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        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
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        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Sheared Jumps: 2.5-3, 3-3.5 kb</LIBRARY_CONSTRUCTION_PROTOCOL>
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      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
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            <READ_INDEX>0</READ_INDEX>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
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      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-32914' containing sample GM12878</TITLE>
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      <DESIGN_DESCRIPTION>Multiple library types constructed and sequenced on Illumina platform</DESIGN_DESCRIPTION>
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        <LIBRARY_CONSTRUCTION_PROTOCOL>400bp fragment lib PCR FREE</LIBRARY_CONSTRUCTION_PROTOCOL>
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      <SPOT_DESCRIPTOR>
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          <SPOT_LENGTH>202</SPOT_LENGTH>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <EXPERIMENT_ATTRIBUTE>
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      <DESIGN_DESCRIPTION>Multiple library types constructed and sequenced on Illumina platform</DESIGN_DESCRIPTION>
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        <LIBRARY_CONSTRUCTION_PROTOCOL>Sheared Jumps: 2.5-3, 3-3.5 kb</LIBRARY_CONSTRUCTION_PROTOCOL>
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            <READ_INDEX>1</READ_INDEX>
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    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-32905' containing sample GM12878</TITLE>
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    <DESIGN>
      <DESIGN_DESCRIPTION>Multiple library types constructed and sequenced on Illumina platform</DESIGN_DESCRIPTION>
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        <LIBRARY_CONSTRUCTION_PROTOCOL>180bp fragment library PCR free</LIBRARY_CONSTRUCTION_PROTOCOL>
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          <SPOT_LENGTH>202</SPOT_LENGTH>
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            <READ_CLASS>Application Read</READ_CLASS>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>22416</VALUE>
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  <EXPERIMENT accession="SRX027701" center_name="BI" alias="105737.WR22416.Solexa-32906.205DBABXX100808.P">
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      <PRIMARY_ID>SRX027701</PRIMARY_ID>
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    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-32906' containing sample GM12878</TITLE>
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      <DESIGN_DESCRIPTION>Multiple library types constructed and sequenced on Illumina platform</DESIGN_DESCRIPTION>
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          <SPOT_LENGTH>202</SPOT_LENGTH>
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            <READ_INDEX>1</READ_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>22416</VALUE>
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      <PRIMARY_ID>SRX027702</PRIMARY_ID>
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    <TITLE>Genome Sequencing of Anopheles gambiae</TITLE>
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      <DESIGN_DESCRIPTION>Illumina sequencing of Anopheles gambiae via random selection</DESIGN_DESCRIPTION>
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          <READ_SPEC>
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            <READ_LABEL>barcode</READ_LABEL>
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            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
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    <TITLE>Genome Sequencing of Anopheles gambiae</TITLE>
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      <DESIGN_DESCRIPTION>Illumina sequencing of Anopheles gambiae via random selection</DESIGN_DESCRIPTION>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
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              <BASECALL min_match="7" max_mismatch="1" match_edge="full">CACATCCT</BASECALL>
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          <READ_SPEC>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
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        <PRIMARY_ID>SRP003680</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA52009</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Homo sapiens">Homo sapiens CEPH_UTAH_Pedigree_1463_ltp_EKW_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Multiple library types constructed and sequenced on Illumin platform</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS000090">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS000090</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN00801888</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">GM12878</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">NA12878</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-21462</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="522" NOMINAL_SDEV="85.6326514285714"/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>400bp lib HiSeq (plus accuprime)</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-06-04 21:45:50.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>1.8.0a5</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>42486.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:42486.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G4280</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>22084</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX028010" center_name="BI" alias="105737.WR22084.Solexa-21462.2025UABXX100526.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX028010</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">105737.WR22084.Solexa-21462.2025UABXX100526.P</SUBMITTER_ID>
      <UUID>61abc18e-0335-4ee3-b8e5-d2f0594f53a5</UUID>
    </IDENTIFIERS>
    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-21462' containing sample GM12878</TITLE>
    <STUDY_REF accession="SRP003680">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP003680</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA52009</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Homo sapiens">Homo sapiens CEPH_UTAH_Pedigree_1463_ltp_EKW_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Multiple library types constructed and sequenced on Illumin platform</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS000090">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS000090</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN00801888</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">GM12878</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">NA12878</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-21462</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="522" NOMINAL_SDEV="85.6326514285714"/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>400bp lib HiSeq (plus accuprime)</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-06-09 02:38:41.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>1.8.0a5</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>42486.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:42486.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G4280</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>22084</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX028011" center_name="BI" alias="127707.WR24334.Pond-52425.B00CBABXX110128.tagged_38.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX028011</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">127707.WR24334.Pond-52425.B00CBABXX110128.tagged_38.P</SUBMITTER_ID>
      <UUID>2beb996a-d8c5-4167-a66a-9122aba92e86</UUID>
    </IDENTIFIERS>
    <TITLE>Genome Sequencing of Anopheles gambiae</TITLE>
    <STUDY_REF accession="SRP006512">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP006512</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA60385</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Anopheles gambiae">Anopheles gambiae ltp_EWC_WGS_Multiisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Anopheles gambiae via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS190331">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS190331</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA60385.R3</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Pond-52425</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="93"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>210</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="102">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">AAGACACT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>110</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-02-07 18:52:16.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA 1.7.48.1</VERSION>
          <NOTES>Sequencer Application 1.1.37.19</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>76552.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:76552.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G8744</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>24334</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX028012" center_name="BI" alias="127707.WR24334.Pond-52437.B00CBABXX110128.tagged_52.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX028012</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">127707.WR24334.Pond-52437.B00CBABXX110128.tagged_52.P</SUBMITTER_ID>
      <UUID>2d44ea9a-488f-4af9-9d70-8af7368f251c</UUID>
    </IDENTIFIERS>
    <TITLE>Genome Sequencing of Anopheles gambiae</TITLE>
