SRR068172 GSM605625_1 SRX028001 GSM605625: Gingeras_GM12878_cell SRR068173 GSM605627_1 SRX028002 GSM605627: Gingeras_GM12878_cytosol SRR068174 GSM605628_1 SRX028003 GSM605628: Gingeras_K562_nucleolus SRR068175 GSM605630_1 SRX028004 GSM605630: Gingeras_K562_cell SRR068176 GSM605632_1 SRX028005 GSM605632: Gingeras_K562_chromatin SRR068177 GSM605633_1 SRX028006 GSM605633: Gingeras_GM12878_nucleus SRR068178 GSM605634_1 SRX028007 GSM605634: Gingeras_K562_nucleoplasm SRR446301 GSM897069_1 SRX130220 GSM897069: CSHL_RnaSeq_HeLa-S3_cytosol_TAP-Only_shortTotal SRR446302 GSM897069_2 SRX130220 GSM897069: CSHL_RnaSeq_HeLa-S3_cytosol_TAP-Only_shortTotal SRR446303 GSM897070_1 SRX130221 GSM897070: CSHL_RnaSeq_SK-N-SH_RA_cell_TAP-Only_shortTotal SRR446304 GSM897070_2 SRX130221 GSM897070: CSHL_RnaSeq_SK-N-SH_RA_cell_TAP-Only_shortTotal SRR446305 GSM897071_1 SRX130222 GSM897071: CSHL_RnaSeq_H1-hESC_nucleus_TAP-Only_shortTotal SRR446306 GSM897072_1 SRX130223 GSM897072: CSHL_RnaSeq_H1-hESC_cytosol_TAP-Only_shortTotal SRR446307 GSM897073_1 SRX130224 GSM897073: CSHL_RnaSeq_H1-hESC_cell_TAP-Only_shortTotal SRR446308 GSM897073_2 SRX130224 GSM897073: CSHL_RnaSeq_H1-hESC_cell_TAP-Only_shortTotal SRR446309 GSM897074_1 SRX130225 GSM897074: CSHL_RnaSeq_AG04450_cell_TAP-Only_shortTotal SRR446310 GSM897074_2 SRX130225 GSM897074: CSHL_RnaSeq_AG04450_cell_TAP-Only_shortTotal SRR446311 GSM897075_1 SRX130226 GSM897075: CSHL_RnaSeq_HUVEC_nucleus_TAP-Only_shortTotal SRR446312 GSM897075_2 SRX130226 GSM897075: CSHL_RnaSeq_HUVEC_nucleus_TAP-Only_shortTotal SRR446313 GSM897076_1 SRX130227 GSM897076: CSHL_RnaSeq_NHEK_nucleus_TAP-Only_shortTotal SRR446314 GSM897076_2 SRX130227 GSM897076: CSHL_RnaSeq_NHEK_nucleus_TAP-Only_shortTotal SRR446315 GSM897077_1 SRX130228 GSM897077: CSHL_RnaSeq_BJ_cell_TAP-Only_shortTotal SRR446316 GSM897077_2 SRX130228 GSM897077: CSHL_RnaSeq_BJ_cell_TAP-Only_shortTotal SRR446317 GSM897078_1 SRX130229 GSM897078: CSHL_RnaSeq_NHEK_cytosol_TAP-Only_shortTotal SRR446318 GSM897078_2 SRX130229 GSM897078: CSHL_RnaSeq_NHEK_cytosol_TAP-Only_shortTotal SRR446319 GSM897079_1 SRX130230 GSM897079: CSHL_RnaSeq_HeLa-S3_cell_TAP-Only_shortTotal SRR446320 GSM897079_2 SRX130230 GSM897079: CSHL_RnaSeq_HeLa-S3_cell_TAP-Only_shortTotal SRR446321 GSM897080_1 SRX130231 GSM897080: CSHL_RnaSeq_HeLa-S3_nucleus_TAP-Only_shortTotal SRR446322 GSM897080_2 SRX130231 GSM897080: CSHL_RnaSeq_HeLa-S3_nucleus_TAP-Only_shortTotal SRR446323 GSM897081_1 SRX130232 GSM897081: CSHL_RnaSeq_MCF-7_cell_TAP-Only_shortTotal 36 0 Application Read Forward 1 SRR446324 