<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="trout est experiment" center_name="National Center for Cool and Cold Water Aquacultur" accession="SRX085156">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX085156</PRIMARY_ID>
      <SUBMITTER_ID namespace="National Center for Cool and Cold Water Aquacultur">trout est experiment</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Generation of a rainbow trout reference transcriptome for identifying genes responding to stressors of aquaculture environments</TITLE>
    <STUDY_REF accession="SRP007371">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP007371</PRIMARY_ID>
        <SUBMITTER_ID namespace="National Center for Cool and Cold Water Aquacultur">Trout_EST_2011</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Pooled mRNA from rainbow trout gill, brain, liver, spleen, kidney and muscle.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS213607">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS213607</PRIMARY_ID>
          <SUBMITTER_ID namespace="National Center for Cool and Cold Water Aquacultur">rainbow trout</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>NCCCWA Stress Transcriptome</LIBRARY_NAME>
        <LIBRARY_STRATEGY>EST</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>800</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
          <STEP_INDEX/>
          <PREV_STEP_INDEX/>
          <PROGRAM>454 Basecaller Base Caller</PROGRAM>
          <VERSION/>
        </PIPE_SECTION>
        <PIPE_SECTION>
          <STEP_INDEX/>
          <PREV_STEP_INDEX/>
          <PROGRAM>454 Basecaller Quality Scorer</PROGRAM>
          <VERSION/>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
  </EXPERIMENT>
</EXPERIMENT_SET>
