<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT accession="SRX1048721" alias="Whole organism H.vul AEP">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX1048721</PRIMARY_ID>
      <SUBMITTER_ID namespace="inStem">Whole organism H.vul AEP</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Whole organism H.vul AEP</TITLE>
    <STUDY_REF accession="SRP011569">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP011569</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"RNA from H. vulgaris AEP was isolated from uncut controls only using Trizol as per manufacturer's instructions.Five micrograms of total RNA was used to generate small RNA libraries using TruSeq small RNA kit from Illumina as per manufacturer's protocol. Briefly specific 5' and 3' adapters were ligated to RNA; ligated products were reverse-transcribed and amplified by polymerase chain reaction (PCR). PCR products were separated using polyacrylamide gel electrophoresis, and products corresponding to adapter-ligated 18-35-nt-long RNAs (140-160 bp) were eluted from the gel."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS953052">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS953052</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03761787</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Whole organism H.vul AEP</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>36</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer IIx</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX1048722" alias="Whole organism H.vul Ind-Pune">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX1048722</PRIMARY_ID>
      <SUBMITTER_ID namespace="inStem">Whole organism H.vul Ind-Pune</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Whole organism H.vul Ind-Pune</TITLE>
    <STUDY_REF accession="SRP011569">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP011569</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"RNA from H. vulgaris Ind-Pune was isolated from uncut controls only using Trizol as per manufacturer's instructions.Five micrograms of total RNA was used to generate small RNA libraries using TruSeq small RNA kit from Illumina as per manufacturer's protocol. Briefly specific 5' and 3' adapters were ligated to RNA; ligated products were reverse-transcribed and amplified by polymerase chain reaction (PCR). PCR products were separated using polyacrylamide gel electrophoresis, and products corresponding to adapter-ligated 18-35-nt-long RNAs (140-160 bp) were eluted from the gel."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS953051">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS953051</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN03761788</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Whole organism H.vul Ind-Pune</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>36</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer IIx</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX1048723" alias="1 day foot regenerating head set 1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX1048723</PRIMARY_ID>
      <SUBMITTER_ID namespace="inStem">1 day foot regenerating head set 1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>1 day foot regenerating head set 1</TITLE>
    <STUDY_REF accession="SRP011569">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP011569</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Hydra magnipapillata RNA was isolated from polyps regenerating head from foot.RNA was isolated from ~100 hydra regenerating head from foot region at time 1day using Trizol as per manufacturer's instructions. Five micrograms of total RNA was used to generate small RNA libraries using TruSeq small RNA kit from Illumina as per manufacturer's protocol. Briefly specific 5' and 3' adapters were ligated to RNA; ligated products were reverse-transcribed and amplified by polymerase chain reaction (PCR). PCR products were separated using polyacrylamide gel electrophoresis, and products corresponding to adapter-ligated 18-35-nt-long RNAs (140-160 bp) were eluted from the gel."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS300838">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS300838</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN00828958</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>1 day foot regenerating head set 1</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>52</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX1048724" alias="1 day foot regenerating head set 2">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX1048724</PRIMARY_ID>
      <SUBMITTER_ID namespace="inStem">1 day foot regenerating head set 2</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>1 day foot regenerating head set 2</TITLE>
    <STUDY_REF accession="SRP011569">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP011569</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Hydra magnipapillata RNA was isolated from polyps regenerating head from foot.RNA was isolated from ~100 hydra regenerating head from foot region at time 1day using Trizol as per manufacturer's instructions. Five micrograms of total RNA was used to generate small RNA libraries using TruSeq small RNA kit from Illumina as per manufacturer's protocol. Briefly specific 5' and 3' adapters were ligated to RNA; ligated products were reverse-transcribed and amplified by polymerase chain reaction (PCR). PCR products were separated using polyacrylamide gel electrophoresis, and products corresponding to adapter-ligated 18-35-nt-long RNAs (140-160 bp) were eluted from the gel."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS300838">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS300838</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN00828958</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>1 day foot regenerating head set 2</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>52</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX1048725" alias="3 hour foot regenerating head set 1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX1048725</PRIMARY_ID>