GSM897081_2 SRX130232 GSM897081: CSHL_RnaSeq_MCF-7_cell_TAP-Only_shortTotal 36 0 Application Read Forward 1 SRR446325 GSM897081_3 SRX130232 GSM897081: CSHL_RnaSeq_MCF-7_cell_TAP-Only_shortTotal 101 0 Application Read Forward 1 instrument_model Illumina HiSeq 2000 SRR446326 GSM897081_4 SRX130232 GSM897081: CSHL_RnaSeq_MCF-7_cell_TAP-Only_shortTotal 101 0 Application Read Forward 1 instrument_model Illumina HiSeq 2000 SRR446327 GSM897082_1 SRX130233 GSM897082: CSHL_RnaSeq_HepG2_cytosol_TAP-Only_shortTotal SRR446328 GSM897082_2 SRX130233 GSM897082: CSHL_RnaSeq_HepG2_cytosol_TAP-Only_shortTotal SRR446329 GSM897083_1 SRX130234 GSM897083: CSHL_RnaSeq_A549_cell_TAP-Only_shortTotal 36 0 Application Read Forward 1 SRR446330 GSM897083_2 SRX130234 GSM897083: CSHL_RnaSeq_A549_cell_TAP-Only_shortTotal 36 0 Application Read Forward 1 SRR446331 GSM897083_3 SRX130234 GSM897083: CSHL_RnaSeq_A549_cell_TAP-Only_shortTotal 101 0 Application Read Forward 1 instrument_model Illumina HiSeq 2000 SRR446332 GSM897083_4 SRX130234 GSM897083: CSHL_RnaSeq_A549_cell_TAP-Only_shortTotal 101 0 Application Read Forward 1 instrument_model Illumina HiSeq 2000 SRR446333 GSM897084_1 SRX130235 GSM897084: CSHL_RnaSeq_HepG2_cell_TAP-Only_shortTotal SRR446334 GSM897084_2 SRX130235 GSM897084: CSHL_RnaSeq_HepG2_cell_TAP-Only_shortTotal SRR446335 GSM897085_1 SRX130236 GSM897085: CSHL_RnaSeq_HepG2_nucleus_TAP-Only_shortTotal SRR446336 GSM897085_2 SRX130236 GSM897085: CSHL_RnaSeq_HepG2_nucleus_TAP-Only_shortTotal SRR446337 GSM897086_1 SRX130237 GSM897086: CSHL_RnaSeq_NHEK_cell_TAP-Only_shortTotal SRR446338 GSM897086_2 SRX130237 GSM897086: CSHL_RnaSeq_NHEK_cell_TAP-Only_shortTotal SRR446388 GSM605629_1 SRX130247 GSM605629: CSHL_RnaSeq_K562_cytosol_TAP-Only_shortTotal SRR446389 GSM605629_2 SRX130247 GSM605629: CSHL_RnaSeq_K562_cytosol_TAP-Only_shortTotal SRR446390 GSM605635_1 SRX130248 GSM605635: CSHL_RnaSeq_K562_nucleus_TAP-Only_shortTotal SRR446391 GSM605635_2 SRX130248 GSM605635: CSHL_RnaSeq_K562_nucleus_TAP-Only_shortTotal SRR446392 GSM605625_11 SRX028001 GSM605625: Gingeras_GM12878_cell SRR446393 GSM605625_12 SRX028001 GSM605625: Gingeras_GM12878_cell SRR446394 GSM605627_11 SRX028002 GSM605627: Gingeras_GM12878_cytosol SRR446395 GSM605627_12 SRX028002 GSM605627: Gingeras_GM12878_cytosol SRR446396 GSM605628_11 SRX028003 GSM605628: Gingeras_K562_nucleolus SRR446397 GSM605628_12 SRX028003 GSM605628: Gingeras_K562_nucleolus SRR446398 GSM605630_11 SRX028004 GSM605630: Gingeras_K562_cell SRR446399 GSM605630_12 SRX028004 GSM605630: Gingeras_K562_cell SRR446400 