<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="IL100011953" center_name="UMIGS" accession="SRX066193">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX066193</PRIMARY_ID>
      <SUBMITTER_ID namespace="UMIGS">IL100011953</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Illumina sequencing of HE45</TITLE>
    <STUDY_REF accession="SRP006892" refname="VCHE45" refcenter="UMIGS">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP006892</PRIMARY_ID>
        <SUBMITTER_ID namespace="UMIGS">VCHE45</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS210900" refname="VCHE45" refcenter="UMIGS">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS210900</PRIMARY_ID>
          <SUBMITTER_ID namespace="UMIGS">VCHE45</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>IL100011953</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>293</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>100</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
  <EXPERIMENT center_name="UMIGS" alias="VCHE45_3KbPE" accession="SRX066194">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX066194</PRIMARY_ID>
      <SUBMITTER_ID namespace="UMIGS">VCHE45_3KbPE</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>454 sequencing of VCHE45</TITLE>
    <STUDY_REF accession="SRP006892" refname="VCHE45" refcenter="UMIGS">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP006892</PRIMARY_ID>
        <SUBMITTER_ID namespace="UMIGS">VCHE45</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS210900" refname="VCHE45" refcenter="UMIGS">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS210900</PRIMARY_ID>
          <SUBMITTER_ID namespace="UMIGS">VCHE45</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>4LP100011679</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL max_mismatch="3" match_edge="full">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL>
              <BASECALL max_mismatch="3" match_edge="full">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
</EXPERIMENT_SET>
