<?xml version="1.0" encoding="UTF-8"?>
<SAMPLE_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <SAMPLE center_name="JCVI" alias="HMPREF9003" accession="SRS116577">
    <IDENTIFIERS>
      <PRIMARY_ID>SRS116577</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioSample">SAMN00115044</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>MIGS Cultured Bacterial/Archaeal sample from Bifidobacterium dentium JCVIHMP022</TITLE>
    <SAMPLE_NAME>
      <TAXON_ID>553191</TAXON_ID>
      <SCIENTIFIC_NAME>Bifidobacterium dentium JCVIHMP022</SCIENTIFIC_NAME>
    </SAMPLE_NAME>
    <DESCRIPTION>454 FLX 8kb </DESCRIPTION>
    <SAMPLE_LINKS>
      <SAMPLE_LINK>
        <XREF_LINK>
          <DB>bioproject</DB>
          <ID>31395</ID>
        </XREF_LINK>
      </SAMPLE_LINK>
    </SAMPLE_LINKS>
    <SAMPLE_ATTRIBUTES>
      <SAMPLE_ATTRIBUTE>
        <TAG>finishing strategy (depth of coverage)</TAG>
        <VALUE>Level 2: High-Quality Draft244x;35</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>collection date</TAG>
        <VALUE>not determined</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>estimated_size</TAG>
        <VALUE>2637000</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>isol_growth_condt</TAG>
        <VALUE>not determined</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>specific host</TAG>
        <VALUE>Homo sapiens</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>project_type</TAG>
        <VALUE>Reference Genome</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>lat_lon</TAG>
        <VALUE>not determined</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>biome</TAG>
        <VALUE>terrestrial biome [ENVO:00000446]</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>misc_param: HMP body site</TAG>
        <VALUE>not determined</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>nucleic acid extraction</TAG>
        <VALUE>not determined</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>investigation type</TAG>
        <VALUE>missing</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>feature</TAG>
        <VALUE>human-associated habitat [ENVO:00009003]</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>host taxid</TAG>
        <VALUE>9606</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>project_name</TAG>
        <VALUE>Bifidobacterium dentium JCVIHMP022</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>CLC v. 3.10.47055</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>geo_loc_name</TAG>
        <VALUE>not determined</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>source_mat_id</TAG>
        <VALUE>ATCC 27679</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>material</TAG>
        <VALUE>biological product [ENVO:02000043]</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>ref_biomaterial</TAG>
        <VALUE>not determined</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>misc_param: HMP supersite</TAG>
        <VALUE>urogenital_tract</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>num_replicons</TAG>
        <VALUE>not determined</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sequencing method</TAG>
        <VALUE>454, Illumina</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sop</TAG>
        <VALUE>http://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>strain</TAG>
        <VALUE>JCVIHMP022</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>environmental package</TAG>
        <VALUE>missing</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>isolation-source</TAG>
        <VALUE>missing</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>BioSampleModel</TAG>
        <VALUE>MIGS.ba</VALUE>
      </SAMPLE_ATTRIBUTE>
    </SAMPLE_ATTRIBUTES>
  </SAMPLE>
</SAMPLE_SET>
