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<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="b_napus_14_20_exp" center_name="MSU-RTSF" accession="SRX090767">
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      <SUBMITTER_ID namespace="MSU-RTSF">b_napus_14_20_exp</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Brasicca napus 14-20 DAF</TITLE>
    <STUDY_REF accession="SRP007759">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP007759</PRIMARY_ID>
        <SUBMITTER_ID namespace="MSU-RTSF">brassica_napus_msu_454</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Total RNA from frozen tissue of B. napus was extracted using TRIzol Reagent and mRNA was purified using oligo dT purification kit. cDNA synthesis was with Creator SMART cDNA Library Construction Kit (Clontech), using LD PCR. First strand cDNA was synthesized from 2.0 *g mRNA using SUPERSCRIPT II reverse transcriptase (Invitrogen), and CDS III /3’ primer (5’tagaggccgaggcggccgacatgttttgtttttttttcttttttttttvn3’).  Sequencing with 454 Titanium.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS256234">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS256234</PRIMARY_ID>
          <SUBMITTER_ID namespace="MSU-RTSF">b_napus_14_20</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>FMEGV6E</LIBRARY_NAME>
        <LIBRARY_STRATEGY>EST</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
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          <SINGLE/>
        </LIBRARY_LAYOUT>
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        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>800</SPOT_LENGTH>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
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      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
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    <PROCESSING>
      <PIPELINE>
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          <STEP_INDEX/>
          <PREV_STEP_INDEX/>
          <PROGRAM>454 Basecaller Base Caller</PROGRAM>
          <VERSION/>
        </PIPE_SECTION>
        <PIPE_SECTION>
          <STEP_INDEX/>
          <PREV_STEP_INDEX/>
          <PROGRAM>454 Basecaller Quality Scorer</PROGRAM>
          <VERSION/>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
  </EXPERIMENT>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX090768</PRIMARY_ID>
      <SUBMITTER_ID namespace="MSU-RTSF">b_napus_21_25_exp</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Brasicca napus 21-25 DAF</TITLE>
    <STUDY_REF accession="SRP007759">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP007759</PRIMARY_ID>
        <SUBMITTER_ID namespace="MSU-RTSF">brassica_napus_msu_454</SUBMITTER_ID>
      </IDENTIFIERS>
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    <DESIGN>
      <DESIGN_DESCRIPTION>Total RNA from frozen tissue of B. napus was extracted using TRIzol Reagent and mRNA was purified using oligo dT purification kit. cDNA synthesis was with Creator SMART cDNA Library Construction Kit (Clontech), using LD PCR. First strand cDNA was synthesized from 2.0 *g mRNA using SUPERSCRIPT II reverse transcriptase (Invitrogen), and CDS III /3’ primer (5’tagaggccgaggcggccgacatgttttgtttttttttcttttttttttvn3’).  Sequencing with 454 Titanium.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS256235">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS256235</PRIMARY_ID>
          <SUBMITTER_ID namespace="MSU-RTSF">b_napus_21_25</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>FMRAAFF</LIBRARY_NAME>
        <LIBRARY_STRATEGY>EST</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
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          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
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          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
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    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
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          <STEP_INDEX/>
          <PREV_STEP_INDEX/>
          <PROGRAM>454 Basecaller Base Caller</PROGRAM>
          <VERSION/>
        </PIPE_SECTION>
        <PIPE_SECTION>
          <STEP_INDEX/>
          <PREV_STEP_INDEX/>
          <PROGRAM>454 Basecaller Quality Scorer</PROGRAM>
          <VERSION/>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
  </EXPERIMENT>
  <EXPERIMENT alias="b_napus_26_30_exp" center_name="MSU-RTSF" accession="SRX090769">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX090769</PRIMARY_ID>
      <SUBMITTER_ID namespace="MSU-RTSF">b_napus_26_30_exp</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Brasicca napus 26-30 DAF</TITLE>
    <STUDY_REF accession="SRP007759">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP007759</PRIMARY_ID>
        <SUBMITTER_ID namespace="MSU-RTSF">brassica_napus_msu_454</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Total RNA from frozen tissue of B. napus was extracted using TRIzol Reagent and mRNA was purified using oligo dT purification kit. cDNA synthesis was with Creator SMART cDNA Library Construction Kit (Clontech), using LD PCR. First strand cDNA was synthesized from 2.0 *g mRNA using SUPERSCRIPT II reverse transcriptase (Invitrogen), and CDS III /3’ primer (5’tagaggccgaggcggccgacatgttttgtttttttttcttttttttttvn3’).  Sequencing with 454 Titanium.</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS256236</PRIMARY_ID>
          <SUBMITTER_ID namespace="MSU-RTSF">b_napus_26_30</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>FO4H2WP</LIBRARY_NAME>
        <LIBRARY_STRATEGY>EST</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
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        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>800</SPOT_LENGTH>
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            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
          <STEP_INDEX/>
          <PREV_STEP_INDEX/>
          <PROGRAM>454 Basecaller Base Caller</PROGRAM>
          <VERSION/>
        </PIPE_SECTION>
        <PIPE_SECTION>
          <STEP_INDEX/>
          <PREV_STEP_INDEX/>
          <PROGRAM>454 Basecaller Quality Scorer</PROGRAM>
          <VERSION/>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
  </EXPERIMENT>
  <EXPERIMENT alias="b_napus_31_35_exp" center_name="MSU-RTSF" accession="SRX090771">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX090771</PRIMARY_ID>
      <SUBMITTER_ID namespace="MSU-RTSF">b_napus_31_35_exp</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Brasicca napus 31-35 DAF</TITLE>
    <STUDY_REF accession="SRP007759">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP007759</PRIMARY_ID>
        <SUBMITTER_ID namespace="MSU-RTSF">brassica_napus_msu_454</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Total RNA from frozen tissue of B. napus was extracted using TRIzol Reagent and mRNA was purified using oligo dT purification kit. cDNA synthesis was with Creator SMART cDNA Library Construction Kit (Clontech), using LD PCR. First strand cDNA was synthesized from 2.0 *g mRNA using SUPERSCRIPT II reverse transcriptase (Invitrogen), and CDS III /3’ primer (5’tagaggccgaggcggccgacatgttttgtttttttttcttttttttttvn3’).  Sequencing with 454 Titanium.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS256237">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS256237</PRIMARY_ID>
          <SUBMITTER_ID namespace="MSU-RTSF">b_napus_31_35</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>FO785IJ</LIBRARY_NAME>
        <LIBRARY_STRATEGY>EST</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
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          <SPOT_LENGTH>800</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
          <STEP_INDEX/>
          <PREV_STEP_INDEX/>
          <PROGRAM>454 Basecaller Base Caller</PROGRAM>
          <VERSION/>
        </PIPE_SECTION>
        <PIPE_SECTION>
          <STEP_INDEX/>
          <PREV_STEP_INDEX/>
          <PROGRAM>454 Basecaller Quality Scorer</PROGRAM>
          <VERSION/>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
  </EXPERIMENT>
</EXPERIMENT_SET>