      <SUBMITTER_ID namespace="inStem">3 hour foot regenerating head set 1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>3 hour foot regenerating head set 1</TITLE>
    <STUDY_REF accession="SRP011569">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP011569</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Hydra magnipapillata RNA was isolated from polyps regenerating head from foot.RNA was isolated from ~100 hydra regenerating head from foot region at time 3hours using Trizol as per manufacturer's instructions. Five micrograms of total RNA was used to generate small RNA libraries using TruSeq small RNA kit from Illumina as per manufacturer's protocol. Briefly specific 5' and 3' adapters were ligated to RNA; ligated products were reverse-transcribed and amplified by polymerase chain reaction (PCR). PCR products were separated using polyacrylamide gel electrophoresis, and products corresponding to adapter-ligated 18-35-nt-long RNAs (140-160 bp) were eluted from the gel."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS300838">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS300838</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN00828958</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>3 hour foot regenerating head set 1</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>52</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX1048726" alias="3 hour foot regenerating head set 2">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX1048726</PRIMARY_ID>
      <SUBMITTER_ID namespace="inStem">3 hour foot regenerating head set 2</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>3 hour foot regenerating head set 2</TITLE>
    <STUDY_REF accession="SRP011569">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP011569</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Hydra magnipapillata RNA was isolated from polyps regenerating head from foot.RNA was isolated from ~100 hydra regenerating head from foot region at time 3hours using Trizol as per manufacturer's instructions. Five micrograms of total RNA was used to generate small RNA libraries using TruSeq small RNA kit from Illumina as per manufacturer's protocol. Briefly specific 5' and 3' adapters were ligated to RNA; ligated products were reverse-transcribed and amplified by polymerase chain reaction (PCR). PCR products were separated using polyacrylamide gel electrophoresis, and products corresponding to adapter-ligated 18-35-nt-long RNAs (140-160 bp) were eluted from the gel."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS300838">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS300838</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN00828958</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>3 hour foot regenerating head set 2</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>52</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX1048727" alias="Uncut set 1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX1048727</PRIMARY_ID>
      <SUBMITTER_ID namespace="inStem">Uncut set 1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Uncut set 1</TITLE>
    <STUDY_REF accession="SRP011569">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP011569</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Hydra magnipapillata RNA was isolated from uncut hydra as control. RNA was isolated from ~100 hydra regenerating head from foot region using Trizol as per manufacturer's instructions. Five micrograms of total RNA was used to generate small RNA libraries using TruSeq small RNA kit from Illumina as per manufacturer's protocol. Briefly specific 5' and 3' adapters were ligated to RNA; ligated products were reverse-transcribed and amplified by polymerase chain reaction (PCR). PCR products were separated using polyacrylamide gel electrophoresis, and products corresponding to adapter-ligated 18-35-nt-long RNAs (140-160 bp) were eluted from the gel."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS300838">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS300838</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN00828958</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Uncut set 1</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>52</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX1048728" alias="Uncut set 2">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX1048728</PRIMARY_ID>
      <SUBMITTER_ID namespace="inStem">Uncut set 2</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Uncut set 2</TITLE>
    <STUDY_REF accession="SRP011569">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP011569</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Hydra magnipapillata RNA was isolated from uncut hydra as control. RNA was isolated from ~100 hydra regenerating head from foot region using Trizol as per manufacturer's instructions. Five micrograms of total RNA was used to generate small RNA libraries using TruSeq small RNA kit from Illumina as per manufacturer's protocol. Briefly specific 5' and 3' adapters were ligated to RNA; ligated products were reverse-transcribed and amplified by polymerase chain reaction (PCR). PCR products were separated using polyacrylamide gel electrophoresis, and products corresponding to adapter-ligated 18-35-nt-long RNAs (140-160 bp) were eluted from the gel."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS300838">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS300838</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN00828958</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Uncut set 2</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>52</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX1048729" alias="2 day foot regenerating head set 1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX1048729</PRIMARY_ID>