    <STUDY_REF accession="SRP006512">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP006512</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA60385</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Anopheles gambiae">Anopheles gambiae ltp_EWC_WGS_Multiisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Anopheles gambiae via random selection</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS190325">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS190325</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA60385.S6</SUBMITTER_ID>
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      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Pond-52437</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="134"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>210</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="102">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">AAGGATGT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
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      </SPOT_DESCRIPTOR>
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        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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          <PROGRAM>GAPipeline</PROGRAM>
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          <NOTES>Sequencer Application 1.1.37.19</NOTES>
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    <EXPERIMENT_ATTRIBUTES>
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        <VALUE>76575.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:76575.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G8767</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>24334</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX028013" center_name="BI" alias="12065.WR20054.454-3361.747110110411.S.UNMATCHED">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX028013</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">12065.WR20054.454-3361.747110110411.S.UNMATCHED</SUBMITTER_ID>
      <UUID>17eb9c8e-1651-479e-906e-36013724d59d</UUID>
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    <TITLE>Genome sequencing of Lachnospiraceae bacterium 5_1_57FAA on 454 for the HMP U54 project</TITLE>
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        <PRIMARY_ID>SRP001282</PRIMARY_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Lachnospiraceae bacterium 5_1_57FAA">Reference genome for the Human Microbiome Project Lachnospiraceae_bacterium_5_1_57FAA_ltp_HMPREF0993_WGS_Monoisolate</EXTERNAL_ID>
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    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Low coverage on 454</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS006272</PRIMARY_ID>
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      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-3361</LIBRARY_NAME>
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        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
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      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE base_coord="1" default_length="4">
              <BASECALL match_edge="full" max_mismatch="0" min_match="4">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE base_coord="5" default_length="8">
              <BASECALL match_edge="full" max_mismatch="0" min_match="8" read_group_tag="Riga">TTCGTGGC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
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        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>36683.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:36683.1</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2241</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>20054</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
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      <PRIMARY_ID>SRX028014</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">105737.WR22082.Solexa-18484.20259ABXX100518.P</SUBMITTER_ID>
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    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-18484' containing sample GM12878</TITLE>
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        <EXTERNAL_ID namespace="bioproject">PRJNA52009</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Homo sapiens">Homo sapiens CEPH_UTAH_Pedigree_1463_ltp_EKW_WGS_Monoisolate</EXTERNAL_ID>
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    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Multiple library types constructed and sequenced on Illumin platform</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS000090</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN00801888</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">GM12878</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">NA12878</EXTERNAL_ID>
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      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-18484</LIBRARY_NAME>
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        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="532" NOMINAL_SDEV="41.3527411111111"/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>400bp fragment library HiSeq minus Betaine</LIBRARY_CONSTRUCTION_PROTOCOL>
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      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-06-03 19:03:26.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
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        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:32975.5</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G4278</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>22082</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX028015" center_name="BI" alias="105737.WR22083.Solexa-21431.2025UABXX100526.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX028015</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">105737.WR22083.Solexa-21431.2025UABXX100526.P</SUBMITTER_ID>
      <UUID>fb94b9fa-7ca2-4fb6-a086-659a56f9ef9c</UUID>
    </IDENTIFIERS>
    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-21431' containing sample GM12878</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP003680</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA52009</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Homo sapiens">Homo sapiens CEPH_UTAH_Pedigree_1463_ltp_EKW_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Multiple library types constructed and sequenced on Illumin platform</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS000090">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS000090</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN00801888</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">GM12878</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">NA12878</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-21431</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="530" NOMINAL_SDEV="111.697379411765"/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>400bp fragment library HiSeq plus Betaine</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-06-09 02:38:41.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
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    <EXPERIMENT_ATTRIBUTES>
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        <VALUE>42486.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:42486.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G4279</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>22083</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX028016" center_name="BI" alias="105737.WR22083.Solexa-21431.20259ABXX100518.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX028016</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">105737.WR22083.Solexa-21431.20259ABXX100518.P</SUBMITTER_ID>
      <UUID>f930e8ec-62a2-4f6d-8778-6a3d2d257eeb</UUID>
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    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-21431' containing sample GM12878</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP003680</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA52009</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Homo sapiens">Homo sapiens CEPH_UTAH_Pedigree_1463_ltp_EKW_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Multiple library types constructed and sequenced on Illumin platform</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS000090">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS000090</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN00801888</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">GM12878</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">NA12878</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-21431</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="530" NOMINAL_SDEV="111.697379411765"/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>400bp fragment library HiSeq plus Betaine</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-06-03 19:03:26.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
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        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>42486.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:42486.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G4279</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>22083</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX028017" center_name="BI" alias="168991.WR21587.454-4313.734628100429.S.UNMATCHED">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX028017</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">168991.WR21587.454-4313.734628100429.S.UNMATCHED</SUBMITTER_ID>
      <UUID>2f3e96eb-655e-4edd-b0b4-7dcd5deb0f88</UUID>
    </IDENTIFIERS>
    <TITLE>GBMF Marine Phage Sequencing Project</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP005774</PRIMARY_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Argentine Sea Marine Metagenome">Argentine Sea Marine Metagenome WGS_Environment</EXTERNAL_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA47455</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>International collaboration to sequence, assemble, and annotate approximately 200 diverse marine phage/virus genomes and to sequence approximately 50 viral metagenomes from an array of marine environments. DNA sequencing using 454 technology.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS172675">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS172675</PRIMARY_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-4313</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
