<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT center_name="Texas A&amp;M University" alias="BTx623*IS3620C DG" accession="SRX207965">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX207965</PRIMARY_ID>
      <SUBMITTER_ID namespace="Texas A&amp;M University">BTx623*IS3620C DG</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Digital Genotyping of Sorghum – A Diverse Plant Species with a Large Repeat-Rich Genome</TITLE>
    <STUDY_REF accession="SRP017387">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP017387</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Library barcode information is listed below.  Each sequence should begin with (barcode)CCGGCC.  Lane    Barcode RIL Name  1 CAAT RIL2-7  1 CCAT RIL3-7  1 CTAT RIL4-7  1 CGAT RIL6-8  1 AATC RIL7-7  1 ACTC RIL8-7  1 ATTC RIL9-7  1 AGTC RIL10-7  1 TAGC RIL11-7  1 TCGC RIL12-7  1 TTGC RIL13-7  1 TGGC RIL14-7  1 GACT RIL17-7  1 GCCT RIL18-7  1 GTCT RIL19-7  1 GGCT RIL20-7  1 CAGA RIL21-8  1 CCGA RIL23-7  1 CTGA RIL24-8  1 CGGA RIL25-7  1 AAGC RIL26-7  1 ACGC RIL27-7  1 ATGC RIL28-7  1 AGGC RIL29-7  2 CAAT RIL30-7  2 CCAT RIL31-7  2 CTAT RIL32-8  2 CGAT RIL33-7  2 AATC RIL34-8  2 ACTC RIL35-7  2 ATTC RIL36-7  2 AGTC RIL37-6  2 TACA RIL38-7  2 TCGC RIL39-7  2 TTGC RIL40-7  2 TGGC RIL41-7  2 GACT RIL42-7  2 GCCT RIL43-7  2 GTCT RIL44-7  2 GGCT RIL45-7  2 CAGA RIL46-8  2 CCGA RIL47-7  2 CTGA RIL48-7  2 CGGA RIL49-7  2 AAGC RIL50-7  2 ACGC RIL51-7  2 ATGC RIL52-7  2 AGGC RIL53-8  3 CAAT RIL54-7  3 CCAT RIL55-7  3 CTAT RIL56-7  3 CGAT RIL57-7  3 AATC RIL58-7  3 ACTC RIL59-7  3 ATTC RIL60-7  3 AGTC RIL63-6  3 TAGC RIL64-7  3 TCCA RIL65-7  3 TTGC RIL66-7  3 TGGC RIL67-7  3 GACT RIL68-6  3 GCCT RIL69-7  3 GTCT RIL70-7  3 GGCT RIL71-7  3 CAGA RIL72-7  3 CCGA RIL73-7  3 CTGA RIL74-7  3 CGGA RIL75-7  3 AAGC RIL76-7  3 ACGC RIL77-7  3 ATGC RIL78-7  3 AGGC RIL79-7  4 CAAT RIL80-7  4 CCAT RIL81-7  4 CTAT RIL82-7  4 CGAT RIL84-7  4 AATC RIL85-7  4 ACTC RIL86-7  4 ATTC RIL87-7  4 AGTC RIL88-7  4 TAGC RIL89-7  4 TCGC RIL90-7  4 TTCA RIL91-7  4 TGGC RIL92-6  4 GACT RIL93-6  4 GCCT RIL94-6  4 GTCT RIL95-6  4 GGCT RIL96-6  4 CAGA RIL97-6  4 CCGA RIL98-6  4 CTGA RIL100-6  4 CGGA RIL102-6  4 AAGC RIL103-6  4 ACGC RIL105-6  4 ATGC RIL106-6  4 AGGC RIL107-6  6 CAAT RIL108-6  6 CCAT RIL109-6  6 CTAT RIL110-6  6 CGAT RIL112-6  6 AATC RIL113-6  6 ACTC RIL114-6  6 ATTC RIL115-6  6 AGTC RIL116-6  6 TAGC RIL117-6  6 TCGC RIL118-6  6 TTGC RIL119-6  6 TGCA RIL120-6  6 GACT RIL122-6  6 GCCT RIL124-6  6 GTCT RIL125-6  6 GGCT RIL126-6  6 CAGA RIL132-6  6 CCGA RIL133-6  6 CTGA RIL134-6  6 CGGA RIL136-6  6 AAGC RIL137-6  6 ACGC RIL139-6  6 ATGC RIL140-6  6 AGGC RIL141-6  7 CAAT RIL142-6  7 CCAT RIL143-6  7 CTAT RIL144-6  7 CGAT RIL145-6  7 AATC RIL146-6  7 ACTC RIL148-6  7 ATTC RIL149-6  7 AGTC RIL150-6  7 TAGC RIL152-6  7 TCGC RIL153-6  7 TTGC RIL154-6  7 TGGC RIL155-6  7 GATG RIL156-6  7 GCCT RIL157-6  7 GTCT RIL158-6  7 GGCT RIL159-6  7 CAGA RIL160-6  7 CCGA BTx623  7 CTGA BTx623  7 CGGA IS3620C  7 AAGC IS3620C</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS377866">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS377866</PRIMARY_ID>
          <SUBMITTER_ID namespace="Texas A&amp;M University">BTx623*IS3620C RIL Population</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>Reduced Representation</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>38</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer IIx</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION>
          <STEP_INDEX/>
          <PREV_STEP_INDEX/>
          <PROGRAM>CASAVA</PROGRAM>
          <VERSION>V1.5</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
  </EXPERIMENT>
</EXPERIMENT_SET>