      <SUBMITTER_ID namespace="inStem">2 day foot regenerating head set 1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>2 day foot regenerating head set 1</TITLE>
    <STUDY_REF accession="SRP011569">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP011569</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Hydra magnipapillata RNA was isolated from polyps regenerating head from foot.RNA was isolated from ~100 hydra regenerating head from foot region at time 2day using Trizol as per manufacturer's instructions. Five micrograms of total RNA was used to generate small RNA libraries using TruSeq small RNA kit from Illumina as per manufacturer's protocol. Briefly specific 5' and 3' adapters were ligated to RNA; ligated products were reverse-transcribed and amplified by polymerase chain reaction (PCR). PCR products were separated using polyacrylamide gel electrophoresis, and products corresponding to adapter-ligated 18-35-nt-long RNAs (140-160 bp) were eluted from the gel."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS300838">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS300838</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN00828958</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2 day foot regenerating head set 1</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>52</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX1048730" alias="2 day foot regenerating head set 2">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX1048730</PRIMARY_ID>
      <SUBMITTER_ID namespace="inStem">2 day foot regenerating head set 2</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>2 day foot regenerating head set 2</TITLE>
    <STUDY_REF accession="SRP011569">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP011569</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Hydra magnipapillata RNA was isolated from polyps regenerating head from foot.RNA was isolated from ~100 hydra regenerating head from foot region at time 2day using Trizol as per manufacturer's instructions. Five micrograms of total RNA was used to generate small RNA libraries using TruSeq small RNA kit from Illumina as per manufacturer's protocol. Briefly specific 5' and 3' adapters were ligated to RNA; ligated products were reverse-transcribed and amplified by polymerase chain reaction (PCR). PCR products were separated using polyacrylamide gel electrophoresis, and products corresponding to adapter-ligated 18-35-nt-long RNAs (140-160 bp) were eluted from the gel."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS300838">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS300838</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN00828958</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>2 day foot regenerating head set 2</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>52</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX1048731" alias="3 day foot regenerating head set 1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX1048731</PRIMARY_ID>
      <SUBMITTER_ID namespace="inStem">3 day foot regenerating head set 1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>3 day foot regenerating head set 1</TITLE>
    <STUDY_REF accession="SRP011569">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP011569</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Hydra magnipapillata RNA was isolated from polyps regenerating head from foot.RNA was isolated from ~100 hydra regenerating head from foot region at time 3day using Trizol as per manufacturer's instructions. Five micrograms of total RNA was used to generate small RNA libraries using TruSeq small RNA kit from Illumina as per manufacturer's protocol. Briefly specific 5' and 3' adapters were ligated to RNA; ligated products were reverse-transcribed and amplified by polymerase chain reaction (PCR). PCR products were separated using polyacrylamide gel electrophoresis, and products corresponding to adapter-ligated 18-35-nt-long RNAs (140-160 bp) were eluted from the gel."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS300838">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS300838</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN00828958</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>3 day foot regenerating head set 1</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>52</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX1048732" alias="3 day foot regenerating head set 2">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX1048732</PRIMARY_ID>
      <SUBMITTER_ID namespace="inStem">3 day foot regenerating head set 2</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>3 day foot regenerating head set 2</TITLE>
    <STUDY_REF accession="SRP011569">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP011569</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>"Hydra magnipapillata RNA was isolated from polyps regenerating head from foot.RNA was isolated from ~100 hydra regenerating head from foot region at time 3day using Trizol as per manufacturer's instructions. Five micrograms of total RNA was used to generate small RNA libraries using TruSeq small RNA kit from Illumina as per manufacturer's protocol. Briefly specific 5' and 3' adapters were ligated to RNA; ligated products were reverse-transcribed and amplified by polymerase chain reaction (PCR). PCR products were separated using polyacrylamide gel electrophoresis, and products corresponding to adapter-ligated 18-35-nt-long RNAs (140-160 bp) were eluted from the gel."</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS300838">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS300838</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN00828958</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>3 day foot regenerating head set 2</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>52</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