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      <SPOT_DESCRIPTOR>
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            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="6" base_coord="5">
              <BASECALL read_group_tag="Canberra" min_match="6" max_mismatch="0" match_edge="full">ACTTGC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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      </SPOT_DESCRIPTOR>
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      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
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        <PIPE_SECTION section_name="base caller">
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          <PROGRAM>454BaseCaller</PROGRAM>
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      </PIPELINE>
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    <EXPERIMENT_ATTRIBUTES>
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        <VALUE>DNA Viral 454 Alignment and Assembly</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>51416.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>BROAD:SEQUENCING_SAMPLE:51416.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G4005</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>21587</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
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      <PRIMARY_ID>SRX028018</PRIMARY_ID>
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    <TITLE>GBMF Marine Phage Sequencing Project</TITLE>
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        <EXTERNAL_ID namespace="Broad Institute" label="Raunefjorden Marine Metagenome">Raunefjorden Marine Metagenome WGS_Environment</EXTERNAL_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA47483</EXTERNAL_ID>
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    </STUDY_REF>
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      <DESIGN_DESCRIPTION>International collaboration to sequence, assemble, and annotate approximately 200 diverse marine phage/virus genomes and to sequence approximately 50 viral metagenomes from an array of marine environments. DNA sequencing using 454 technology.</DESIGN_DESCRIPTION>
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        <LIBRARY_NAME>454-4626</LIBRARY_NAME>
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        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <SINGLE/>
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            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL read_group_tag="Tokyo" min_match="8" max_mismatch="0" match_edge="full">TATTCGTC</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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      </SPOT_DESCRIPTOR>
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      <LS454>
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      </PIPELINE>
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    <EXPERIMENT_ATTRIBUTES>
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        <VALUE>DNA Viral 454 Alignment and Assembly</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>52956.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:52956.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2829</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>23260</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
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  <EXPERIMENT accession="SRX028019" center_name="BI" alias="175982.WR24672.454-6893.734480110309.Fongafale.S">
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      <PRIMARY_ID>SRX028019</PRIMARY_ID>
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      <UUID>0e708951-2d22-4cb3-bdac-9318413aae59</UUID>
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    <TITLE>Genome sequencing of Bacteroides oleiciplenus YIT 12058</TITLE>
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        <PRIMARY_ID>SRP006084</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA46377</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacteroides oleiciplenus YIT 12058">Reference genome for the Human Microbiome Project Bacteroides_oleiciplenus_YIT_12058_ltp_HMPREF9447_WGS_Monoisolate</EXTERNAL_ID>
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    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>low coverage of genome on 454</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS179086</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Bacteroides oleiciplenus YIT 12058</SUBMITTER_ID>
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      </SAMPLE_DESCRIPTOR>
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        <LIBRARY_NAME>454-6893</LIBRARY_NAME>
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        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
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          <SINGLE/>
        </LIBRARY_LAYOUT>
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      <SPOT_DESCRIPTOR>
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            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">CCAACCGGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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        </SPOT_DECODE_SPEC>
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      <LS454>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-04-12 20:30:49.0</STEP_INDEX>
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          <PROGRAM>454BaseCaller</PROGRAM>
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        </PIPE_SECTION>
      </PIPELINE>
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    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Alignment and Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>53808.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>DNA:DNA Genomic</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <TAG>work_request</TAG>
        <VALUE>22082</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX028025" center_name="BI" alias="169717.WR22828.454-4378.731708100730.S.UNMATCHED">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX028025</PRIMARY_ID>
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    <TITLE>GBMF Marine Phage Sequencing Project</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP005731</PRIMARY_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Raunefjorden Marine Metagenome">Raunefjorden Marine Metagenome WGS_Environment</EXTERNAL_ID>
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      <DESIGN_DESCRIPTION>International collaboration to sequence, assemble, and annotate approximately 200 diverse marine phage/virus genomes and to sequence approximately 50 viral metagenomes from an array of marine environments. DNA sequencing using 454 technology.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS172748">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS172748</PRIMARY_ID>
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        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <SINGLE/>
        </LIBRARY_LAYOUT>
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      <SPOT_DESCRIPTOR>
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            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL read_group_tag="Tashkent" min_match="9" max_mismatch="0" match_edge="full">ACCACCTTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
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        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>52952.1</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:52952.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2825</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>22828</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX028028" center_name="BI" alias="23725.WR23274.454-5187.736739100820.Cairo.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX028028</PRIMARY_ID>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP006485</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA53547</EXTERNAL_ID>
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    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>454 sequencing of Vibrio phage eugene 12A10 via polymerase chain reaction</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS188762</PRIMARY_ID>
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      <LIBRARY_DESCRIPTOR>
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        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>standard 454 LC</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
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            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL min_match="7" max_mismatch="0" match_edge="full">TCTTGGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>12</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
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      </PIPELINE>
    </PROCESSING>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>62667.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:62667.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G1837</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>23274</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX028029" center_name="BI" alias="173597.WR21581.454-4308.726107100429.S.UNMATCHED">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX028029</PRIMARY_ID>
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    <TITLE>GBMF Marine Phage Sequencing Project</TITLE>
