READ_SPEC>
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          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
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        </PIPE_SECTION>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-08-24 09:47:50.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
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      </PIPELINE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>23212</VALUE>
      </EXPERIMENT_ATTRIBUTE>
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    <IDENTIFIERS>
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          <READ_SPEC>
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            <READ_LABEL>barcode</READ_LABEL>
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        <PIPE_SECTION section_name="base caller">
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          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>23212</VALUE>
      </EXPERIMENT_ATTRIBUTE>
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      <PRIMARY_ID>SRX042157</PRIMARY_ID>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
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        </PIPE_SECTION>
        <PIPE_SECTION section_name="base caller">
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          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
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    <EXPERIMENT_ATTRIBUTES>
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      <EXPERIMENT_ATTRIBUTE>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>23212</VALUE>
      </EXPERIMENT_ATTRIBUTE>
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      <PRIMARY_ID>SRX042158</PRIMARY_ID>
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    <TITLE>Genome Sequencing of Mycobacterium tuberculosis PGG1</TITLE>
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    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Mycobacterium tuberculosis HN1418 via random selection</DESIGN_DESCRIPTION>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
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        </PIPE_SECTION>
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          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>23212</VALUE>
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          <READ_SPEC>
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            <READ_LABEL>barcode</READ_LABEL>
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          <READ_SPEC>
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            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="69">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">GTAACATC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>77</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
          <STEP_INDEX>2010-08-24 09:47:08.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Rig Software</PROGRAM>
          <VERSION>2.8.96</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-08-24 09:47:50.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>1.8.0</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>58412.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:58412.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G4688</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_type</TAG>
        <VALUE>PULMONARY</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>23212</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
</EXPERIMENT_SET>
