<?xml version="1.0" encoding="UTF-8"?>
<RUN_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <RUN xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" alias="Experiment1.Run1" center_name="MSKCC" accession="SRR070954">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR070954</PRIMARY_ID>
      <SUBMITTER_ID namespace="MSKCC">Experiment1.Run1</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX028098">
      <IDENTIFIERS>
        <PRIMARY_ID>SRX028098</PRIMARY_ID>
        <SUBMITTER_ID namespace="MSKCC">Experiment1.1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Adapter</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL>TCAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_LABEL>barcode</READ_LABEL>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL read_group_tag="Ampicillin_cecum_1_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ACGAGTGCGT</BASECALL>
            <BASECALL read_group_tag="Ampicillin_cecum_2_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ACGCTCGACA</BASECALL>
            <BASECALL read_group_tag="Ampicillin_cecum_3_Experiment1" min_match="9" max_mismatch="1" match_edge="full">AGACGCACTC</BASECALL>
            <BASECALL read_group_tag="Ampicillin_cecum_4_Experiment1" min_match="9" max_mismatch="1" match_edge="full">AGCACTGTAG</BASECALL>
            <BASECALL read_group_tag="Ampicillin_cecum_5_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ATCAGACACG</BASECALL>
            <BASECALL read_group_tag="Ampicillin_cecum_6_Experiment1" min_match="9" max_mismatch="1" match_edge="full">CGTGTCTCTA</BASECALL>
            <BASECALL read_group_tag="Vancomycin_cecum_1_Experiment1" min_match="9" max_mismatch="1" match_edge="full">CTCGCGTGTC</BASECALL>
            <BASECALL read_group_tag="Vancomycin_cecum_2_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TAGTATCAGC</BASECALL>
            <BASECALL read_group_tag="Vancomycin_cecum_3_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TCTCTATGCG</BASECALL>
            <BASECALL read_group_tag="Vancomycin_cecum_4_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TGATACGTCT</BASECALL>
            <BASECALL read_group_tag="Vancomycin_cecum_5_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TACTGAGCTA</BASECALL>
            <BASECALL read_group_tag="Vancomycin_cecum_6_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ATATCGCGAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Primer</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL min_match="18" max_mismatch="1" match_edge="full">TGCTGCCTCCCGTAGGAGT</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>3</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <RELATIVE_ORDER follows_read_index="2"/>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </RUN>
  <RUN xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" alias="Experiment1.Run2" center_name="MSKCC" accession="SRR070998">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR070998</PRIMARY_ID>
      <SUBMITTER_ID namespace="MSKCC">Experiment1.Run2</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX029895">
      <IDENTIFIERS>
        <PRIMARY_ID>SRX029895</PRIMARY_ID>
        <SUBMITTER_ID namespace="MSKCC">Experiment1.2</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Adapter</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL>TCAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_LABEL>barcode</READ_LABEL>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL read_group_tag="Ampicillin_ileum_content_1_Experiment1" min_match="9" max_mismatch="1" match_edge="full">CTCGCGTGTC</BASECALL>
            <BASECALL read_group_tag="Ampicillin_ileum_content_2_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TAGTATCAGC</BASECALL>
            <BASECALL read_group_tag="Ampicillin_ileum_content_3_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TCTCTATGCG</BASECALL>
            <BASECALL read_group_tag="Ampicillin_ileum_content_4_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TGATACGTCT</BASECALL>
            <BASECALL read_group_tag="Ampicillin_ileum_content_5_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TACTGAGCTA</BASECALL>
            <BASECALL read_group_tag="Ampicillin_ileum_content_6_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ATATCGCGAG</BASECALL>
            <BASECALL read_group_tag="MNV_cecum_1_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ACGAGTGCGT</BASECALL>
            <BASECALL read_group_tag="MNV_cecum_2_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ACGCTCGACA</BASECALL>
            <BASECALL read_group_tag="MNV_cecum_3_Experiment1" min_match="9" max_mismatch="1" match_edge="full">AGACGCACTC</BASECALL>
            <BASECALL read_group_tag="MNV_cecum_4_Experiment1" min_match="9" max_mismatch="1" match_edge="full">AGCACTGTAG</BASECALL>
            <BASECALL read_group_tag="MNV_cecum_5_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ATCAGACACG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Primer</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL min_match="18" max_mismatch="1" match_edge="full">TGCTGCCTCCCGTAGGAGT</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>3</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <RELATIVE_ORDER follows_read_index="2"/>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </RUN>
  <RUN xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" alias="Experiment1.Run3" center_name="MSKCC" accession="SRR071063">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR071063</PRIMARY_ID>
      <SUBMITTER_ID namespace="MSKCC">Experiment1.Run3</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX029902">
      <IDENTIFIERS>
        <PRIMARY_ID>SRX029902</PRIMARY_ID>
        <SUBMITTER_ID namespace="MSKCC">Experiment1.3</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Adapter</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL>TCAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_LABEL>barcode</READ_LABEL>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL read_group_tag="Vancomycin_ileum_content_1_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ACGAGTGCGT</BASECALL>
            <BASECALL read_group_tag="Vancomycin_ileum_content_2_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ACGCTCGACA</BASECALL>
            <BASECALL read_group_tag="Vancomycin_ileum_content_3_Experiment1" min_match="9" max_mismatch="1" match_edge="full">AGACGCACTC</BASECALL>
            <BASECALL read_group_tag="Vancomycin_ileum_content_4_Experiment1" min_match="9" max_mismatch="1" match_edge="full">AGCACTGTAG</BASECALL>
            <BASECALL read_group_tag="Vancomycin_ileum_content_5_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ATCAGACACG</BASECALL>
            <BASECALL read_group_tag="Vancomycin_ileum_content_6_Experiment1" min_match="9" max_mismatch="1" match_edge="full">CGTGTCTCTA</BASECALL>
            <BASECALL read_group_tag="MNV_ileum_content_1_Experiment1" min_match="9" max_mismatch="1" match_edge="full">CTCGCGTGTC</BASECALL>
            <BASECALL read_group_tag="MNV_ileum_content_2_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TAGTATCAGC</BASECALL>
            <BASECALL read_group_tag="MNV_ileum_content_3_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TCTCTATGCG</BASECALL>
            <BASECALL read_group_tag="MNV_ileum_content_4_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TGATACGTCT</BASECALL>