    <STUDY_REF accession="SRP005800">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP005800</PRIMARY_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Gulf of Maine Marine Metagenome">Gulf of Maine Marine Metagenome WGS_Environment</EXTERNAL_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA52315</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>International collaboration to sequence, assemble, and annotate approximately 200 diverse marine phage/virus genomes and to sequence approximately 50 viral metagenomes from an array of marine environments. DNA sequencing using 454 technology.</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS172660</PRIMARY_ID>
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      </SAMPLE_DESCRIPTOR>
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        <LIBRARY_NAME>454-4308</LIBRARY_NAME>
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        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
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      <SPOT_DESCRIPTOR>
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            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
              <BASECALL read_group_tag="Zagreb" min_match="7" max_mismatch="0" match_edge="full">AGACCTC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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      <LS454>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>51414.1</VALUE>
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        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:51414.1</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G3999</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>21581</VALUE>
      </EXPERIMENT_ATTRIBUTE>
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  <EXPERIMENT accession="SRX028030" center_name="BI" alias="169849.WR20348.454-3495.721889091208.S.UNMATCHED">
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      <PRIMARY_ID>SRX028030</PRIMARY_ID>
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    <TITLE>GBMF Marine Phage Sequencing Project</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP005738</PRIMARY_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Appledore Island Marine Metagenome">Appledore Island Marine uncultured phage metagenome WGS_Environment</EXTERNAL_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA47451</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
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      <DESIGN_DESCRIPTION>International collaboration to sequence, assemble, and annotate approximately 200 diverse marine phage/virus genomes and to sequence approximately 50 viral metagenomes from an array of marine environments. DNA sequencing using 454 technology.</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS172807</PRIMARY_ID>
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        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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          <SINGLE/>
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          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
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            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL read_group_tag="Kiev" min_match="9" max_mismatch="0" match_edge="full">ACCGAATAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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        <TAG>analysis_type</TAG>
        <VALUE>DNA Viral 454 Alignment and Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>39908.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:39908.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2766</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>20348</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX028031" center_name="BI" alias="105737.WR22084.Solexa-21462.202ALABXX100513.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX028031</PRIMARY_ID>
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    </IDENTIFIERS>
    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-21462' containing sample GM12878</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP003680</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA52009</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Homo sapiens">Homo sapiens CEPH_UTAH_Pedigree_1463_ltp_EKW_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Multiple library types constructed and sequenced on Illumin platform</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS000090">
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          <PRIMARY_ID>SRS000090</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN00801888</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">GM12878</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">NA12878</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-21462</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="522" NOMINAL_SDEV="85.6326514285714"/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>400bp lib HiSeq (plus accuprime)</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
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        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-05-28 21:53:49.0</STEP_INDEX>
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          <PROGRAM>GAPipeline</PROGRAM>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:42486.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G4280</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>22084</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX028032" center_name="BI" alias="105737.WR22083.Solexa-21431.2025VABXX100518.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX028032</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">105737.WR22083.Solexa-21431.2025VABXX100518.P</SUBMITTER_ID>
      <UUID>c14b55a2-d11e-42b5-ab2b-399393108783</UUID>
    </IDENTIFIERS>
    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-21431' containing sample GM12878</TITLE>
    <STUDY_REF accession="SRP003680">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP003680</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA52009</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Homo sapiens">Homo sapiens CEPH_UTAH_Pedigree_1463_ltp_EKW_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Multiple library types constructed and sequenced on Illumin platform</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS000090">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS000090</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN00801888</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">GM12878</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">NA12878</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-21431</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="530" NOMINAL_SDEV="111.697379411765"/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>400bp fragment library HiSeq plus Betaine</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-06-04 21:45:50.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>1.8.0a5</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>42486.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:42486.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G4279</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>22083</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX028033" center_name="BI" alias="105737.WR22084.Solexa-21462.20266ABXX100513.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX028033</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">105737.WR22084.Solexa-21462.20266ABXX100513.P</SUBMITTER_ID>
      <UUID>976c1595-321b-4878-bf0e-0f583903fd1c</UUID>
    </IDENTIFIERS>
    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-21462' containing sample GM12878</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP003680</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA52009</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Homo sapiens">Homo sapiens CEPH_UTAH_Pedigree_1463_ltp_EKW_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Multiple library types constructed and sequenced on Illumin platform</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS000090">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS000090</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN00801888</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">GM12878</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">NA12878</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-21462</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="522" NOMINAL_SDEV="85.6326514285714"/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>400bp lib HiSeq (plus accuprime)</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2010-06-09 13:17:00.0</STEP_INDEX>
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          <PROGRAM>GAPipeline</PROGRAM>
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      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>42486.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:42486.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G4280</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>22084</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX028034" center_name="BI" alias="168982.WR19867.454-3436.719282091029.Freetown.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX028034</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">168982.WR19867.454-3436.719282091029.Freetown.S</SUBMITTER_ID>
      <UUID>77144882-ae3c-48ec-ac62-15a5c28e6c8b</UUID>
    </IDENTIFIERS>
    <TITLE>GBMF Marine Phage Sequencing Project</TITLE>
    <STUDY_REF accession="SRP005222">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP005222</PRIMARY_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Tampa Bay Marine Metagenome">2 samples from Tampa Bay marine uncultured phage metagenome WGS_Environment</EXTERNAL_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA47459</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>International collaboration to sequence, assemble, and annotate approximately 200 diverse marine phage/virus genomes and to sequence approximately 50 viral metagenomes from an array of marine environments. DNA sequencing using 454 technology.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS188763">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS188763</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA47459.030409-i</SUBMITTER_ID>
