<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="ABP1 IP" center_name="Cold Spring Harbor Laboratory" accession="SRX033404">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX033404</PRIMARY_ID>
      <SUBMITTER_ID namespace="Cold Spring Harbor Laboratory">ABP1 IP</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>ABP1_ChIP</TITLE>
    <STUDY_REF accession="SRP004862">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP004862</PRIMARY_ID>
        <SUBMITTER_ID namespace="CSHL">CENP-B SAP1</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS173327">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS173327</PRIMARY_ID>
          <SUBMITTER_ID namespace="Cold Spring Harbor Laboratory">ABP1_ChIP</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>abp1_chip</LIBRARY_NAME>
        <LIBRARY_STRATEGY>ChIP-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>ChIP</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
  <EXPERIMENT alias="ABP1 wc" center_name="Cold Spring Harbor Laboratory" accession="SRX033405">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX033405</PRIMARY_ID>
      <SUBMITTER_ID namespace="Cold Spring Harbor Laboratory">ABP1 wc</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>ABP1 Whole Cell Extract</TITLE>
    <STUDY_REF accession="SRP004862">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP004862</PRIMARY_ID>
        <SUBMITTER_ID namespace="CSHL">CENP-B SAP1</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS150351">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS150351</PRIMARY_ID>
          <SUBMITTER_ID namespace="Cold Spring Harbor Laboratory">ABP1</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>abp1_input</LIBRARY_NAME>
        <LIBRARY_STRATEGY>ChIP-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
  <EXPERIMENT alias="CBH1 chip" center_name="Cold Spring Harbor Laboratory" accession="SRX033406">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX033406</PRIMARY_ID>
      <SUBMITTER_ID namespace="Cold Spring Harbor Laboratory">CBH1 chip</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>CBH1_ChIP</TITLE>
    <STUDY_REF accession="SRP004862">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP004862</PRIMARY_ID>
        <SUBMITTER_ID namespace="CSHL">CENP-B SAP1</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS173325">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS173325</PRIMARY_ID>
          <SUBMITTER_ID namespace="Cold Spring Harbor Laboratory">CBH1_ChIP</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>cbh1_chip</LIBRARY_NAME>
        <LIBRARY_STRATEGY>ChIP-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>ChIP</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
  <EXPERIMENT alias="CBH1 wc" center_name="Cold Spring Harbor Laboratory" accession="SRX033407">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX033407</PRIMARY_ID>
      <SUBMITTER_ID namespace="Cold Spring Harbor Laboratory">CBH1 wc</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>CBH1 Whole Cell Extract</TITLE>
    <STUDY_REF accession="SRP004862">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP004862</PRIMARY_ID>
        <SUBMITTER_ID namespace="CSHL">CENP-B SAP1</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS150352">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS150352</PRIMARY_ID>
          <SUBMITTER_ID namespace="Cold Spring Harbor Laboratory">CBH1</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>cbh1_input</LIBRARY_NAME>
        <LIBRARY_STRATEGY>ChIP-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
  <EXPERIMENT alias="SAP1_ChIP" center_name="Cold Spring Harbor Laboratory" accession="SRX045396">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX045396</PRIMARY_ID>
      <SUBMITTER_ID namespace="Cold Spring Harbor Laboratory">SAP1_ChIP</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>SAP1_ChIP</TITLE>
    <STUDY_REF accession="SRP004862"/>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS173322">
        <POOL>
          <MEMBER refname="SAP1 CHIP" member_name="SAP1 CHIP" accession="SRS173324">
            <READ_LABEL read_group_tag="SAP1 CHIP">barcode</READ_LABEL>
          </MEMBER>
          <MEMBER refname="SAP1 Whole Cell Extract" member_name="SAP1 Whole Cell Extract" accession="SRS150353">
            <READ_LABEL read_group_tag="SAP1 Whole Cell Extract">barcode</READ_LABEL>
          </MEMBER>
        </POOL>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>sap1_chip</LIBRARY_NAME>
        <LIBRARY_STRATEGY>ChIP-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>ChIP</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>barcode</READ_LABEL>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>BarCode</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL read_group_tag="SAP1 CHIP" min_match="5" max_mismatch="0" match_edge="full">CTCGT</BASECALL>
              <BASECALL read_group_tag="SAP1 Whole Cell Extract" min_match="5" max_mismatch="0" match_edge="full">TAGCT</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>51</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
</EXPERIMENT_SET>