GSM605633_11 SRX028006 GSM605633: Gingeras_GM12878_nucleus SRR446401 GSM605633_12 SRX028006 GSM605633: Gingeras_GM12878_nucleus SRR446402 GSM605634_11 SRX028007 GSM605634: Gingeras_K562_nucleoplasm SRR446403 GSM605634_12 SRX028007 GSM605634: Gingeras_K562_nucleoplasm SRR446404 GSM605632_11 SRX028005 GSM605632: Gingeras_K562_chromatin SRR446405 GSM605632_12 SRX028005 GSM605632: Gingeras_K562_chromatin SRR527584 GSM973661_1 SRX171070 GSM973661: CSHL_RnaSeq_A549_nucleus_CIP-TAP_shortTotal SRR527585 GSM973661_2 SRX171070 GSM973661: CSHL_RnaSeq_A549_nucleus_CIP-TAP_shortTotal SRR527586 GSM973662_1 SRX171071 GSM973662: CSHL_RnaSeq_CD34+_Mobilized_cell_TAP-Only_shortTotal SRR527587 GSM973663_1 SRX171072 GSM973663: CSHL_RnaSeq_SK-N-SH_nucleus_CIP-TAP_shortTotal SRR527588 GSM973663_2 SRX171072 GSM973663: CSHL_RnaSeq_SK-N-SH_nucleus_CIP-TAP_shortTotal SRR527589 GSM973664_1 SRX171073 GSM973664: CSHL_RnaSeq_A549_cytosol_shortTotal SRR527590 GSM973664_2 SRX171073 GSM973664: CSHL_RnaSeq_A549_cytosol_shortTotal SRR527591 GSM973665_1 SRX171074 GSM973665: CSHL_RnaSeq_SK-N-SH_nucleus_shortTotal SRR527592 GSM973665_2 SRX171074 GSM973665: CSHL_RnaSeq_SK-N-SH_nucleus_shortTotal SRR527593 GSM973666_1 SRX171075 GSM973666: CSHL_RnaSeq_SK-N-SH_cytosol_shortTotal SRR527594 GSM973666_2 SRX171075 GSM973666: CSHL_RnaSeq_SK-N-SH_cytosol_shortTotal SRR527595 GSM973667_1 SRX171076 GSM973667: CSHL_RnaSeq_SK-N-SH_cell_TAP-Only_shortTotal SRR527596 GSM973667_2 SRX171076 GSM973667: CSHL_RnaSeq_SK-N-SH_cell_TAP-Only_shortTotal SRR527597 GSM973668_1 SRX171077 GSM973668: CSHL_RnaSeq_A549_cell_shortTotal SRR527598 GSM973668_2 SRX171077 GSM973668: CSHL_RnaSeq_A549_cell_shortTotal SRR527599 GSM973669_1 SRX171078 GSM973669: CSHL_RnaSeq_A549_cytosol_CIP-TAP_shortTotal SRR527600 GSM973669_2 SRX171078 GSM973669: CSHL_RnaSeq_A549_cytosol_CIP-TAP_shortTotal SRR527601 GSM973670_1 SRX171079 GSM973670: CSHL_RnaSeq_IMR90_cytosol_CIP-TAP_shortTotal SRR527602 GSM973670_2 SRX171079 GSM973670: CSHL_RnaSeq_IMR90_cytosol_CIP-TAP_shortTotal SRR527603 GSM973671_1 SRX171080 GSM973671: CSHL_RnaSeq_IMR90_cytosol_shortTotal SRR527604 GSM973671_2 SRX171080 GSM973671: CSHL_RnaSeq_IMR90_cytosol_shortTotal SRR527605 GSM973672_1 SRX171081 GSM973672: CSHL_RnaSeq_MCF-7_cytosol_shortTotal SRR527606 GSM973672_2 SRX171081 GSM973672: CSHL_RnaSeq_MCF-7_cytosol_shortTotal SRR527607 GSM973673_1 SRX171082 GSM973673: CSHL_RnaSeq_IMR90_nucleus_CIP-TAP_shortTotal SRR527608 GSM973673_2 SRX171082 GSM973673: CSHL_RnaSeq_IMR90_nucleus_CIP-TAP_shortTotal SRR527609 GSM973674_1 SRX171083 