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      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-3436</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
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      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">TTCGCCGTC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>14</BASE_COORD>
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      </SPOT_DESCRIPTOR>
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      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2009-11-17 18:18:21.0</STEP_INDEX>
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          <PROGRAM>454BaseCaller</PROGRAM>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>DNA Viral 454 Alignment and Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>38780.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:38780.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2320</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>19867</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
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  <EXPERIMENT accession="SRX028035" center_name="BI" alias="105737.WR21525.Solexa-23916.613V9AAXX100409.P">
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      <PRIMARY_ID>SRX028035</PRIMARY_ID>
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    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-23916' containing sample GM12878</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP003680</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA52009</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Homo sapiens">Homo sapiens CEPH_UTAH_Pedigree_1463_ltp_EKW_WGS_Monoisolate</EXTERNAL_ID>
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    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina sequencing of Homo sapiens via random selection</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS000090</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN00801888</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">GM12878</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">NA12878</EXTERNAL_ID>
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      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-23916</LIBRARY_NAME>
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        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="600"/>
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        <LIBRARY_CONSTRUCTION_PROTOCOL>ShARC</LIBRARY_CONSTRUCTION_PROTOCOL>
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      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>152</SPOT_LENGTH>
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            <READ_INDEX>0</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL>
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        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>49239.2</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:49239.2</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G4276</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>21525</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
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  <EXPERIMENT accession="SRX028036" center_name="BI" alias="24311.WR21663.454-4375.747163110404.Nassau.S">
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      <PRIMARY_ID>SRX028036</PRIMARY_ID>
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    <TITLE>Genome Sequencing of Bacillus sp. 7_6_55_CFAA CT2</TITLE>
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        <PRIMARY_ID>SRP002536</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA40005</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Bacillus sp. 7_6_55CFAA_CT2">Reference genome for Human Microbiome Project Bacillus_sp_7_6_55CFAA_CT2_ltp_HMPREF1014_WGS_Monoisolate</EXTERNAL_ID>
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    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>low coverage of genome on 454</DESIGN_DESCRIPTION>
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      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-4375</LIBRARY_NAME>
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        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
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          <SINGLE/>
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      <SPOT_DESCRIPTOR>
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          <READ_SPEC>
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            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="6" base_coord="5">
              <BASECALL min_match="6" max_mismatch="0" match_edge="full">ACGCGC</BASECALL>
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          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
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      <LS454>
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        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Alignment and Assembly</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>38485.1</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:38485.1</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G3286</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>21663</VALUE>
      </EXPERIMENT_ATTRIBUTE>
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  <EXPERIMENT accession="SRX028037" center_name="BI" alias="105737.WR21213.Solexa-21168.61BCLAAXX100301.P">
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      <PRIMARY_ID>SRX028037</PRIMARY_ID>
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    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-21168' containing sample GM12878</TITLE>
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        <PRIMARY_ID>SRP003680</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA52009</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Homo sapiens">Homo sapiens CEPH_UTAH_Pedigree_1463_ltp_EKW_WGS_Monoisolate</EXTERNAL_ID>
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      <DESIGN_DESCRIPTION>Illumina sequencing of Homo sapiens via random selection</DESIGN_DESCRIPTION>
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          <EXTERNAL_ID namespace="biosample">SAMN00801888</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">GM12878</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">NA12878</EXTERNAL_ID>
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      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-21168</LIBRARY_NAME>
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        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
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            <EXPECTED_BASECALL_TABLE default_length="7" base_coord="5">
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      <EXPERIMENT_ATTRIBUTE>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="9" base_coord="5">
              <BASECALL min_match="9" max_mismatch="0" match_edge="full">TTCAGGTTC</BASECALL>
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          <READ_SPEC>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25315</VALUE>
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      <PRIMARY_ID>SRX028047</PRIMARY_ID>
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        <TAG>project</TAG>
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      <EXPERIMENT_ATTRIBUTE>
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          <PRIMARY_ID>SRS188764</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:38497.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-7003</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">AACCTGGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-04-11 22:41:10.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Alignment and Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>38497.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:38497.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2459</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>24907</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX028056" center_name="BI" alias="12065.WR20054.454-3361.747110110411.Riga.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX028056</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">12065.WR20054.454-3361.747110110411.Riga.S</SUBMITTER_ID>
      <UUID>e4be1f3f-7871-427b-99bf-7f7c1212ed82</UUID>
    </IDENTIFIERS>
    <TITLE>Genome sequencing of Lachnospiraceae bacterium 5_1_57FAA on 454 for the HMP U54 project</TITLE>
    <STUDY_REF accession="SRP001282">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001282</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA39387</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Lachnospiraceae bacterium 5_1_57FAA">Reference genome for the Human Microbiome Project Lachnospiraceae_bacterium_5_1_57FAA_ltp_HMPREF0993_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Low coverage on 454</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS006272">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS006272</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">BROAD:SEQUENCING_SAMPLE:36683.0</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-3361</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE base_coord="1" default_length="4">
              <BASECALL match_edge="full" max_mismatch="0" min_match="4">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE base_coord="5" default_length="8">
