<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="1133094704324 Toxoplasma gondii TgShUS28  strain TGSHUS28-PE-IL1-1 Experiment" center_name="JCVI" accession="SRX160130">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX160130</PRIMARY_ID>
      <SUBMITTER_ID namespace="JCVI">1133094704324 Toxoplasma gondii TgShUS28  strain TGSHUS28-PE-IL1-1 Experiment</SUBMITTER_ID>
    </IDENTIFIERS>
    <!-- Using accessions for study and sample reference, when they are not created from JCVI. -->
    <TITLE>1133094704324 Toxoplasma gondii TgShUS28  strain TGSHUS28-PE-IL1-1 Experiment</TITLE>
    <STUDY_REF accession="SRP014416" refname="1133094704324 Toxoplasma gondii TgShUS28  strain TGSHUS28-PE-IL1-1 Study">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP014416</PRIMARY_ID>
        <SUBMITTER_ID namespace="JCVI">1133094704324 Toxoplasma gondii TgShUS28  strain TGSHUS28-PE-IL1-1 Study</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Toxoplasma gondii genome sequencing project</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS350367" refname="1133094704324 Toxoplasma gondii TgShUS28  strain TGSHUS28-PE-IL1-1 Sample">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS350367</PRIMARY_ID>
          <SUBMITTER_ID namespace="JCVI">1133094704324 Toxoplasma gondii TgShUS28  strain TGSHUS28-PE-IL1-1 Sample</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>TGSHUS28-PE-IL1-1</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="400" NOMINAL_SDEV="100"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>202</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>102</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
</EXPERIMENT_SET>
