<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="FM_P.leucopus_Female_Ovaries_RL3_Plate1_Region2" accession="SRX256484" center_name="CUNY - The Graduate Center">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX256484</PRIMARY_ID>
      <SUBMITTER_ID namespace="CUNY - The Graduate Center">FM_P.leucopus_Female_Ovaries_RL3_Plate1_Region2</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>P.leucopus_NY_Ovary_transcriptome</TITLE>
    <STUDY_REF accession="SRP020005">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP020005</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA192723</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Livers, gonads and brains were immediately extracted from caught mice, rinsed with PBS, and immediately placed in RNALater* (Ambion Inc., Austin, TX) on ice before transport and storage at -80*C in the lab. Total RNA was extracted using RNaqueous* kits (Ambion, Austin, TX) or Trizol* reagent (Invitrogen, Carlsbad, CA). cDNA synthesis was carried out using the SMARTer™ cDNA synthesis kit (Clontech, Mountain View, CA) or the Roche cDNA synthesis kit (Roche Diagnostics, Indianapolis, IN). cDNA pools were sequenced with multiplex identifiers using standard 454 FLX Titanium protocols and sequenced on the 454 FLX  platform.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS405140">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS405140</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN01991048</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>FM_P.leucopus_Female_Ovaries_RL3_Plate1_Region2</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>0</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Technical Read</READ_CLASS>
            <READ_TYPE>Adapter</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
          <READ_SPEC>
            <READ_INDEX>1</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>5</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <LS454>
        <INSTRUMENT_MODEL>454 GS FLX+</INSTRUMENT_MODEL>
      </LS454>
    </PLATFORM>
    <PROCESSING/>
  </EXPERIMENT>
</EXPERIMENT_SET>