              <BASECALL match_edge="full" max_mismatch="0" min_match="8">TTCGTGGC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-04-12 20:51:02.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Alignment and Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>36683.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:36683.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2241</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>20054</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX028057" center_name="BI" alias="176044.WR24701.454-6999.747163110404.Amman.S">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX028057</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">176044.WR24701.454-6999.747163110404.Amman.S</SUBMITTER_ID>
      <UUID>e12905df-ab12-4326-b980-c73d37d86f46</UUID>
    </IDENTIFIERS>
    <TITLE>Genome sequencing of Oribacterium sp. ACB7</TITLE>
    <STUDY_REF accession="SRP006061">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP006061</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA49879</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Oribacterium sp. ACB7">Reference genome for the Human Microbiome Project Oribacterium_sp_ACB7_ltp_HMPREF9624_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>low coverage of genome on 454</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS178972">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS178972</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA28331.Oribacterium sp. ACB7</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>454-6999</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>key_sequence</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="4" base_coord="1">
              <BASECALL min_match="4" max_mismatch="0" match_edge="full">TCAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="5">
              <BASECALL min_match="8" max_mismatch="0" match_edge="full">TAGGAATC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>13</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-04-11 22:41:10.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>454BaseCaller</PROGRAM>
          <VERSION>2.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>analysis_type</TAG>
        <VALUE>Bacterial 454 Alignment and Assembly</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>57716.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:57716.1</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G10703</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>24701</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX028058" center_name="BI" alias="12214.WR25031.Solexa-62151.C01JRABXX110410.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX028058</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">12214.WR25031.Solexa-62151.C01JRABXX110410.P</SUBMITTER_ID>
      <UUID>e8168d6d-1073-439b-b265-848d027f8309</UUID>
    </IDENTIFIERS>
    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-62151' containing sample 'NA19649'</TITLE>
    <STUDY_REF accession="SRP000803">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP000803</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA38445</EXTERNAL_ID>
        <EXTERNAL_ID namespace="1000 Genomes Project" label="Whole genome sequencing of (MXL) Mexican ancestry in Los Angeles, California HapMap population">Whole genome sequencing of C Homo_sapiens_MXL_Mexican_ancestry_in_Los_Angeles_California_lcl_low_coverage_Americas_MXL_ltp_CGW_WGS_Multiisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina Low Coverage Whole Genome Sequencing</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS003636">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS003636</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN00007702</EXTERNAL_ID>
          <EXTERNAL_ID namespace="HapMap">NA19649</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell" label="Coriell cell culture ID">GM19649</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-62151</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="510" NOMINAL_SDEV="76.38555"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-04-18 11:19:09.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.10.36</VERSION>
          <NOTES>Sequencer Application 1.3.8</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>96874.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>broadinstitute.org:bsp.prod.sample:1U5LR</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>DNA:DNA Genomic</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>primary_disease</TAG>
        <VALUE>Control</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G2783</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>root_sample_id</TAG>
        <VALUE>SM-1QWOU</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_id</TAG>
        <VALUE>SM-1U5LR</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25031</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT center_name="BI" alias="20243.WR25031.Solexa-62141.C01JRABXX110410.P" accession="SRX028059">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX028059</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">20243.WR25031.Solexa-62141.C01JRABXX110410.P</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Illumina Low Coverage Whole Genome Sequencing</TITLE>
    <STUDY_REF accession="SRP001294" refcenter="NCBI" refname="1000 Genomes GBR population sequencing">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP001294</PRIMARY_ID>
        <SUBMITTER_ID namespace="1000 Genomes Project">1000 Genomes GBR population sequencing</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina Low Coverage Whole Genome Sequencing</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS008508" refcenter="NCBI" refname="HG00124">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS008508</PRIMARY_ID>
          <SUBMITTER_ID namespace="NCBI">HG00124</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-62141</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_SDEV="52.657" NOMINAL_LENGTH="510"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-04-18 11:19:09.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
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        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>BI GSSR sample ID</TAG>
        <VALUE>96860.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>BI GSSR sample LSID</TAG>
        <VALUE>broadinstitute.org:bsp.prod.sample:1U5LD</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>BI project name</TAG>
        <VALUE>G2935</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>BI work request ID</TAG>
        <VALUE>25031</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX028060" center_name="BI" alias="105737.WR22083.Solexa-21431.20266ABXX100513.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX028060</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">105737.WR22083.Solexa-21431.20266ABXX100513.P</SUBMITTER_ID>
      <UUID>70d1b6f9-c445-4bc7-a35d-a71e37ac9811</UUID>
    </IDENTIFIERS>
    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-21431' containing sample GM12878</TITLE>
    <STUDY_REF accession="SRP003680">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP003680</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA52009</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Homo sapiens">Homo sapiens CEPH_UTAH_Pedigree_1463_ltp_EKW_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Multiple library types constructed and sequenced on Illumin platform</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS000090">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS000090</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN00801888</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">GM12878</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">NA12878</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-21431</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="530" NOMINAL_SDEV="111.697379411765"/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>400bp fragment library HiSeq plus Betaine</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
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          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>Genomic DNA</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>22083</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX028061" center_name="BI" alias="105737.WR22083.Solexa-21431.202ALABXX100513.P">
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    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Multiple library types constructed and sequenced on Illumin platform</DESIGN_DESCRIPTION>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
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        </SPOT_DECODE_SPEC>
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      <ILLUMINA>
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        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT center_name="BI" alias="6734.WR25031.Solexa-61035.C01JRABXX110410.P" accession="SRX028062">
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      <PRIMARY_ID>SRX028062</PRIMARY_ID>
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    </IDENTIFIERS>
    <TITLE>Illumina Low Coverage Whole Genome Sequencing</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP000546</PRIMARY_ID>
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          <SUBMITTER_ID namespace="HapMap">NA18533</SUBMITTER_ID>
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      <LIBRARY_DESCRIPTOR>
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      <SPOT_DESCRIPTOR>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
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            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
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    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>BI GSSR sample LSID</TAG>
        <VALUE>broadinstitute.org:bsp.prod.sample:1U5LO</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>BI project name</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>BI work request ID</TAG>
        <VALUE>25031</VALUE>
      </EXPERIMENT_ATTRIBUTE>
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  <EXPERIMENT accession="SRX028065" center_name="BI" alias="12214.WR25031.Solexa-62147.C01JRABXX110410.P">
