<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="35 BACs pool-Shotgun" center_name="Center for Research " accession="SRX028785">
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      <PRIMARY_ID>SRX028785</PRIMARY_ID>
      <SUBMITTER_ID namespace="Center for Research ">35 BACs pool-Shotgun</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Titration run and two runs of the 35BACs-shotgun library</TITLE>
    <STUDY_REF accession="SRP003807">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP003807</PRIMARY_ID>
        <SUBMITTER_ID namespace="Center for Research ">C. melo BAC pools</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS117315</PRIMARY_ID>
          <SUBMITTER_ID namespace="Center for Research ">35 BACs pool</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
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        <LIBRARY_NAME>35 BACs_Shotgun</LIBRARY_NAME>
        <LIBRARY_STRATEGY>POOLCLONE</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
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            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
  <EXPERIMENT alias="35 BACs pool_Paired-end" center_name="Center for Research " accession="SRX028786">
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      <PRIMARY_ID>SRX028786</PRIMARY_ID>
      <SUBMITTER_ID namespace="Center for Research ">35 BACs pool_Paired-end</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>One and a half runs of the 35 BACs pool paired-end library</TITLE>
    <STUDY_REF accession="SRP003807">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP003807</PRIMARY_ID>
        <SUBMITTER_ID namespace="Center for Research ">C. melo BAC pools</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
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        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>35 BACs-Pair end</LIBRARY_NAME>
        <LIBRARY_STRATEGY>POOLCLONE</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="3000"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
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            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
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            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL>GGTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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      </SPOT_DESCRIPTOR>
    </DESIGN>
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      </LS454>
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  </EXPERIMENT>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX028787</PRIMARY_ID>
      <SUBMITTER_ID namespace="Center for Research ">23 BACs pool_Shotgun</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Full run of the 23 BACs pool shotgun library</TITLE>
    <STUDY_REF accession="SRP003807">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP003807</PRIMARY_ID>
        <SUBMITTER_ID namespace="Center for Research ">C. melo BAC pools</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
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        </IDENTIFIERS>
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        <LIBRARY_STRATEGY>POOLCLONE</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
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            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
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            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
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        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
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        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
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  </EXPERIMENT>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX028788</PRIMARY_ID>
      <SUBMITTER_ID namespace="Center for Research ">23 BACs pool paired-end</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Paired-end sequencing of the 23-BACs pool</TITLE>
    <STUDY_REF accession="SRP003807">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP003807</PRIMARY_ID>
        <SUBMITTER_ID namespace="Center for Research ">C. melo BAC pools</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
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      <DESIGN_DESCRIPTION/>
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          <PRIMARY_ID>SRS117316</PRIMARY_ID>
          <SUBMITTER_ID namespace="Center for Research ">23 BACs pool</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>23 BACs_Paired-end</LIBRARY_NAME>
        <LIBRARY_STRATEGY>POOLCLONE</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
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        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
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            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL>GGTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
</EXPERIMENT_SET>