            <BASECALL read_group_tag="MNV_ileum_content_5_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TACTGAGCTA</BASECALL>
            <BASECALL read_group_tag="MNV_ileum_content_6_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ATATCGCGAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Primer</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL min_match="18" max_mismatch="1" match_edge="full">TGCTGCCTCCCGTAGGAGT</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>3</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <RELATIVE_ORDER follows_read_index="2"/>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </RUN>
  <RUN xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" alias="Experiment1.Run4" center_name="MSKCC" accession="SRR071069">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR071069</PRIMARY_ID>
      <SUBMITTER_ID namespace="MSKCC">Experiment1.Run4</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX029904">
      <IDENTIFIERS>
        <PRIMARY_ID>SRX029904</PRIMARY_ID>
        <SUBMITTER_ID namespace="MSKCC">Experiment1.4</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Adapter</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL>TCAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_LABEL>barcode</READ_LABEL>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL read_group_tag="Ampicillin_recov_ileum_content_1_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ACGAGTGCGT</BASECALL>
            <BASECALL read_group_tag="Ampicillin_recov_ileum_content_2_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ACGCTCGACA</BASECALL>
            <BASECALL read_group_tag="Ampicillin_recov_ileum_content_3_Experiment1" min_match="9" max_mismatch="1" match_edge="full">AGACGCACTC</BASECALL>
            <BASECALL read_group_tag="Ampicillin_recov_ileum_content_4_Experiment1" min_match="9" max_mismatch="1" match_edge="full">AGCACTGTAG</BASECALL>
            <BASECALL read_group_tag="Ampicillin_recov_ileum_content_5_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ATCAGACACG</BASECALL>
            <BASECALL read_group_tag="Ampicillin_recov_ileum_content_6_Experiment1" min_match="9" max_mismatch="1" match_edge="full">CGTGTCTCTA</BASECALL>
            <BASECALL read_group_tag="Vancomycin_recov_ileum_content_1_Experiment1" min_match="9" max_mismatch="1" match_edge="full">CTCGCGTGTC</BASECALL>
            <BASECALL read_group_tag="Vancomycin_recov_ileum_content_2_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TAGTATCAGC</BASECALL>
            <BASECALL read_group_tag="Vancomycin_recov_ileum_content_3_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TCTCTATGCG</BASECALL>
            <BASECALL read_group_tag="Vancomycin_recov_ileum_content_4_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TGATACGTCT</BASECALL>
            <BASECALL read_group_tag="Vancomycin_recov_ileum_content_5_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TACTGAGCTA</BASECALL>
            <BASECALL read_group_tag="Vancomycin_recov_ileum_content_6_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ATATCGCGAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Primer</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL min_match="18" max_mismatch="1" match_edge="full">TGCTGCCTCCCGTAGGAGT</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>3</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <RELATIVE_ORDER follows_read_index="2"/>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </RUN>
  <RUN xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" alias="Experiment1.Run5" center_name="MSKCC" accession="SRR071072">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR071072</PRIMARY_ID>
      <SUBMITTER_ID namespace="MSKCC">Experiment1.Run5</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX029907">
      <IDENTIFIERS>
        <PRIMARY_ID>SRX029907</PRIMARY_ID>
        <SUBMITTER_ID namespace="MSKCC">Experiment1.5</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Adapter</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL>TCAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_LABEL>barcode</READ_LABEL>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL read_group_tag="Ampicillin_recov_cecum_1_Experiment1" min_match="9" max_mismatch="1" match_edge="full">CTCGCGTGTC</BASECALL>
            <BASECALL read_group_tag="Ampicillin_recov_cecum_2_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TAGTATCAGC</BASECALL>
            <BASECALL read_group_tag="Ampicillin_recov_cecum_3_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TCTCTATGCG</BASECALL>
            <BASECALL read_group_tag="Ampicillin_recov_cecum_4_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TGATACGTCT</BASECALL>
            <BASECALL read_group_tag="Ampicillin_recov_cecum_5_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TACTGAGCTA</BASECALL>
            <BASECALL read_group_tag="Ampicillin_recov_cecum_6_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ATATCGCGAG</BASECALL>
            <BASECALL read_group_tag="MNV_recov_ileum_content_1_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ACGAGTGCGT</BASECALL>
            <BASECALL read_group_tag="MNV_recov_ileum_content_2_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ACGCTCGACA</BASECALL>
            <BASECALL read_group_tag="MNV_recov_ileum_content_3_Experiment1" min_match="9" max_mismatch="1" match_edge="full">AGACGCACTC</BASECALL>
            <BASECALL read_group_tag="MNV_recov_ileum_content_4_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ATCAGACACG</BASECALL>
            <BASECALL read_group_tag="MNV_recov_ileum_content_5_Experiment1" min_match="9" max_mismatch="1" match_edge="full">CGTGTCTCTA</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Primer</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL min_match="18" max_mismatch="1" match_edge="full">TGCTGCCTCCCGTAGGAGT</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>3</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <RELATIVE_ORDER follows_read_index="2"/>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </RUN>
  <RUN xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" alias="Experiment1.Run6" center_name="MSKCC" accession="SRR071103">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR071103</PRIMARY_ID>
      <SUBMITTER_ID namespace="MSKCC">Experiment1.Run6</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX029913">
      <IDENTIFIERS>
        <PRIMARY_ID>SRX029913</PRIMARY_ID>
        <SUBMITTER_ID namespace="MSKCC">Experiment1.6</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Adapter</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL>TCAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_LABEL>barcode</READ_LABEL>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL read_group_tag="Vancomycin_recov_cecum_1_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ACGAGTGCGT</BASECALL>
            <BASECALL read_group_tag="Vancomycin_recov_cecum_2_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ACGCTCGACA</BASECALL>
            <BASECALL read_group_tag="Vancomycin_recov_cecum_3_Experiment1" min_match="9" max_mismatch="1" match_edge="full">AGACGCACTC</BASECALL>
            <BASECALL read_group_tag="Vancomycin_recov_cecum_4_Experiment1" min_match="9" max_mismatch="1" match_edge="full">AGCACTGTAG</BASECALL>
            <BASECALL read_group_tag="Vancomycin_recov_cecum_5_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ATCAGACACG</BASECALL>