GSM973674: CSHL_RnaSeq_A549_cell_CIP-TAP_shortTotal SRR527610 GSM973674_2 SRX171083 GSM973674: CSHL_RnaSeq_A549_cell_CIP-TAP_shortTotal SRR527611 GSM973675_1 SRX171084 GSM973675: CSHL_RnaSeq_SK-N-SH_cell_shortTotal SRR527612 GSM973675_2 SRX171084 GSM973675: CSHL_RnaSeq_SK-N-SH_cell_shortTotal SRR527613 GSM973676_1 SRX171085 GSM973676: CSHL_RnaSeq_MCF-7_cell_CIP-TAP_shortTotal SRR527614 GSM973676_2 SRX171085 GSM973676: CSHL_RnaSeq_MCF-7_cell_CIP-TAP_shortTotal SRR527615 GSM973677_1 SRX171086 GSM973677: CSHL_RnaSeq_SK-N-SH_cell_CIP-TAP_shortTotal SRR527616 GSM973677_2 SRX171086 GSM973677: CSHL_RnaSeq_SK-N-SH_cell_CIP-TAP_shortTotal SRR527617 GSM973678_1 SRX171087 GSM973678: CSHL_RnaSeq_IMR90_nucleus_shortTotal SRR527618 GSM973678_2 SRX171087 GSM973678: CSHL_RnaSeq_IMR90_nucleus_shortTotal SRR527619 GSM973679_1 SRX171088 GSM973679: CSHL_RnaSeq_IMR90_nucleus_TAP-Only_shortTotal SRR527620 GSM973679_2 SRX171088 GSM973679: CSHL_RnaSeq_IMR90_nucleus_TAP-Only_shortTotal SRR527621 GSM973680_1 SRX171089 GSM973680: CSHL_RnaSeq_IMR90_cell_TAP-Only_shortTotal SRR527622 GSM973680_2 SRX171089 GSM973680: CSHL_RnaSeq_IMR90_cell_TAP-Only_shortTotal SRR527623 GSM973681_1 SRX171090 GSM973681: CSHL_RnaSeq_MCF-7_cytosol_TAP-Only_shortTotal SRR527624 GSM973681_2 SRX171090 GSM973681: CSHL_RnaSeq_MCF-7_cytosol_TAP-Only_shortTotal SRR527625 GSM973682_1 SRX171091 GSM973682: CSHL_RnaSeq_MCF-7_nucleus_TAP-Only_shortTotal SRR527626 GSM973682_2 SRX171091 GSM973682: CSHL_RnaSeq_MCF-7_nucleus_TAP-Only_shortTotal SRR527627 GSM973683_1 SRX171092 GSM973683: CSHL_RnaSeq_A549_nucleus_shortTotal SRR527628 GSM973683_2 SRX171092 GSM973683: CSHL_RnaSeq_A549_nucleus_shortTotal SRR527629 GSM973684_1 SRX171093 GSM973684: CSHL_RnaSeq_A549_cytosol_TAP-Only_shortTotal SRR527630 GSM973684_2 SRX171093 GSM973684: CSHL_RnaSeq_A549_cytosol_TAP-Only_shortTotal SRR527631 GSM973685_1 SRX171094 GSM973685: CSHL_RnaSeq_A549_nucleus_TAP-Only_shortTotal SRR527632 GSM973685_2 SRX171094 GSM973685: CSHL_RnaSeq_A549_nucleus_TAP-Only_shortTotal SRR527633 GSM973686_1 SRX171095 GSM973686: CSHL_RnaSeq_IMR90_cytosol_TAP-Only_shortTotal SRR527634 GSM973686_2 SRX171095 GSM973686: CSHL_RnaSeq_IMR90_cytosol_TAP-Only_shortTotal SRR527635 GSM973687_1 SRX171096 GSM973687: CSHL_RnaSeq_MCF-7_nucleus_shortTotal SRR527636 GSM973687_2 SRX171096 GSM973687: CSHL_RnaSeq_MCF-7_nucleus_shortTotal SRR527637 GSM973688_1 SRX171097 GSM973688: CSHL_RnaSeq_SK-N-SH_cytosol_TAP-Only_shortTotal SRR527638 GSM973688_2 SRX171097 GSM973688: CSHL_RnaSeq_SK-N-SH_cytosol_TAP-Only_shortTotal SRR527639 GSM973689_1 