<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="454 sequencing of Thelohanellus kitauei spores DNA" center_name="CAAS" accession="SRX249046">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX249046</PRIMARY_ID>
      <SUBMITTER_ID namespace="CAAS">454 sequencing of Thelohanellus kitauei spores DNA</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>454 sequencing of Thelohanellus kitauei spores DNA</TITLE>
    <STUDY_REF accession="SRP020474">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP020474</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA193083</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>or 454/Roche GS FLX (454 FLX) paired end pyrosequencing, libraries of 8k band were prepared using the manufacturers’standard protocol.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS406372">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS406372</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN01940900</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED NOMINAL_LENGTH="8000"/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>0</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>2</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Linker</READ_TYPE>
            <EXPECTED_BASECALL_TABLE>
              <BASECALL>GTTGGAACCGAAAGGGTTTGAATTCAAACCCTTTCGGTTCCAAC</BASECALL>
            </EXPECTED_BASECALL_TABLE>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>3</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <RELATIVE_ORDER follows_read_index="2"/>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
  <EXPERIMENT alias="Illumina sequencing of Thelohanellus kitauei spores DNA" accession="SRX249065" center_name="CAAS">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX249065</PRIMARY_ID>
      <SUBMITTER_ID namespace="CAAS">Illumina sequencing of Thelohanellus kitauei spores DNA</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Illumina sequencing of Thelohanellus kitauei spores DNA</TITLE>
    <STUDY_REF accession="SRP020474">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP020474</PRIMARY_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>For Illumina sequencing, the Illumina adapters were ligated onto the genome DNA, then DNA fragments with the size of estimated 0.5kb (for pair-end sequencing) and 3kb (for mate-pair sequencing) were selected using gel-electrophoresis. Libraries were PCR-amplified using Phusion polymerase. Sequencing libraries were denatured with sodium hydroxide and diluted in hybridization buffer. In the end, the prepared libraries were loaded onto a single lane of an Illumina GA flowcell.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS406372">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS406372</PRIMARY_ID>
          <SUBMITTER_ID namespace="CAAS">Myxosporean</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME/>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>200</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Reverse</READ_TYPE>
            <BASE_COORD>101</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
</EXPERIMENT_SET>