            <BASECALL read_group_tag="Vancomycin_recov_cecum_6_Experiment1" min_match="9" max_mismatch="1" match_edge="full">CGTGTCTCTA</BASECALL>
            <BASECALL read_group_tag="MNV_recov_cecum_1_Experiment1" min_match="9" max_mismatch="1" match_edge="full">CTCGCGTGTC</BASECALL>
            <BASECALL read_group_tag="MNV_recov_cecum_2_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TAGTATCAGC</BASECALL>
            <BASECALL read_group_tag="MNV_recov_cecum_3_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TCTCTATGCG</BASECALL>
            <BASECALL read_group_tag="MNV_recov_cecum_4_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TACTGAGCTA</BASECALL>
            <BASECALL read_group_tag="MNV_recov_cecum_5_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ATATCGCGAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Primer</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL min_match="18" max_mismatch="1" match_edge="full">TGCTGCCTCCCGTAGGAGT</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>3</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <RELATIVE_ORDER follows_read_index="2"/>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </RUN>
  <RUN xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" alias="Experiment1.Run7" center_name="MSKCC" accession="SRR071105">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR071105</PRIMARY_ID>
      <SUBMITTER_ID namespace="MSKCC">Experiment1.Run7</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX029914">
      <IDENTIFIERS>
        <PRIMARY_ID>SRX029914</PRIMARY_ID>
        <SUBMITTER_ID namespace="MSKCC">Experiment1.7</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Adapter</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL>TCAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_LABEL>barcode</READ_LABEL>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL read_group_tag="Ampicillin_recov_feces_1_Experiment1" min_match="9" max_mismatch="1" match_edge="full">AGACGCACTC</BASECALL>
            <BASECALL read_group_tag="Ampicillin_recov_feces_2_Experiment1" min_match="9" max_mismatch="1" match_edge="full">AGCACTGTAG</BASECALL>
            <BASECALL read_group_tag="Ampicillin_recov_feces_3_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ATCAGACACG</BASECALL>
            <BASECALL read_group_tag="Ampicillin_recov_feces_4_Experiment1" min_match="9" max_mismatch="1" match_edge="full">CGTGTCTCTA</BASECALL>
            <BASECALL read_group_tag="Ampicillin_recov_feces_5_Experiment1" min_match="9" max_mismatch="1" match_edge="full">CTCGCGTGTC</BASECALL>
            <BASECALL read_group_tag="Ampicillin_recov_feces_6_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TAGTATCAGC</BASECALL>
            <BASECALL read_group_tag="Vancomycin_recov_feces_1_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TCTCTATGCG</BASECALL>
            <BASECALL read_group_tag="Vancomycin_recov_feces_2_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TGATACGTCT</BASECALL>
            <BASECALL read_group_tag="Vancomycin_recov_feces_3_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TACTGAGCTA</BASECALL>
            <BASECALL read_group_tag="Vancomycin_recov_feces_4_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ATATCGCGAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Primer</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL min_match="18" max_mismatch="1" match_edge="full">TGCTGCCTCCCGTAGGAGT</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>3</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <RELATIVE_ORDER follows_read_index="2"/>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </RUN>
  <RUN xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" alias="Experiment1.Run8" center_name="MSKCC" accession="SRR071109">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR071109</PRIMARY_ID>
      <SUBMITTER_ID namespace="MSKCC">Experiment1.Run8</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX029915">
      <IDENTIFIERS>
        <PRIMARY_ID>SRX029915</PRIMARY_ID>
        <SUBMITTER_ID namespace="MSKCC">Experiment1.8</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Adapter</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL>TCAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_LABEL>barcode</READ_LABEL>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL read_group_tag="Untreated_ileum_content_1_Experiment1" min_match="9" max_mismatch="1" match_edge="full">CTCGCGTGTC</BASECALL>
            <BASECALL read_group_tag="Untreated_ileum_content_2_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TAGTATCAGC</BASECALL>
            <BASECALL read_group_tag="Untreated_ileum_content_3_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TCTCTATGCG</BASECALL>
            <BASECALL read_group_tag="Untreated_ileum_content_4_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TGATACGTCT</BASECALL>
            <BASECALL read_group_tag="Untreated_ileum_content_5_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TACTGAGCTA</BASECALL>
            <BASECALL read_group_tag="Untreated_ileum_content_6_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ATATCGCGAG</BASECALL>
            <BASECALL read_group_tag="Untreated_ileum_wall_1_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ACGAGTGCGT</BASECALL>
            <BASECALL read_group_tag="Untreated_ileum_wall_2_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ACGCTCGACA</BASECALL>
            <BASECALL read_group_tag="Untreated_ileum_wall_3_Experiment1" min_match="9" max_mismatch="1" match_edge="full">AGACGCACTC</BASECALL>
            <BASECALL read_group_tag="Untreated_ileum_wall_4_Experiment1" min_match="9" max_mismatch="1" match_edge="full">AGCACTGTAG</BASECALL>
            <BASECALL read_group_tag="Untreated_ileum_wall_5_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ATCAGACACG</BASECALL>
            <BASECALL read_group_tag="Untreated_ileum_wall_6_Experiment1" min_match="9" max_mismatch="1" match_edge="full">CGTGTCTCTA</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Primer</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL min_match="18" max_mismatch="1" match_edge="full">TGCTGCCTCCCGTAGGAGT</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>3</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <RELATIVE_ORDER follows_read_index="2"/>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </RUN>
  <RUN xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" alias="Experiment1.Run9" center_name="MSKCC" accession="SRR071291">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR071291</PRIMARY_ID>
      <SUBMITTER_ID namespace="MSKCC">Experiment1.Run9</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX030156">
      <IDENTIFIERS>
        <PRIMARY_ID>SRX030156</PRIMARY_ID>
        <SUBMITTER_ID namespace="MSKCC">Experiment1.9</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Adapter</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL>TCAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_LABEL>barcode</READ_LABEL>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL read_group_tag="Ampicillin_feces_1_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ACGAGTGCGT</BASECALL>
            <BASECALL read_group_tag="Ampicillin_feces_2_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ACGCTCGACA</BASECALL>