SRX171098 GSM973689: CSHL_RnaSeq_SK-N-SH_nucleus_TAP-Only_shortTotal SRR527640 GSM973689_2 SRX171098 GSM973689: CSHL_RnaSeq_SK-N-SH_nucleus_TAP-Only_shortTotal SRR527641 GSM973690_1 SRX171099 GSM973690: CSHL_RnaSeq_MCF-7_cell_shortTotal SRR527642 GSM973690_2 SRX171099 GSM973690: CSHL_RnaSeq_MCF-7_cell_shortTotal SRR527643 GSM973691_1 SRX171100 GSM973691: CSHL_RnaSeq_IMR90_cell_shortTotal SRR527644 GSM973691_2 SRX171100 GSM973691: CSHL_RnaSeq_IMR90_cell_shortTotal SRR527645 GSM973692_1 SRX171101 GSM973692: CSHL_RnaSeq_SK-N-SH_cytosol_CIP-TAP_shortTotal SRR527646 GSM973692_2 SRX171101 GSM973692: CSHL_RnaSeq_SK-N-SH_cytosol_CIP-TAP_shortTotal SRR527647 GSM973693_1 SRX171102 GSM973693: CSHL_RnaSeq_IMR90_cell_CIP-TAP_shortTotal SRR527648 GSM973693_2 SRX171102 GSM973693: CSHL_RnaSeq_IMR90_cell_CIP-TAP_shortTotal SRR527649 GSM977028_1 SRX171103 GSM977028: CSHL_RnaSeq_hMSC-BM_cell_TAP-Only_shortTotal SRR527650 GSM977028_2 SRX171103 GSM977028: CSHL_RnaSeq_hMSC-BM_cell_TAP-Only_shortTotal SRR527651 GSM977029_1 SRX171104 GSM977029: CSHL_RnaSeq_H1-neurons_cell_TAP-Only_shortTotal SRR527652 GSM977029_2 SRX171104 GSM977029: CSHL_RnaSeq_H1-neurons_cell_TAP-Only_shortTotal SRR527653 GSM977030_1 SRX171105 GSM977030: CSHL_RnaSeq_H1-neurons_cell_CIP-TAP_shortTotal SRR527654 GSM977030_2 SRX171105 GSM977030: CSHL_RnaSeq_H1-neurons_cell_CIP-TAP_shortTotal SRR527655 GSM977031_1 SRX171106 GSM977031: CSHL_RnaSeq_H1-neurons_cell_shortTotal SRR527656 GSM977031_2 SRX171106 GSM977031: CSHL_RnaSeq_H1-neurons_cell_shortTotal SRR527657 GSM977032_1 SRX171107 GSM977032: CSHL_RnaSeq_GM12878_nucleolus_TAP-Only_shortTotal SRR527658 GSM977032_2 SRX171107 GSM977032: CSHL_RnaSeq_GM12878_nucleolus_TAP-Only_shortTotal SRR527659 GSM977033_1 SRX171108 GSM977033: CSHL_RnaSeq_HVMF_cell_TAP-Only_shortTotal SRR527660 GSM977033_2 SRX171108 GSM977033: CSHL_RnaSeq_HVMF_cell_TAP-Only_shortTotal SRR527661 GSM977034_1 SRX171109 GSM977034: CSHL_RnaSeq_NHDF_cell_TAP-Only_shortTotal SRR527662 GSM977034_2 SRX171109 GSM977034: CSHL_RnaSeq_NHDF_cell_TAP-Only_shortTotal SRR527663 GSM977035_1 SRX171110 GSM977035: CSHL_RnaSeq_HAoAF_cell_TAP-Only_shortTotal SRR527664 GSM977035_2 SRX171110 GSM977035: CSHL_RnaSeq_HAoAF_cell_TAP-Only_shortTotal SRR527665 GSM977036_1 SRX171111 GSM977036: CSHL_RnaSeq_HOB_cell_TAP-Only_shortTotal SRR527666 GSM977036_2 SRX171111 GSM977036: CSHL_RnaSeq_HOB_cell_TAP-Only_shortTotal SRR527667 GSM977037_1 SRX171112 GSM977037: CSHL_RnaSeq_HCH_cell_TAP-Only_shortTotal SRR527668 GSM977037_2 SRX171112 GSM977037: CSHL_RnaSeq_HCH_cell_TAP-Only_shortTotal