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  <EXPERIMENT alias="Pseudonitzschia microbiome" accession="SRX247709" center_name="University of California Irvine">
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      <PRIMARY_ID>SRX247709</PRIMARY_ID>
      <SUBMITTER_ID namespace="University of California Irvine">Pseudonitzschia microbiome</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Host-specific adaptation governs the interaction of the marine diatom,   Pseudo-nitzschia and their microbiota</TITLE>
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        <PRIMARY_ID>SRP019069</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>DNA samples were extracted using RTL buffer with ß- mercaptoethanol, and lysed with sterile beads in a tissue lyser. The samples were then processed with the Qiagen DNA Stool Kit (Qiagen, Valencia, CA) and diluted to a final concentration of 20 ng/µl. Pyrosequencing was carried out by initially generating a sequence library from a one-step PCR of 30 cycles using a mixture of Hot Start and HotStar high fidelity Taq polymerase.  The V6-V9 region of the 16S rDNA gene was targeted for the 454 pyrosequencing run using the universal primers Yellow939F and Yellow1492R. Tag-encoded FLX amplicon pyrosequencing analyses utilized Roche 454 FLX instrument with Titanium reagents, titanium procedures performed at the Research and Testing Laboratory (Lubbock, TX) based upon RTL protocols (www.researchandtesting.com).</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS399599</PRIMARY_ID>
          <SUBMITTER_ID namespace="University of California Irvine">P. pungens-B2A</SUBMITTER_ID>
        </IDENTIFIERS>
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        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
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          <STEP_INDEX/>
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        <PIPE_SECTION>
          <STEP_INDEX/>
          <PREV_STEP_INDEX/>
          <PROGRAM>QIIME</PROGRAM>
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      <PRIMARY_ID>SRX247735</PRIMARY_ID>
      <SUBMITTER_ID namespace="University of California Irvine">Pseudonitzschia pungens- C5A</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Host-specific adaptation governs the interaction of the marine diatom,   Pseudo-nitzschia and their microbiota</TITLE>
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        <PRIMARY_ID>SRP019069</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>DNA samples were extracted using RTL buffer with ß- mercaptoethanol, and lysed with sterile beads in a tissue lyser. The samples were then processed with the Qiagen DNA Stool Kit (Qiagen, Valencia, CA) and diluted to a final concentration of 20 ng/µl. Pyrosequencing was carried out by initially generating a sequence library from a one-step PCR of 30 cycles using a mixture of Hot Start and HotStar high fidelity Taq polymerase.  The V6-V9 region of the 16S rDNA gene was targeted for the 454 pyrosequencing run using the universal primers Yellow939F and Yellow1492R. Tag-encoded FLX amplicon pyrosequencing analyses utilized Roche 454 FLX instrument with Titanium reagents, titanium procedures performed at the Research and Testing Laboratory (Lubbock, TX) based upon RTL protocols (www.researchandtesting.com).</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS399609</PRIMARY_ID>
          <SUBMITTER_ID namespace="University of California Irvine">P. pungens-C5A</SUBMITTER_ID>
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            <READ_INDEX>1</READ_INDEX>
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        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
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        <PIPE_SECTION>
          <STEP_INDEX/>
          <PREV_STEP_INDEX/>
          <PROGRAM>Roche SFFfile tool</PROGRAM>
          <VERSION/>
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        <PIPE_SECTION>
          <STEP_INDEX/>
          <PREV_STEP_INDEX/>
          <PROGRAM>QIIME</PROGRAM>
          <VERSION>3.0</VERSION>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX247736</PRIMARY_ID>
      <SUBMITTER_ID namespace="University of California Irvine">Pseudonitzschia fraudelenta -1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Host-specific adaptation governs the interaction of the marine diatom, Pseudo-nitzschia and their microbiota</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP019069</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>DNA samples were extracted using RTL buffer with ß- mercaptoethanol, and lysed with sterile beads in a tissue lyser. The samples were then processed with the Qiagen DNA Stool Kit (Qiagen, Valencia, CA) and diluted to a final concentration of 20 ng/µl. Pyrosequencing was carried out by initially generating a sequence library from a one-step PCR of 30 cycles using a mixture of Hot Start and HotStar high fidelity Taq polymerase.  The V6-V9 region of the 16S rDNA gene was targeted for the 454 pyrosequencing run using the universal primers Yellow939F and Yellow1492R. Tag-encoded FLX amplicon pyrosequencing analyses utilized Roche 454 FLX instrument with Titanium reagents, titanium procedures performed at the Research and Testing Laboratory (Lubbock, TX) based upon RTL protocols (www.researchandtesting.com).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS399610">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS399610</PRIMARY_ID>
          <SUBMITTER_ID namespace="University of California Irvine">P. fraudelenta- 1</SUBMITTER_ID>
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        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
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          <STEP_INDEX/>
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          <STEP_INDEX/>
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      <PRIMARY_ID>SRX247743</PRIMARY_ID>
      <SUBMITTER_ID namespace="University of California Irvine">Pseudonitzschia fraudelenta - 8</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Host-specific adaptation governs the interaction of the marine diatom, Pseudo-nitzschia and their microbiota</TITLE>
