<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT accession="SRX211992" center_name="BI" alias="1649574.WR25344.Solexa-63240.B08NYABXX110513.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX211992</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">1649574.WR25344.Solexa-63240.B08NYABXX110513.P</SUBMITTER_ID>
      <UUID>66fa2c17-ef5f-4682-96ee-902e5b7c1253</UUID>
    </IDENTIFIERS>
    <TITLE>Illumina RNA sequencing of transcriptome paired-end library 'Solexa-63240' containing sample Ecoli_EcK12_RZ2_Zymo_cDNA_Zymo</TITLE>
    <STUDY_REF accession="SRP017612">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP017612</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA182522</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Escherichia coli K-12">Prokaryotic rRNA Depletion Escherichia_coli_K_12_ltp_F647_Whole_Transcriptome_Sequencing_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Prokaryotic RNA Sequencing on Illumina</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS415388">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS415388</PRIMARY_ID>
          <EXTERNAL_ID namespace="biosample">SAMN01821758</EXTERNAL_ID>
          <EXTERNAL_ID namespace="Broad Institute">Ecoli_EcK12_RZ2_Zymo_cDNA_Zymo</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-63240</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="144"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>152</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>77</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-05-20 18:40:06.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.10.36</VERSION>
          <NOTES>Sequencer Application 1.3.8</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>98082.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:98082.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>cDNA Library</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G13245</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25344</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX212027" center_name="BI" alias="1649574.WR25344.Solexa-63235.B08NYABXX110513.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX212027</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">1649574.WR25344.Solexa-63235.B08NYABXX110513.P</SUBMITTER_ID>
      <UUID>19fc0a55-3930-4ec0-ab77-3490e43d2e80</UUID>
    </IDENTIFIERS>
    <TITLE>Illumina RNA sequencing of transcriptome paired-end library 'Solexa-63235' containing sample UnEcK12_APC</TITLE>
    <STUDY_REF accession="SRP017612">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP017612</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA182522</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Escherichia coli K-12">Prokaryotic rRNA Depletion Escherichia_coli_K_12_ltp_F647_Whole_Transcriptome_Sequencing_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Prokaryotic RNA Sequencing on Illumina</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS380924">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS380924</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA182522.UnEcK12_APC</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-63235</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="213"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>152</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>77</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-05-20 18:40:06.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.10.36</VERSION>
          <NOTES>Sequencer Application 1.3.8</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>98077.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:98077.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>cDNA Library</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G13245</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25344</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX212591" center_name="BI" alias="1649574.WR25344.Solexa-63239.B08NYABXX110513.P">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX212591</PRIMARY_ID>
      <SUBMITTER_ID namespace="BI">1649574.WR25344.Solexa-63239.B08NYABXX110513.P</SUBMITTER_ID>
      <UUID>f63d4408-9aa4-4a3f-9def-f31998bc984f</UUID>
    </IDENTIFIERS>
    <TITLE>Illumina RNA sequencing of transcriptome paired-end library 'Solexa-63239' containing sample EcK12_RZ1_Zymo_cDNA_APC</TITLE>
    <STUDY_REF accession="SRP017612">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP017612</PRIMARY_ID>
        <EXTERNAL_ID namespace="bioproject">PRJNA182522</EXTERNAL_ID>
        <EXTERNAL_ID namespace="Broad Institute" label="Escherichia coli K-12">Prokaryotic rRNA Depletion Escherichia_coli_K_12_ltp_F647_Whole_Transcriptome_Sequencing_Monoisolate</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Prokaryotic RNA Sequencing on Illumina</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS381448">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS381448</PRIMARY_ID>
          <SUBMITTER_ID namespace="BI">PRJNA182522.EcK12_RZ1_Zymo_cDNA_APC</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Solexa-63239</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="157"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>152</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_LABEL>forward</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_LABEL>reverse</READ_LABEL>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>77</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>2011-05-20 18:40:06.0</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>GAPipeline</PROGRAM>
          <VERSION>RTA1.10.36</VERSION>
          <NOTES>Sequencer Application 1.3.8</NOTES>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>gssr_id</TAG>
        <VALUE>98081.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>lsid</TAG>
        <VALUE>BROAD:SEQUENCING_SAMPLE:98081.0</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>material_type</TAG>
        <VALUE>cDNA Library</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>project</TAG>
        <VALUE>G13245</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>work_request</TAG>
        <VALUE>25344</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
</EXPERIMENT_SET>