            <BASECALL read_group_tag="Ampicillin_feces_3_Experiment1" min_match="9" max_mismatch="1" match_edge="full">AGACGCACTC</BASECALL>
            <BASECALL read_group_tag="Ampicillin_feces_4_Experiment1" min_match="9" max_mismatch="1" match_edge="full">AGCACTGTAG</BASECALL>
            <BASECALL read_group_tag="Ampicillin_feces_5_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ATCAGACACG</BASECALL>
            <BASECALL read_group_tag="Ampicillin_feces_6_Experiment1" min_match="9" max_mismatch="1" match_edge="full">CGTGTCTCTA</BASECALL>
            <BASECALL read_group_tag="Vancomycin_feces_1_Experiment1" min_match="9" max_mismatch="1" match_edge="full">CTCGCGTGTC</BASECALL>
            <BASECALL read_group_tag="Vancomycin_feces_2_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TAGTATCAGC</BASECALL>
            <BASECALL read_group_tag="Vancomycin_feces_3_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TCTCTATGCG</BASECALL>
            <BASECALL read_group_tag="Vancomycin_feces_4_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TGATACGTCT</BASECALL>
            <BASECALL read_group_tag="Vancomycin_feces_5_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TACTGAGCTA</BASECALL>
            <BASECALL read_group_tag="Vancomycin_feces_6_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ATATCGCGAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Primer</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL min_match="18" max_mismatch="1" match_edge="full">TGCTGCCTCCCGTAGGAGT</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>3</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <RELATIVE_ORDER follows_read_index="2"/>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </RUN>
  <RUN xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" alias="Experiment1.Run10" center_name="MSKCC" accession="SRR071292">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR071292</PRIMARY_ID>
      <SUBMITTER_ID namespace="MSKCC">Experiment1.Run10</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX030157">
      <IDENTIFIERS>
        <PRIMARY_ID>SRX030157</PRIMARY_ID>
        <SUBMITTER_ID namespace="MSKCC">Experiment1.10</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Adapter</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL>TCAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_LABEL>barcode</READ_LABEL>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL read_group_tag="MNV_cecum_6_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TGATACGTCT</BASECALL>
            <BASECALL read_group_tag="MNV_feces_1_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ACGAGTGCGT</BASECALL>
            <BASECALL read_group_tag="MNV_feces_2_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ACGCTCGACA</BASECALL>
            <BASECALL read_group_tag="MNV_feces_3_Experiment1" min_match="9" max_mismatch="1" match_edge="full">AGACGCACTC</BASECALL>
            <BASECALL read_group_tag="MNV_feces_4_Experiment1" min_match="9" max_mismatch="1" match_edge="full">AGCACTGTAG</BASECALL>
            <BASECALL read_group_tag="MNV_feces_5_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ATCAGACACG</BASECALL>
            <BASECALL read_group_tag="MNV_feces_6_Experiment1" min_match="9" max_mismatch="1" match_edge="full">CGTGTCTCTA</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Primer</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL min_match="18" max_mismatch="1" match_edge="full">TGCTGCCTCCCGTAGGAGT</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>3</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <RELATIVE_ORDER follows_read_index="2"/>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </RUN>
  <RUN xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" alias="Experiment1.Run11" center_name="MSKCC" accession="SRR071293">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR071293</PRIMARY_ID>
      <SUBMITTER_ID namespace="MSKCC">Experiment1.Run11</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX030158">
      <IDENTIFIERS>
        <PRIMARY_ID>SRX030158</PRIMARY_ID>
        <SUBMITTER_ID namespace="MSKCC">Experiment1.11</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Adapter</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL>TCAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_LABEL>barcode</READ_LABEL>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL read_group_tag="Untreated_cecum_1_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ACGAGTGCGT</BASECALL>
            <BASECALL read_group_tag="Untreated_cecum_2_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ACGCTCGACA</BASECALL>
            <BASECALL read_group_tag="Untreated_cecum_3_Experiment1" min_match="9" max_mismatch="1" match_edge="full">AGACGCACTC</BASECALL>
            <BASECALL read_group_tag="Untreated_cecum_4_Experiment1" min_match="9" max_mismatch="1" match_edge="full">AGCACTGTAG</BASECALL>
            <BASECALL read_group_tag="Untreated_cecum_5_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ATCAGACACG</BASECALL>
            <BASECALL read_group_tag="Untreated_cecum_6_Experiment1" min_match="9" max_mismatch="1" match_edge="full">CGTGTCTCTA</BASECALL>
            <BASECALL read_group_tag="Untreated_feces_1_Experiment1" min_match="9" max_mismatch="1" match_edge="full">CTCGCGTGTC</BASECALL>
            <BASECALL read_group_tag="Untreated_feces_2_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TAGTATCAGC</BASECALL>
            <BASECALL read_group_tag="Untreated_feces_3_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TCTCTATGCG</BASECALL>
            <BASECALL read_group_tag="Untreated_feces_4_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TGATACGTCT</BASECALL>
            <BASECALL read_group_tag="Untreated_feces_5_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TACTGAGCTA</BASECALL>
            <BASECALL read_group_tag="Untreated_feces_6_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ATATCGCGAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Primer</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL min_match="18" max_mismatch="1" match_edge="full">TGCTGCCTCCCGTAGGAGT</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>3</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <RELATIVE_ORDER follows_read_index="2"/>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </RUN>
  <RUN xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" alias="Experiment1.Run12" center_name="MSKCC" accession="SRR071294">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR071294</PRIMARY_ID>
      <SUBMITTER_ID namespace="MSKCC">Experiment1.Run12</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX030159">
      <IDENTIFIERS>
        <PRIMARY_ID>SRX030159</PRIMARY_ID>
        <SUBMITTER_ID namespace="MSKCC">Experiment1.12</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Adapter</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL>TCAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_LABEL>barcode</READ_LABEL>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL read_group_tag="Ampicillin_recov_ileum_wall_1_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TCTCTATGCG</BASECALL>
            <BASECALL read_group_tag="Ampicillin_recov_ileum_wall_2_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TGATACGTCT</BASECALL>
            <BASECALL read_group_tag="Ampicillin_recov_ileum_wall_3_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TACTGAGCTA</BASECALL>
