SRX154973 4LP100020385_20120406_experiment <STUDY_REF accession="SRP013811" refcenter="UMIGS" refname="PNMEN_NM422"> <IDENTIFIERS> <PRIMARY_ID>SRP013811</PRIMARY_ID> <SUBMITTER_ID namespace="UMIGS">PNMEN_NM422</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Construction Protocol Details</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="SRS346264" refcenter="UMIGS" refname="PNMEN_NM422"> <IDENTIFIERS> <PRIMARY_ID>SRS346264</PRIMARY_ID> <SUBMITTER_ID namespace="UMIGS">PNMEN_NM422</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>4LP100020385_20120406</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>Adapter</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <BASE_COORD>5</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>15</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>3</READ_INDEX> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>Linker</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL match_edge="full" max_mismatch="3">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL> <BASECALL match_edge="full" max_mismatch="3">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>4</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <RELATIVE_ORDER follows_read_index="3"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <LS454> <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL> </LS454> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT center_name="UMIGS" alias="IL100019438_20120110_experiment" accession="SRX154974"> <IDENTIFIERS> <PRIMARY_ID>SRX154974</PRIMARY_ID> <SUBMITTER_ID namespace="UMIGS">IL100019438_20120110_experiment</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP013811" refcenter="UMIGS" refname="PNMEN_NM422"> <IDENTIFIERS> <PRIMARY_ID>SRP013811</PRIMARY_ID> <SUBMITTER_ID namespace="UMIGS">PNMEN_NM422</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Construction Protocol Details</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="SRS346264" refcenter="UMIGS" refname="PNMEN_NM422"> <IDENTIFIERS> <PRIMARY_ID>SRS346264</PRIMARY_ID> <SUBMITTER_ID namespace="UMIGS">PNMEN_NM422</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>IL100019438_20120110</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>202</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>102</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> <PROCESSING/> </EXPERIMENT> <EXPERIMENT center_name="UMIGS" alias="4LP100020385_20111213_experiment" accession="SRX154975"> <IDENTIFIERS> <PRIMARY_ID>SRX154975</PRIMARY_ID> <SUBMITTER_ID namespace="UMIGS">4LP100020385_20111213_experiment</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP013811" refcenter="UMIGS" refname="PNMEN_NM422"> <IDENTIFIERS> <PRIMARY_ID>SRP013811</PRIMARY_ID> <SUBMITTER_ID namespace="UMIGS">PNMEN_NM422</SUBMITTER_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>Construction Protocol Details</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="SRS346264" refcenter="UMIGS" refname="PNMEN_NM422"> <IDENTIFIERS> <PRIMARY_ID>SRS346264</PRIMARY_ID> <SUBMITTER_ID namespace="UMIGS">PNMEN_NM422</SUBMITTER_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>4LP100020385_20111213</LIBRARY_NAME> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>Adapter</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>BarCode</READ_TYPE> <BASE_COORD>5</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>2</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>15</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>3</READ_INDEX> <READ_CLASS>Technical Read</READ_CLASS> <READ_TYPE>Linker</READ_TYPE> <EXPECTED_BASECALL_TABLE> <BASECALL match_edge="full" max_mismatch="3">TCGTATAACTTCGTATAATGTATGCTATACGAAGTTATTACG</BASECALL> <BASECALL match_edge="full" max_mismatch="3">CGTAATAACTTCGTATAGCATACATTATACGAAGTTATACGA</BASECALL> </EXPECTED_BASECALL_TABLE> </READ_SPEC> <READ_SPEC> <READ_INDEX>4</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <RELATIVE_ORDER follows_read_index="3"/> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <LS454> <INSTRUMENT_MODEL>454 GS FLX Titanium</INSTRUMENT_MODEL> </LS454> </PLATFORM> <PROCESSING/> </EXPERIMENT> </EXPERIMENT_SET>