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    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-62147' containing sample 'NA19670'</TITLE>
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      <IDENTIFIERS>
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        <EXTERNAL_ID namespace="1000 Genomes Project" label="Whole genome sequencing of (MXL) Mexican ancestry in Los Angeles, California HapMap population">Whole genome sequencing of C Homo_sapiens_MXL_Mexican_ancestry_in_Los_Angeles_California_lcl_low_coverage_Americas_MXL_ltp_CGW_WGS_Multiisolate</EXTERNAL_ID>
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    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina Low Coverage Whole Genome Sequencing</DESIGN_DESCRIPTION>
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      <SPOT_DESCRIPTOR>
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          <READ_SPEC>
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      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>primary_disease</TAG>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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        <PRIMARY_ID>SRP001525</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA42573</EXTERNAL_ID>
        <EXTERNAL_ID namespace="1000 Genomes Project" label="Whole genome sequencing of (PUR) Puerto Rican in Puerto Rico HapMap population">Homo_sapiens_PUR_Puerto_Rican_in_Puerto_Rico_lcl_low_coverage_PUR_WGS_Monoisolate</EXTERNAL_ID>
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    <DESIGN>
      <DESIGN_DESCRIPTION>Illumina Low Coverage Whole Genome Sequencing</DESIGN_DESCRIPTION>
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      <SPOT_DESCRIPTOR>
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            <READ_INDEX>1</READ_INDEX>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>DNA:DNA Genomic</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G5017</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>root_sample_id</TAG>
        <VALUE>SM-1QWQ8</VALUE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>sample_id</TAG>
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      <EXPERIMENT_ATTRIBUTE>
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        <VALUE>25031</VALUE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP003680</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA52009</EXTERNAL_ID>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
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      <EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>22202</VALUE>
      </EXPERIMENT_ATTRIBUTE>
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      <EXPERIMENT_ATTRIBUTE>
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              <BASECALL read_group_tag="tagged_375" min_match="7" max_mismatch="1" match_edge="full">CATGCTTA</BASECALL>
              <BASECALL read_group_tag="tagged_393" min_match="7" max_mismatch="1" match_edge="full">CCAGTTAG</BASECALL>
              <BASECALL read_group_tag="tagged_504" min_match="7" max_mismatch="1" match_edge="full">CTACCAGG</BASECALL>
              <BASECALL read_group_tag="tagged_630" min_match="7" max_mismatch="1" match_edge="full">GCACATCT</BASECALL>
              <BASECALL read_group_tag="tagged_908" min_match="7" max_mismatch="1" match_edge="full">TGCTCGAC</BASECALL>
              <BASECALL read_group_tag="tagged_960" min_match="7" max_mismatch="1" match_edge="full">TTGAGCCT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>110</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-03-28 19:57:26.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.10.36</VERSION>
          <NOTES>Sequencer Application 1.3.8</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_ids</TAG>
        <VALUE>92077.0 92078.0 92079.0 92080.0 92081.0 92082.0 92083.0 92084.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsids</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:92077.0 BROAD:SEQUENCING_SAMPLE:92078.0 BROAD:SEQUENCING_SAMPLE:92079.0 BROAD:SEQUENCING_SAMPLE:92080.0 BROAD:SEQUENCING_SAMPLE:92081.0 BROAD:SEQUENCING_SAMPLE:92082.0 BROAD:SEQUENCING_SAMPLE:92083.0 BROAD:SEQUENCING_SAMPLE:92084.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>New Tech Library</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12043</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>24900</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX116626" center_name="BI" alias="105737.WR24900.Diana Tabbaa_NA12892 indexing_630.B068MABXX110309.tagged_630.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX116626</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">105737.WR24900.Diana Tabbaa_NA12892 indexing_630.B068MABXX110309.tagged_630.P</SUBMITTER_ID>
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    </IDENTIFIERS>
    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Diana Tabbaa_NA12892 indexing_630' containing sample GM12892</TITLE>
    <STUDY_REF accession="SRP003680">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP003680</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA52009</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Homo sapiens">Homo sapiens CEPH_UTAH_Pedigree_1463_ltp_EKW_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Multiple library types constructed and sequenced on Illumina platform</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
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          <EXTERNAL_ID namespace="biosample">SAMN00801914</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">GM12892</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">NA12892</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Diana Tabbaa_NA12892 indexing_630</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="40000"/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>FOSILL</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>210</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="102">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">GCACATCT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>110</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-03-28 19:57:26.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.10.36</VERSION>
          <NOTES>Sequencer Application 1.3.8</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>92082.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:92082.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>New Tech Library</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12043</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>24900</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX116627" center_name="BI" alias="105737.WR24900.Diana Tabbaa_NA12892 indexing_908.B068MABXX110309.tagged_908.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX116627</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">105737.WR24900.Diana Tabbaa_NA12892 indexing_908.B068MABXX110309.tagged_908.P</SUBMITTER_ID>
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    </IDENTIFIERS>
    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Diana Tabbaa_NA12892 indexing_908' containing sample GM12892</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP003680</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA52009</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Homo sapiens">Homo sapiens CEPH_UTAH_Pedigree_1463_ltp_EKW_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Multiple library types constructed and sequenced on Illumina platform</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS000092">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS000092</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN00801914</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">GM12892</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">NA12892</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Diana Tabbaa_NA12892 indexing_908</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="40000"/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>FOSILL</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>210</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="102">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">TGCTCGAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
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          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
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          <NOTES>Sequencer Application 1.3.8</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>92081.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:92081.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>New Tech Library</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12043</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>24900</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX116628" center_name="BI" alias="105737.WR24900.Diana Tabbaa_NA12892 indexing_504.B068MABXX110309.tagged_504.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX116628</PRIMARY_ID>
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    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Diana Tabbaa_NA12892 indexing_504' containing sample GM12892</TITLE>
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        <PRIMARY_ID>SRP003680</PRIMARY_ID>
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      </IDENTIFIERS>
    </STUDY_REF>
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          <EXTERNAL_ID namespace="Coriell">NA12892</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Diana Tabbaa_NA12892 indexing_504</LIBRARY_NAME>
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        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="40000"/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>FOSILL</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
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          <READ_SPEC>