            <BASECALL read_group_tag="Ampicillin_recov_ileum_wall_4_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ATATCGCGAG</BASECALL>
            <BASECALL read_group_tag="Vancomycin_recov_feces_5_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ACGAGTGCGT</BASECALL>
            <BASECALL read_group_tag="Vancomycin_recov_feces_6_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ACGCTCGACA</BASECALL>
            <BASECALL read_group_tag="MNV_recov_feces_1_Experiment1" min_match="9" max_mismatch="1" match_edge="full">AGACGCACTC</BASECALL>
            <BASECALL read_group_tag="MNV_recov_feces_2_Experiment1" min_match="9" max_mismatch="1" match_edge="full">AGCACTGTAG</BASECALL>
            <BASECALL read_group_tag="MNV_recov_feces_3_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ATCAGACACG</BASECALL>
            <BASECALL read_group_tag="MNV_recov_feces_4_Experiment1" min_match="9" max_mismatch="1" match_edge="full">CTCGCGTGTC</BASECALL>
            <BASECALL read_group_tag="MNV_recov_feces_5_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TAGTATCAGC</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Primer</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL min_match="18" max_mismatch="1" match_edge="full">TGCTGCCTCCCGTAGGAGT</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>3</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <RELATIVE_ORDER follows_read_index="2"/>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </RUN>
  <RUN xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" alias="Experiment1.Run13" center_name="MSKCC" accession="SRR071295">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR071295</PRIMARY_ID>
      <SUBMITTER_ID namespace="MSKCC">Experiment1.Run13</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX030160">
      <IDENTIFIERS>
        <PRIMARY_ID>SRX030160</PRIMARY_ID>
        <SUBMITTER_ID namespace="MSKCC">Experiment1.13</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Adapter</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL>TCAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_LABEL>barcode</READ_LABEL>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL read_group_tag="Ampicillin_recov_ileum_wall_5_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ACGAGTGCGT</BASECALL>
            <BASECALL read_group_tag="Ampicillin_recov_ileum_wall_6_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ACGCTCGACA</BASECALL>
            <BASECALL read_group_tag="Vancomycin_recov_ileum_wall_1_Experiment1" min_match="9" max_mismatch="1" match_edge="full">AGACGCACTC</BASECALL>
            <BASECALL read_group_tag="Vancomycin_recov_ileum_wall_2_Experiment1" min_match="9" max_mismatch="1" match_edge="full">AGCACTGTAG</BASECALL>
            <BASECALL read_group_tag="Vancomycin_recov_ileum_wall_3_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ATCAGACACG</BASECALL>
            <BASECALL read_group_tag="Vancomycin_recov_ileum_wall_4_Experiment1" min_match="9" max_mismatch="1" match_edge="full">CGTGTCTCTA</BASECALL>
            <BASECALL read_group_tag="Vancomycin_recov_ileum_wall_5_Experiment1" min_match="9" max_mismatch="1" match_edge="full">CTCGCGTGTC</BASECALL>
            <BASECALL read_group_tag="Vancomycin_recov_ileum_wall_6_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TAGTATCAGC</BASECALL>
            <BASECALL read_group_tag="MNV_recov_ileum_wall_1_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TCTCTATGCG</BASECALL>
            <BASECALL read_group_tag="MNV_recov_ileum_wall_2_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TGATACGTCT</BASECALL>
            <BASECALL read_group_tag="MNV_recov_ileum_wall_3_Experiment1" min_match="9" max_mismatch="1" match_edge="full">TACTGAGCTA</BASECALL>
            <BASECALL read_group_tag="MNV_recov_ileum_wall_6_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ATATCGCGAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Primer</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL min_match="18" max_mismatch="1" match_edge="full">TGCTGCCTCCCGTAGGAGT</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>3</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <RELATIVE_ORDER follows_read_index="2"/>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </RUN>
  <RUN xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" alias="Experiment1.Run14" center_name="MSKCC" accession="SRR071296">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR071296</PRIMARY_ID>
      <SUBMITTER_ID namespace="MSKCC">Experiment1.Run14</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX030161">
      <IDENTIFIERS>
        <PRIMARY_ID>SRX030161</PRIMARY_ID>
        <SUBMITTER_ID namespace="MSKCC">Experiment1.14</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Adapter</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL>TCAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_LABEL>barcode</READ_LABEL>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL read_group_tag="MNV_recov_ileum_content_6_Experiment1" min_match="9" max_mismatch="1" match_edge="full">AGACGCACTC</BASECALL>
            <BASECALL read_group_tag="MNV_recov_ileum_wall_4_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ACGAGTGCGT</BASECALL>
            <BASECALL read_group_tag="MNV_recov_ileum_wall_5_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ACGCTCGACA</BASECALL>
            <BASECALL read_group_tag="MNV_recov_cecum_6_Experiment1" min_match="9" max_mismatch="1" match_edge="full">AGCACTGTAG</BASECALL>
            <BASECALL read_group_tag="MNV_recov_feces_6_Experiment1" min_match="9" max_mismatch="1" match_edge="full">ATCAGACACG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Primer</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL min_match="18" max_mismatch="1" match_edge="full">TGCTGCCTCCCGTAGGAGT</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>3</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <RELATIVE_ORDER follows_read_index="2"/>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </RUN>
  <RUN xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" alias="Experiment2.Run1" center_name="MSKCC" accession="SRR071298">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR071298</PRIMARY_ID>
      <SUBMITTER_ID namespace="MSKCC">Experiment2.Run1</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX030165">
      <IDENTIFIERS>
        <PRIMARY_ID>SRX030165</PRIMARY_ID>
        <SUBMITTER_ID namespace="MSKCC">Experiment2.1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Adapter</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL>TCAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_LABEL>barcode</READ_LABEL>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL read_group_tag="Untreated_cecum_1_Experiment2" min_match="9" max_mismatch="1" match_edge="full">AGCACTGTAG</BASECALL>
            <BASECALL read_group_tag="Untreated_cecum_2_Experiment2" min_match="9" max_mismatch="1" match_edge="full">ATCAGACACG</BASECALL>
            <BASECALL read_group_tag="Untreated_cecum_3_Experiment2" min_match="9" max_mismatch="1" match_edge="full">CGTGTCTCTA</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Primer</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL min_match="18" max_mismatch="1" match_edge="full">TGCTGCCTCCCGTAGGAGT</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>3</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <RELATIVE_ORDER follows_read_index="2"/>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </RUN>
