<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="IWG_SHDPJK.AWT2-1_1pA" accession="SRX150312" center_name="BCM">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX150312</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCM">IWG_SHDPJK.AWT2-1_1pA</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>WGS sequencing of O.aries sample AWT2</TITLE>
    <STUDY_REF accession="SRP013208">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP013208</PRIMARY_ID>
        <SUBMITTER_ID namespace="BCM-HGSC">WG_SHDPJK</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS335704">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS335704</PRIMARY_ID>
          <SUBMITTER_ID namespace="BCM">OARI_AWT2</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>IWG_SHDPJK.AWT2-1_1pA</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="175"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
          <STEP_INDEX/>
          <PREV_STEP_INDEX/>
          <PROGRAM>Casava</PROGRAM>
          <VERSION>1.8</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION>
          <STEP_INDEX/>
          <PREV_STEP_INDEX/>
          <PROGRAM>Casava</PROGRAM>
          <VERSION>1.8</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>data usage statement</TAG>
        <VALUE>Pre-publication use restricted as per the Toronto agreement.  These data are released in the SRA to provide pre-publication access.  Use of the data is restricted as per the Toronto agreement on pre-publication data release see http://www.nature.com/nature/journal/v461/n7261/full/461168a.html).  The ISGC intends to publish genome wide analyses of these data, including but not restricted to genome wide collections of SNP and their properties, signatures of selection, nucleotide diversity estimates and enhanced gene models. Researchers who are interested in using the data for publication should contact the ISGC projects leaders James Kijas (James.Kijas@csiro.au), John McEwan (john.mcewan@agresearch.co.nz) or Kim Worley (kworley@bcm.edu) for additional information. Researchers interested in surveys of sequence variability specific to genes of interest are free to use the data without the permission of the ISGC.</VALUE>
        <UNITS/>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
</EXPERIMENT_SET>