SRR527669 GSM977038_1 SRX171113 GSM977038: CSHL_RnaSeq_HFDPC_cell_TAP-Only_shortTotal SRR527670 GSM977038_2 SRX171113 GSM977038: CSHL_RnaSeq_HFDPC_cell_TAP-Only_shortTotal SRR527671 GSM977039_1 SRX171114 GSM977039: CSHL_RnaSeq_SkMC_cell_TAP-Only_shortTotal SRR527672 GSM977039_2 SRX171114 GSM977039: CSHL_RnaSeq_SkMC_cell_TAP-Only_shortTotal SRR527673 GSM977040_1 SRX171115 GSM977040: CSHL_RnaSeq_HAoEC_cell_TAP-Only_shortTotal SRR527674 GSM977040_2 SRX171115 GSM977040: CSHL_RnaSeq_HAoEC_cell_TAP-Only_shortTotal SRR527675 GSM977041_1 SRX171116 GSM977041: CSHL_RnaSeq_hMSC-AT_cell_TAP-Only_shortTotal SRR527676 GSM977041_2 SRX171116 GSM977041: CSHL_RnaSeq_hMSC-AT_cell_TAP-Only_shortTotal SRR527677 GSM977042_1 SRX171117 GSM977042: CSHL_RnaSeq_GM12878_chromatin_TAP-Only_shortTotal SRR527678 GSM977042_2 SRX171117 GSM977042: CSHL_RnaSeq_GM12878_chromatin_TAP-Only_shortTotal SRR527679 GSM977043_1 SRX171118 GSM977043: CSHL_RnaSeq_CD20+_cell_TAP-Only_shortTotal SRR527680 GSM977043_2 SRX171118 GSM977043: CSHL_RnaSeq_CD20+_cell_TAP-Only_shortTotal SRR527681 GSM977044_1 SRX171119 GSM977044: CSHL_RnaSeq_Monocytes-CD14+_cell_TAP-Only_shortTotal SRR527682 GSM977044_2 SRX171119 GSM977044: CSHL_RnaSeq_Monocytes-CD14+_cell_TAP-Only_shortTotal SRR527683 GSM977045_1 SRX171120 GSM977045: CSHL_RnaSeq_NHEM.f_M2_cell_TAP-Only_shortTotal SRR527684 GSM977045_2 SRX171120 GSM977045: CSHL_RnaSeq_NHEM.f_M2_cell_TAP-Only_shortTotal SRR527685 GSM977046_1 SRX171121 GSM977046: CSHL_RnaSeq_HWP_cell_TAP-Only_shortTotal SRR527686 GSM977046_2 SRX171121 GSM977046: CSHL_RnaSeq_HWP_cell_TAP-Only_shortTotal SRR527687 GSM977047_1 SRX171122 GSM977047: CSHL_RnaSeq_NHEM_M2_cell_TAP-Only_shortTotal SRR527688 GSM977047_2 SRX171122 GSM977047: CSHL_RnaSeq_NHEM_M2_cell_TAP-Only_shortTotal SRR527689 GSM977048_1 SRX171123 GSM977048: CSHL_RnaSeq_hMSC-UC_cell_TAP-Only_shortTotal SRR527690 GSM977048_2 SRX171123 GSM977048: CSHL_RnaSeq_hMSC-UC_cell_TAP-Only_shortTotal SRR527691 GSM977049_1 SRX171124 GSM977049: CSHL_RnaSeq_HPC-PL_cell_TAP-Only_shortTotal SRR527692 GSM977049_2 SRX171124 GSM977049: CSHL_RnaSeq_HPC-PL_cell_TAP-Only_shortTotal SRR527693 GSM977050_1 SRX171125 GSM977050: CSHL_RnaSeq_HMEpC_cell_TAP-Only_shortTotal SRR527694 GSM977051_1 SRX171126 GSM977051: CSHL_RnaSeq_HSaVEC_cell_TAP-Only_shortTotal SRR527695 GSM977051_2 SRX171126 GSM977051: CSHL_RnaSeq_HSaVEC_cell_TAP-Only_shortTotal SRR527696 GSM977052_1 SRX171127 GSM977052: CSHL_RnaSeq_HPIEpC_cell_TAP-Only_shortTotal SRR527697 GSM977052_2 SRX171127 GSM977052: CSHL_RnaSeq_HPIEpC_cell_TAP-Only_shortTotal