  <RUN xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" alias="Experiment2.Run2" center_name="MSKCC" accession="SRR071299">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR071299</PRIMARY_ID>
      <SUBMITTER_ID namespace="MSKCC">Experiment2.Run2</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX030168">
      <IDENTIFIERS>
        <PRIMARY_ID>SRX030168</PRIMARY_ID>
        <SUBMITTER_ID namespace="MSKCC">Experiment2.2</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Adapter</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL>TCAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_LABEL>barcode</READ_LABEL>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL read_group_tag="Ampicillin_ileum_1_Experiment2" min_match="9" max_mismatch="1" match_edge="full">ACGAGTGCGT</BASECALL>
            <BASECALL read_group_tag="Ampicillin_ileum_2_Experiment2" min_match="9" max_mismatch="1" match_edge="full">ACGCTCGACA</BASECALL>
            <BASECALL read_group_tag="Ampicillin_ileum_3_Experiment2" min_match="9" max_mismatch="1" match_edge="full">AGACGCACTC</BASECALL>
            <BASECALL read_group_tag="Ampicillin_ileum_recov_1_Experiment2" min_match="9" max_mismatch="1" match_edge="full">AGCACTGTAG</BASECALL>
            <BASECALL read_group_tag="Ampicillin_ileum_recov_2_Experiment2" min_match="9" max_mismatch="1" match_edge="full">ATCAGACACG</BASECALL>
            <BASECALL read_group_tag="Ampicillin_ileum_recov_3_Experiment2" min_match="9" max_mismatch="1" match_edge="full">CGTGTCTCTA</BASECALL>
            <BASECALL read_group_tag="Ampicillin_ileum_VRE_1_Experiment2" min_match="9" max_mismatch="1" match_edge="full">CTCGCGTGTC</BASECALL>
            <BASECALL read_group_tag="Ampicillin_ileum_VRE_2_Experiment2" min_match="9" max_mismatch="1" match_edge="full">TAGTATCAGC</BASECALL>
            <BASECALL read_group_tag="Ampicillin_ileum_VRE_3_Experiment2" min_match="9" max_mismatch="1" match_edge="full">TCTCTATGCG</BASECALL>
            <BASECALL read_group_tag="Ampicillin_ileum_recov_VRE_1_Experiment2" min_match="9" max_mismatch="1" match_edge="full">TGATACGTCT</BASECALL>
            <BASECALL read_group_tag="Ampicillin_ileum_recov_VRE_2_Experiment2" min_match="9" max_mismatch="1" match_edge="full">TACTGAGCTA</BASECALL>
            <BASECALL read_group_tag="Ampicillin_ileum_recov_VRE_3_Experiment2" min_match="9" max_mismatch="1" match_edge="full">ATATCGCGAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Primer</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL min_match="18" max_mismatch="1" match_edge="full">TGCTGCCTCCCGTAGGAGT</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>3</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <RELATIVE_ORDER follows_read_index="2"/>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </RUN>
  <RUN xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" alias="Experiment2.Run3" center_name="MSKCC" accession="SRR071300">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR071300</PRIMARY_ID>
      <SUBMITTER_ID namespace="MSKCC">Experiment2.Run3</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX030170">
      <IDENTIFIERS>
        <PRIMARY_ID>SRX030170</PRIMARY_ID>
        <SUBMITTER_ID namespace="MSKCC">Experiment2.3</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Adapter</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL>TCAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_LABEL>barcode</READ_LABEL>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL read_group_tag="Ampicillin_cecum_1_Experiment2" min_match="9" max_mismatch="1" match_edge="full">ACGAGTGCGT</BASECALL>
            <BASECALL read_group_tag="Ampicillin_cecum_2_Experiment2" min_match="9" max_mismatch="1" match_edge="full">ACGCTCGACA</BASECALL>
            <BASECALL read_group_tag="Ampicillin_cecum_3_Experiment2" min_match="9" max_mismatch="1" match_edge="full">AGACGCACTC</BASECALL>
            <BASECALL read_group_tag="Ampicillin_cecum_recov_1_Experiment2" min_match="9" max_mismatch="1" match_edge="full">AGCACTGTAG</BASECALL>
            <BASECALL read_group_tag="Ampicillin_cecum_recov_2_Experiment2" min_match="9" max_mismatch="1" match_edge="full">ATCAGACACG</BASECALL>
            <BASECALL read_group_tag="Ampicillin_cecum_recov_3_Experiment2" min_match="9" max_mismatch="1" match_edge="full">CGTGTCTCTA</BASECALL>
            <BASECALL read_group_tag="Ampicillin_cecum_VRE_1_Experiment2" min_match="9" max_mismatch="1" match_edge="full">CTCGCGTGTC</BASECALL>
            <BASECALL read_group_tag="Ampicillin_cecum_VRE_2_Experiment2" min_match="9" max_mismatch="1" match_edge="full">TAGTATCAGC</BASECALL>
            <BASECALL read_group_tag="Ampicillin_cecum_VRE_3_Experiment2" min_match="9" max_mismatch="1" match_edge="full">TCTCTATGCG</BASECALL>
            <BASECALL read_group_tag="Ampicillin_cecum_recov_VRE_1_Experiment2" min_match="9" max_mismatch="1" match_edge="full">TGATACGTCT</BASECALL>
            <BASECALL read_group_tag="Ampicillin_cecum_recov_VRE_2_Experiment2" min_match="9" max_mismatch="1" match_edge="full">TACTGAGCTA</BASECALL>
            <BASECALL read_group_tag="Ampicillin_cecum_recov_VRE_3_Experiment2" min_match="9" max_mismatch="1" match_edge="full">ATATCGCGAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Primer</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL min_match="18" max_mismatch="1" match_edge="full">TGCTGCCTCCCGTAGGAGT</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>3</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <RELATIVE_ORDER follows_read_index="2"/>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </RUN>
  <RUN xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" alias="Experiment2.Run4" center_name="MSKCC" accession="SRR071301">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR071301</PRIMARY_ID>
      <SUBMITTER_ID namespace="MSKCC">Experiment2.Run4</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX030171">
      <IDENTIFIERS>
        <PRIMARY_ID>SRX030171</PRIMARY_ID>
        <SUBMITTER_ID namespace="MSKCC">Experiment2.4</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Adapter</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL>TCAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_LABEL>barcode</READ_LABEL>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL read_group_tag="Untreated_ileum_1_Experiment2" min_match="9" max_mismatch="1" match_edge="full">ACGAGTGCGT</BASECALL>
            <BASECALL read_group_tag="Untreated_ileum_2_Experiment2" min_match="9" max_mismatch="1" match_edge="full">ACGCTCGACA</BASECALL>
            <BASECALL read_group_tag="Untreated_ileum_3_Experiment2" min_match="9" max_mismatch="1" match_edge="full">AGACGCACTC</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Primer</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL min_match="18" max_mismatch="1" match_edge="full">TGCTGCCTCCCGTAGGAGT</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>3</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <RELATIVE_ORDER follows_read_index="2"/>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </RUN>
  <RUN xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" alias="Experiment3 Run" center_name="MSKCC" accession="SRR071302">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR071302</PRIMARY_ID>