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        <PRIMARY_ID>SRP019069</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>DNA samples were extracted using RTL buffer with ß- mercaptoethanol, and lysed with sterile beads in a tissue lyser. The samples were then processed with the Qiagen DNA Stool Kit (Qiagen, Valencia, CA) and diluted to a final concentration of 20 ng/µl. Pyrosequencing was carried out by initially generating a sequence library from a one-step PCR of 30 cycles using a mixture of Hot Start and HotStar high fidelity Taq polymerase.  The V6-V9 region of the 16S rDNA gene was targeted for the 454 pyrosequencing run using the universal primers Yellow939F and Yellow1492R. Tag-encoded FLX amplicon pyrosequencing analyses utilized Roche 454 FLX instrument with Titanium reagents, titanium procedures performed at the Research and Testing Laboratory (Lubbock, TX) based upon RTL protocols (www.researchandtesting.com).</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS399615</PRIMARY_ID>
          <SUBMITTER_ID namespace="University of California Irvine">P. fraudelenta-8</SUBMITTER_ID>
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        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
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        <PIPE_SECTION>
          <STEP_INDEX/>
          <PREV_STEP_INDEX/>
          <PROGRAM>Roche SFF File tool</PROGRAM>
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        <PIPE_SECTION>
          <STEP_INDEX/>
          <PREV_STEP_INDEX/>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX247744</PRIMARY_ID>
      <SUBMITTER_ID namespace="University of California Irvine">Pseudonitzschia australis-12</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Host-specific adaptation governs the interaction of the marine diatom, Pseudo-nitzschia and their microbiota</TITLE>
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        <PRIMARY_ID>SRP019069</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>DNA samples were extracted using RTL buffer with ß- mercaptoethanol, and lysed with sterile beads in a tissue lyser. The samples were then processed with the Qiagen DNA Stool Kit (Qiagen, Valencia, CA) and diluted to a final concentration of 20 ng/µl. Pyrosequencing was carried out by initially generating a sequence library from a one-step PCR of 30 cycles using a mixture of Hot Start and HotStar high fidelity Taq polymerase.  The V6-V9 region of the 16S rDNA gene was targeted for the 454 pyrosequencing run using the universal primers Yellow939F and Yellow1492R. Tag-encoded FLX amplicon pyrosequencing analyses utilized Roche 454 FLX instrument with Titanium reagents, titanium procedures performed at the Research and Testing Laboratory (Lubbock, TX) based upon RTL protocols (www.researchandtesting.com).</DESIGN_DESCRIPTION>
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          <SUBMITTER_ID namespace="University of California Irvine">P. australis- 12</SUBMITTER_ID>
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        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX247757</PRIMARY_ID>
      <SUBMITTER_ID namespace="University of California Irvine">Pseudonitzschia australis -15</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Host-specific adaptation governs the interaction of the marine diatom, Pseudo-nitzschia and their microbiota</TITLE>
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        <PRIMARY_ID>SRP019069</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>DNA samples were extracted using RTL buffer with ß- mercaptoethanol, and lysed with sterile beads in a tissue lyser. The samples were then processed with the Qiagen DNA Stool Kit (Qiagen, Valencia, CA) and diluted to a final concentration of 20 ng/µl. Pyrosequencing was carried out by initially generating a sequence library from a one-step PCR of 30 cycles using a mixture of Hot Start and HotStar high fidelity Taq polymerase.  The V6-V9 region of the 16S rDNA gene was targeted for the 454 pyrosequencing run using the universal primers Yellow939F and Yellow1492R. Tag-encoded FLX amplicon pyrosequencing analyses utilized Roche 454 FLX instrument with Titanium reagents, titanium procedures performed at the Research and Testing Laboratory (Lubbock, TX) based upon RTL protocols (www.researchandtesting.com).</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
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        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
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      <PRIMARY_ID>SRX247761</PRIMARY_ID>
      <SUBMITTER_ID namespace="University of California Irvine">Pseudonitzschia australis -B5</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Host-specific adaptation governs the interaction of the marine diatom, Pseudo-nitzschia and their microbiota</TITLE>
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        <EXTERNAL_ID namespace="BioProject">PRJNA182211</EXTERNAL_ID>
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      <DESIGN_DESCRIPTION>DNA samples were extracted using RTL buffer with ß- mercaptoethanol, and lysed with sterile beads in a tissue lyser. The samples were then processed with the Qiagen DNA Stool Kit (Qiagen, Valencia, CA) and diluted to a final concentration of 20 ng/µl. Pyrosequencing was carried out by initially generating a sequence library from a one-step PCR of 30 cycles using a mixture of Hot Start and HotStar high fidelity Taq polymerase.  The V6-V9 region of the 16S rDNA gene was targeted for the 454 pyrosequencing run using the universal primers Yellow939F and Yellow1492R. Tag-encoded FLX amplicon pyrosequencing analyses utilized Roche 454 FLX instrument with Titanium reagents, titanium procedures performed at the Research and Testing Laboratory (Lubbock, TX) based upon RTL protocols (www.researchandtesting.com).</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS399632</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN01818674</EXTERNAL_ID>
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