SRX038457 ECDEC7B_3KbPE 454 sequencing of ECDEC7B SRP005311 ECDEC7B SRS152618 ECDEC7B 4LP100007445 WGS GENOMIC RANDOM 0 Technical Read Adapter 1 1 Application Read Forward 5 2 Technical Read Linker TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA 3 Application Read Forward 454 GS FLX Titanium SRX144190 4LP100007445_20101223_experiment <STUDY_REF accession="SRP005311" refcenter="UMIGS" refname="ECDEC7B"> <IDENTIFIERS> <PRIMARY_ID>SRP005311</PRIMARY_ID> <SUBMITTER_ID namespace="UMIGS">ECDEC7B</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Construction Protocol Details</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="SRS152618" refcenter="UMIGS" refname="ECDEC7B"> <IDENTIFIERS> <PRIMARY_ID>SRS152618</PRIMARY_ID> <SUBMITTER_ID namespace="UMIGS">ECDEC7B</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>4LP100007445_20101223</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>Adapter</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <BASE_COORD>5</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>15</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>3</READ_INDEX> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>Linker</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL match_edge="full" max_mismatch="3">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL> <BASECALL match_edge="full" max_mismatch="3">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>4</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <RELATIVE_ORDER follows_read_index="3"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <LS454> <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL> </LS454> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT center_name="UMIGS" alias="4LP100007445_20101111_experiment" accession="SRX144191"> <IDENTIFIERS> <PRIMARY_ID>SRX144191</PRIMARY_ID> <SUBMITTER_ID namespace="UMIGS">4LP100007445_20101111_experiment</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP005311" refcenter="UMIGS" refname="ECDEC7B"> <IDENTIFIERS> <PRIMARY_ID>SRP005311</PRIMARY_ID> <SUBMITTER_ID namespace="UMIGS">ECDEC7B</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Construction Protocol Details</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="SRS152618" refcenter="UMIGS" refname="ECDEC7B"> <IDENTIFIERS> <PRIMARY_ID>SRS152618</PRIMARY_ID> <SUBMITTER_ID namespace="UMIGS">ECDEC7B</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>4LP100007445_20101111</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>Adapter</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <BASE_COORD>5</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>15</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>3</READ_INDEX> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>Linker</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL match_edge="full" max_mismatch="3">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL> <BASECALL match_edge="full" max_mismatch="3">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>4</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <RELATIVE_ORDER follows_read_index="3"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <LS454> <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL> </LS454> </PLATFORM> <PROCESSING/> </EXPERIMENT> </EXPERIMENT_SET>