      <SUBMITTER_ID namespace="MSKCC">Experiment3 Run</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX030172">
      <IDENTIFIERS>
        <PRIMARY_ID>SRX030172</PRIMARY_ID>
        <SUBMITTER_ID namespace="MSKCC">Experiment3</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Adapter</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL>TCAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_LABEL>barcode</READ_LABEL>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL read_group_tag="Untreated_ileum_1_Experiment3" min_match="9" max_mismatch="1" match_edge="full">AATCGTGACTCGCA</BASECALL>
            <BASECALL read_group_tag="Untreated_ileum_2_Experiment3" min_match="9" max_mismatch="1" match_edge="full">ACGAGTGCTATCCA</BASECALL>
            <BASECALL read_group_tag="Untreated_ileum_3_Experiment3" min_match="9" max_mismatch="1" match_edge="full">ACTGATCCTAGTCA</BASECALL>
            <BASECALL read_group_tag="Untreated_ileum_4_Experiment3" min_match="9" max_mismatch="1" match_edge="full">AGAGTCCTGAGCCA</BASECALL>
            <BASECALL read_group_tag="Untreated_cecum_1_Experiment3" min_match="9" max_mismatch="1" match_edge="full">AGCGAGCTATCTCA</BASECALL>
            <BASECALL read_group_tag="Untreated_cecum_2_Experiment3" min_match="9" max_mismatch="1" match_edge="full">AGTACTGCAGGCCA</BASECALL>
            <BASECALL read_group_tag="Untreated_cecum_3_Experiment3" min_match="9" max_mismatch="1" match_edge="full">ACACACTATGGCCA</BASECALL>
            <BASECALL read_group_tag="Untreated_cecum_4_Experiment3" min_match="9" max_mismatch="1" match_edge="full">ACGATGCGACCACA</BASECALL>
            <BASECALL read_group_tag="Recovery_1week_ileum_1_Experiment3" min_match="9" max_mismatch="1" match_edge="full">AACGCACGCTAGCA</BASECALL>
            <BASECALL read_group_tag="Recovery_1week_ileum_2_Experiment3" min_match="9" max_mismatch="1" match_edge="full">ACCAGACGATGCCA</BASECALL>
            <BASECALL read_group_tag="Recovery_1week_ileum_3_Experiment3" min_match="9" max_mismatch="1" match_edge="full">ACGCTCATGGATCA</BASECALL>
            <BASECALL read_group_tag="Recovery_1week_ileum_4_Experiment3" min_match="9" max_mismatch="1" match_edge="full">ACTCACGGTATGCA</BASECALL>
            <BASECALL read_group_tag="Recovery_2weeks_ileum_1_Experiment3" min_match="9" max_mismatch="1" match_edge="full">AGACCGTCAGACCA</BASECALL>
            <BASECALL read_group_tag="Recovery_2weeks_ileum_2_Experiment3" min_match="9" max_mismatch="1" match_edge="full">ACAGACCACTCACA</BASECALL>
            <BASECALL read_group_tag="Recovery_2weeks_ileum_3_Experiment3" min_match="9" max_mismatch="1" match_edge="full">ACCAGCGACTAGCA</BASECALL>
            <BASECALL read_group_tag="Recovery_2weeks_ileum_4_Experiment3" min_match="9" max_mismatch="1" match_edge="full">ACGGATCGTCAGCA</BASECALL>
            <BASECALL read_group_tag="Recovery_4weeks_ileum_1_Experiment3" min_match="9" max_mismatch="1" match_edge="full">AGCTTGACAGCTCA</BASECALL>
            <BASECALL read_group_tag="Recovery_4weeks_ileum_2_Experiment3" min_match="9" max_mismatch="1" match_edge="full">ACCGCAGAGTCACA</BASECALL>
            <BASECALL read_group_tag="Recovery_4weeks_ileum_3_Experiment3" min_match="9" max_mismatch="1" match_edge="full">ACGGTGAGTGTCCA</BASECALL>
            <BASECALL read_group_tag="Recovery_4weeks_ileum_4_Experiment3" min_match="9" max_mismatch="1" match_edge="full">ACTCGATTCGATCA</BASECALL>
            <BASECALL read_group_tag="Recovery_8weeks_ileum_1_Experiment3" min_match="9" max_mismatch="1" match_edge="full">AGACTGCGTACTCA</BASECALL>
            <BASECALL read_group_tag="Recovery_8weeks_ileum_2_Experiment3" min_match="9" max_mismatch="1" match_edge="full">AGCAGTCGCGATCA</BASECALL>
            <BASECALL read_group_tag="Recovery_8weeks_ileum_3_Experiment3" min_match="9" max_mismatch="1" match_edge="full">AGGACGCACTGTCA</BASECALL>
            <BASECALL read_group_tag="Recovery_8weeks_ileum_4_Experiment3" min_match="9" max_mismatch="1" match_edge="full">AAGAGATGTCGACA</BASECALL>
            <BASECALL read_group_tag="Recovery_1week_cecum_1_Experiment3" min_match="9" max_mismatch="1" match_edge="full">ACAGCAGTGGTCCA</BASECALL>
            <BASECALL read_group_tag="Recovery_1week_cecum_2_Experiment3" min_match="9" max_mismatch="1" match_edge="full">ACTCGCACAGGACA</BASECALL>
            <BASECALL read_group_tag="Recovery_1week_cecum_3_Experiment3" min_match="9" max_mismatch="1" match_edge="full">AGAGAGCAAGTGCA</BASECALL>
            <BASECALL read_group_tag="Recovery_1week_cecum_4_Experiment3" min_match="9" max_mismatch="1" match_edge="full">AGCATATGAGAGCA</BASECALL>
            <BASECALL read_group_tag="Recovery_2weeks_cecum_1_Experiment3" min_match="9" max_mismatch="1" match_edge="full">AGGCTACACGACCA</BASECALL>
            <BASECALL read_group_tag="Recovery_2weeks_cecum_2_Experiment3" min_match="9" max_mismatch="1" match_edge="full">ACAGCTAGCTTGCA</BASECALL>
            <BASECALL read_group_tag="Recovery_2weeks_cecum_3_Experiment3" min_match="9" max_mismatch="1" match_edge="full">ACCTGTCTCTCTCA</BASECALL>
            <BASECALL read_group_tag="Recovery_2weeks_cecum_4_Experiment3" min_match="9" max_mismatch="1" match_edge="full">ACGTCTGTAGCACA</BASECALL>
            <BASECALL read_group_tag="Recovery_4weeks_cecum_1_Experiment3" min_match="9" max_mismatch="1" match_edge="full">AGAGCAAGAGCACA</BASECALL>
            <BASECALL read_group_tag="Recovery_4weeks_cecum_2_Experiment3" min_match="9" max_mismatch="1" match_edge="full">AGGTGTGATCGCCA</BASECALL>
            <BASECALL read_group_tag="Recovery_4weeks_cecum_3_Experiment3" min_match="9" max_mismatch="1" match_edge="full">AATCAGTCTCGTCA</BASECALL>
            <BASECALL read_group_tag="Recovery_4weeks_cecum_4_Experiment3" min_match="9" max_mismatch="1" match_edge="full">ACGACGTCTTAGCA</BASECALL>
            <BASECALL read_group_tag="Recovery_8weeks_cecum_1_Experiment3" min_match="9" max_mismatch="1" match_edge="full">ACGTGAGAGAATCA</BASECALL>
            <BASECALL read_group_tag="Recovery_8weeks_cecum_2_Experiment3" min_match="9" max_mismatch="1" match_edge="full">ACTGACAGCCATCA</BASECALL>
            <BASECALL read_group_tag="Recovery_8weeks_cecum_3_Experiment3" min_match="9" max_mismatch="1" match_edge="full">AGCGACTGTGCACA</BASECALL>
            <BASECALL read_group_tag="Recovery_8weeks_cecum_4_Experiment3" min_match="9" max_mismatch="1" match_edge="full">AGTACGCTCGAGCA</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Primer</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL min_match="18" max_mismatch="1" match_edge="full">TGCTGCCTCCCGTAGGAGT</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>3</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <RELATIVE_ORDER follows_read_index="2"/>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </RUN>
  <RUN xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" alias="patient A" center_name="MSKCC" accession="SRR073551">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR073551</PRIMARY_ID>
      <SUBMITTER_ID namespace="MSKCC">patient A</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX031753">
      <IDENTIFIERS>
        <PRIMARY_ID>SRX031753</PRIMARY_ID>
