<?xml version="1.0" encoding="UTF-8"?>
<SAMPLE_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <SAMPLE center_name="UMIGS" alias="SACIG1096" accession="SRS211520">
    <IDENTIFIERS>
      <PRIMARY_ID>SRS211520</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioSample">SAMN00622363</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>1096 StaphylococcusaureusCIG1096</TITLE>
    <SAMPLE_NAME>
      <TAXON_ID>931443</TAXON_ID>
      <SCIENTIFIC_NAME>Staphylococcus aureus subsp. aureus CIG1096</SCIENTIFIC_NAME>
    </SAMPLE_NAME>
    <SAMPLE_ATTRIBUTES>
      <SAMPLE_ATTRIBUTE>
        <TAG>strain</TAG>
        <VALUE>StaphylococcusaureusCIG1096</VALUE>
      </SAMPLE_ATTRIBUTE>
    </SAMPLE_ATTRIBUTES>
  </SAMPLE>
  <SAMPLE alias="sa_1096" accession="SRS663920">
    <IDENTIFIERS>
      <PRIMARY_ID>SRS663920</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioSample">SAMN01805445</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>MIGS Cultured Bacterial/Archaeal sample from Staphylococcus aureus CIG 1096</TITLE>
    <SAMPLE_NAME>
      <TAXON_ID>931443</TAXON_ID>
      <SCIENTIFIC_NAME>Staphylococcus aureus subsp. aureus CIG1096</SCIENTIFIC_NAME>
    </SAMPLE_NAME>
    <DESCRIPTION>Keywords: GSC:MIxS;MIGS:3.0</DESCRIPTION>
    <SAMPLE_LINKS>
      <SAMPLE_LINK>
        <XREF_LINK>
          <DB>bioproject</DB>
          <ID>60673</ID>
          <LABEL>PRJNA60673</LABEL>
        </XREF_LINK>
      </SAMPLE_LINK>
      <SAMPLE_LINK>
        <XREF_LINK>
          <DB>pubmed</DB>
          <ID>21541311</ID>
        </XREF_LINK>
      </SAMPLE_LINK>
      <SAMPLE_LINK>
        <URL_LINK>
          <LABEL>GSCID Genome analysis of the Staphylococcus aureus complicated infection group</LABEL>
          <URL>http://gscid.igs.umaryland.edu/wp.php?wp=genome_analysis_of_the_staphylococcus_aureus_complicated_infection_group</URL>
        </URL_LINK>
      </SAMPLE_LINK>
    </SAMPLE_LINKS>
    <SAMPLE_ATTRIBUTES>
      <SAMPLE_ATTRIBUTE>
        <TAG>host_sex</TAG>
        <VALUE>male</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>strain</TAG>
        <VALUE>CIG1096</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>host</TAG>
        <VALUE>Homo sapiens</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>env_package</TAG>
        <VALUE>missing</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>investigation_type</TAG>
        <VALUE>bacteria_archaea</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>lat_lon</TAG>
        <VALUE>35.9939 N 78.8989 W</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>geo_loc_name</TAG>
        <VALUE>USA:North Carolina, Durham</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>isol_growth_condt</TAG>
        <VALUE>not determined</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>age</TAG>
        <VALUE>47</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>environment (biome)</TAG>
        <VALUE>terrestrial biome [ENVO:00000446]</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>collection date</TAG>
        <VALUE>1994-09/2003-10</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sample collection device or method</TAG>
        <VALUE>venipuncture</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>finishing strategy (depth of coverage)</TAG>
        <VALUE>82.57</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>nucleic acid extraction</TAG>
        <VALUE>Phenol chloroform extraction</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>project name</TAG>
        <VALUE>Genome analysis of the Staphylococcus aureus complicated infection group</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>clonal complex</TAG>
        <VALUE>5</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>phenotype</TAG>
        <VALUE>Missing</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>environment (feature)</TAG>
        <VALUE>human-associated habitat [ENVO:00009003]</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>CA6.1 CVS</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>white blood cell count</TAG>
        <VALUE>7.199999809</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>ref_biomaterial</TAG>
        <VALUE>PMID: 21541311</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>hematocrit</TAG>
        <VALUE>35</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>environment (material)</TAG>
        <VALUE>blood [ENVO:02000020]</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sequencing method</TAG>
        <VALUE>454 and Illumina</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>disease status</TAG>
        <VALUE>bone and joint infection</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>num_replicons</TAG>
        <VALUE>not determined</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>outcome</TAG>
        <VALUE>recurrent</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>sub_species</TAG>
        <VALUE>aureus</VALUE>
      </SAMPLE_ATTRIBUTE>
      <SAMPLE_ATTRIBUTE>
        <TAG>BioSampleModel</TAG>
        <VALUE>MIGS.ba</VALUE>
      </SAMPLE_ATTRIBUTE>
    </SAMPLE_ATTRIBUTES>
  </SAMPLE>
</SAMPLE_SET>