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            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="102">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">CTACCAGG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
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          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
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        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
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          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.10.36</VERSION>
          <NOTES>Sequencer Application 1.3.8</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>92079.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:92079.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>New Tech Library</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12043</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>24900</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
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      <PRIMARY_ID>SRX116629</PRIMARY_ID>
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    <DESIGN>
      <DESIGN_DESCRIPTION>Multiple library types constructed and sequenced on Illumina platform</DESIGN_DESCRIPTION>
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      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Diana Tabbaa_NA12892 indexing_190</LIBRARY_NAME>
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        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="40000"/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>FOSILL</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
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            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="102">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">AGCAATTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
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          <READ_SPEC>
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            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
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          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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        <PIPE_SECTION section_name="base caller">
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          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
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          <NOTES>Sequencer Application 1.3.8</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
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    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
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      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:92078.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>New Tech Library</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G12043</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>24900</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX118348" center_name="BI" alias="105737.WR24645.Louise Williams_NA12892 indexing_630.B068MABXX110309.tagged_630.P">
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      <PRIMARY_ID>SRX118348</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">105737.WR24645.Louise Williams_NA12892 indexing_630.B068MABXX110309.tagged_630.P</SUBMITTER_ID>
      <UUID>c40002a2-7e4c-4407-9167-04e8db93aed6</UUID>
    </IDENTIFIERS>
    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Louise Williams_NA12892 indexing_630' containing sample GM12892</TITLE>
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        <PRIMARY_ID>SRP003680</PRIMARY_ID>
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        <EXTERNAL_ID namespace="Broad Institute" label="Homo sapiens">Homo sapiens CEPH_UTAH_Pedigree_1463_ltp_EKW_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
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      <DESIGN_DESCRIPTION>Multiple library types constructed and sequenced on Illumina platform</DESIGN_DESCRIPTION>
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      <DESIGN_DESCRIPTION>Multiple library types constructed and sequenced on Illumina platform</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS000092">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS000092</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN00801914</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">GM12892</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">NA12892</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Louise Williams_NA12892 indexing_393</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="40000"/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>FOSILL</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>210</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="102">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">CCAGTTAG</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>110</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-03-28 19:57:26.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.10.36</VERSION>
          <NOTES>Sequencer Application 1.3.8</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>88059.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:88059.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>New Tech Library</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G10664</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>24645</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX118354" center_name="BI" alias="105737.WR24645.Louise Williams_NA12892 indexing_375.B068MABXX110309.tagged_375.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX118354</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">105737.WR24645.Louise Williams_NA12892 indexing_375.B068MABXX110309.tagged_375.P</SUBMITTER_ID>
      <UUID>c74ecbd8-6728-4624-a8fc-02779b890adb</UUID>
    </IDENTIFIERS>
    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Louise Williams_NA12892 indexing_375' containing sample GM12892</TITLE>
    <STUDY_REF accession="SRP003680">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP003680</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA52009</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Homo sapiens">Homo sapiens CEPH_UTAH_Pedigree_1463_ltp_EKW_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Multiple library types constructed and sequenced on Illumina platform</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS000092">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS000092</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN00801914</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">GM12892</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">NA12892</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Louise Williams_NA12892 indexing_375</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="40000"/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>FOSILL</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>210</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="102">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">CATGCTTA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>110</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-03-28 19:57:26.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.10.36</VERSION>
          <NOTES>Sequencer Application 1.3.8</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>88052.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:88052.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>New Tech Library</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G10664</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>24645</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX118355" center_name="BI" alias="105737.WR24645.Louise Williams_NA12892 indexing_190.B068MABXX110309.tagged_190.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX118355</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">105737.WR24645.Louise Williams_NA12892 indexing_190.B068MABXX110309.tagged_190.P</SUBMITTER_ID>
      <UUID>9370cb15-f5f7-4b24-80c3-e4712024acb9</UUID>
    </IDENTIFIERS>
    <TITLE>Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Louise Williams_NA12892 indexing_190' containing sample GM12892</TITLE>
    <STUDY_REF accession="SRP003680">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP003680</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA52009</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Homo sapiens">Homo sapiens CEPH_UTAH_Pedigree_1463_ltp_EKW_WGS_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Multiple library types constructed and sequenced on Illumina platform</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS000092">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS000092</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN00801914</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">GM12892</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Coriell">NA12892</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Louise Williams_NA12892 indexing_190</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="40000"/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>FOSILL</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>210</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE default_length="8" base_coord="102">
              <BASECALL min_match="7" max_mismatch="1" match_edge="full">AGCAATTC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>110</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-03-28 19:57:26.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.10.36</VERSION>
          <NOTES>Sequencer Application 1.3.8</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>88053.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:88053.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>New Tech Library</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G10664</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>24645</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
</EXPERIMENT_SET>