        <SUBMITTER_ID namespace="MSKCC">allo-HSCT transplant Patient_A</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Adapter</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL>TCAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_LABEL>barcode</READ_LABEL>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL read_group_tag="Patient_A_1_Experiment4" min_match="9" max_mismatch="1" match_edge="full">ACGAGTGCGT</BASECALL>
            <BASECALL read_group_tag="Patient_A_2_Experiment4" min_match="9" max_mismatch="1" match_edge="full">ACGCTCGACA</BASECALL>
            <BASECALL read_group_tag="Patient_A_3_Experiment4" min_match="9" max_mismatch="1" match_edge="full">AGACGCACTC</BASECALL>
            <BASECALL read_group_tag="Patient_A_4_Experiment4" min_match="9" max_mismatch="1" match_edge="full">AGCACTGTAG</BASECALL>
            <BASECALL read_group_tag="Patient_A_5_Experiment4" min_match="9" max_mismatch="1" match_edge="full">ATCAGACACG</BASECALL>
            <BASECALL read_group_tag="Patient_A_6_Experiment4" min_match="9" max_mismatch="1" match_edge="full">CGTGTCTCTA</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Primer</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL min_match="18" max_mismatch="1" match_edge="full">TGCTGCCTCCCGTAGGAGT</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>3</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <RELATIVE_ORDER follows_read_index="2"/>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </RUN>
  <RUN xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" alias="patient B and C" center_name="MSKCC" accession="SRR073552">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR073552</PRIMARY_ID>
      <SUBMITTER_ID namespace="MSKCC">patient B and C</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX031754">
      <IDENTIFIERS>
        <PRIMARY_ID>SRX031754</PRIMARY_ID>
        <SUBMITTER_ID namespace="MSKCC">allo-HSCT transplant Patient_B and C</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Adapter</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL>TCAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_LABEL>barcode</READ_LABEL>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL read_group_tag="Patient_B_1_Experiment4" min_match="9" max_mismatch="1" match_edge="full">ACGAGTGCGT</BASECALL>
            <BASECALL read_group_tag="Patient_B_2_Experiment4" min_match="9" max_mismatch="1" match_edge="full">ACGCTCGACA</BASECALL>
            <BASECALL read_group_tag="Patient_B_3_Experiment4" min_match="9" max_mismatch="1" match_edge="full">AGACGCACTC</BASECALL>
            <BASECALL read_group_tag="Patient_B_4_Experiment4" min_match="9" max_mismatch="1" match_edge="full">AGCACTGTAG</BASECALL>
            <BASECALL read_group_tag="Patient_C_1_Experiment4" min_match="9" max_mismatch="1" match_edge="full">ATCAGACACG</BASECALL>
            <BASECALL read_group_tag="Patient_C_2_Experiment4" min_match="9" max_mismatch="1" match_edge="full">CGTGTCTCTA</BASECALL>
            <BASECALL read_group_tag="Patient_C_3_Experiment4" min_match="9" max_mismatch="1" match_edge="full">CTCGCGTGTC</BASECALL>
            <BASECALL read_group_tag="Patient_C_4_Experiment4" min_match="9" max_mismatch="1" match_edge="full">TAGTATCAGC</BASECALL>
            <BASECALL read_group_tag="Patient_C_5_Experiment4" min_match="9" max_mismatch="1" match_edge="full">TCTCTATGCG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Primer</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL min_match="18" max_mismatch="1" match_edge="full">TGCTGCCTCCCGTAGGAGT</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>3</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <RELATIVE_ORDER follows_read_index="2"/>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </RUN>
  <RUN xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" alias="patient D" center_name="MSKCC" accession="SRR073554">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR073554</PRIMARY_ID>
      <SUBMITTER_ID namespace="MSKCC">patient D</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX031755">
      <IDENTIFIERS>
        <PRIMARY_ID>SRX031755</PRIMARY_ID>
        <SUBMITTER_ID namespace="MSKCC">allo-HSCT transplant Patient_D</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Adapter</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL>TCAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_LABEL>barcode</READ_LABEL>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL read_group_tag="Patient_D_1_Experiment4" min_match="9" max_mismatch="1" match_edge="full">CGTGTCTCTA</BASECALL>
            <BASECALL read_group_tag="Patient_D_2_Experiment4" min_match="9" max_mismatch="1" match_edge="full">CTCGCGTGTC</BASECALL>
            <BASECALL read_group_tag="Patient_D_3_Experiment4" min_match="9" max_mismatch="1" match_edge="full">TCTCTATGCG</BASECALL>
            <BASECALL read_group_tag="Patient_D_4_Experiment4" min_match="9" max_mismatch="1" match_edge="full">TAGTATCAGC</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Primer</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL min_match="18" max_mismatch="1" match_edge="full">TGCTGCCTCCCGTAGGAGT</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>3</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <RELATIVE_ORDER follows_read_index="2"/>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </RUN>
  <RUN xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" alias="patient D and E" center_name="MSKCC" accession="SRR073557">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR073557</PRIMARY_ID>
      <SUBMITTER_ID namespace="MSKCC">patient D and E</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX031756">
      <IDENTIFIERS>
        <PRIMARY_ID>SRX031756</PRIMARY_ID>
        <SUBMITTER_ID namespace="MSKCC">allo-HSCT transplant Patient_D and E</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Adapter</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL>TCAG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_LABEL>barcode</READ_LABEL>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL read_group_tag="Patient_D_5_Experiment4" min_match="9" max_mismatch="1" match_edge="full">ACGCTCGACA</BASECALL>
            <BASECALL read_group_tag="Patient_D_6_Experiment4" min_match="9" max_mismatch="1" match_edge="full">AGACGCACTC</BASECALL>
            <BASECALL read_group_tag="Patient_D_7_Experiment4" min_match="9" max_mismatch="1" match_edge="full">AGCACTGTAG</BASECALL>
            <BASECALL read_group_tag="Patient_E_1_Experiment4" min_match="9" max_mismatch="1" match_edge="full">ATCAGACACG</BASECALL>
            <BASECALL read_group_tag="Patient_E_2_Experiment4" min_match="9" max_mismatch="1" match_edge="full">CGTGTCTCTA</BASECALL>
            <BASECALL read_group_tag="Patient_E_3_Experiment4" min_match="9" max_mismatch="1" match_edge="full">CTCGCGTGTC</BASECALL>
            <BASECALL read_group_tag="Patient_E_4_Experiment4" min_match="9" max_mismatch="1" match_edge="full">TAGTATCAGC</BASECALL>
            <BASECALL read_group_tag="Patient_E_5_Experiment4" min_match="9" max_mismatch="1" match_edge="full">TCTCTATGCG</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>Primer</READ_TYPE>
          <EXPECTED_BASECALL_TABLE>
            <BASECALL min_match="18" max_mismatch="1" match_edge="full">TGCTGCCTCCCGTAGGAGT</BASECALL>
          </EXPECTED_BASECALL_TABLE>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>3</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <RELATIVE_ORDER follows_read_index="2"/>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
  </RUN>
</RUN_SET>
